Works matching AU Borevitz, Justin O.

Results: 54

Climatic Drivers of Silicon Accumulation in a Model Grass Operate in Low- but Not High-Silicon Soils.

Published in:

Plants (2223-7747), 2023, v. 12, n. 5, p. 995, doi. 10.3390/plants12050995

By:

Johnson, Scott N.;
Vandegeer, Rebecca K.;
Borevitz, Justin O.;
Hartley, Susan E.;
Tissue, David T.;
Hall, Casey R.

Publication type:

Article

Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.

Published in:

Plant Cell, 2017, v. 29, n. 8, p. 1836, doi. 10.1105/tpc.16.00828

By:

Crisp, Peter A.;
Ganguly, Diep R.;
Smith, Aaron B.;
Murray, Kevin D.;
Estavillo, Gonzalo M.;
Searle, Iain;
Ford, Ethan;
Bogdanović, Ozren;
Lister, Ryan;
Borevitz, Justin O.;
Eichten, Steven R.;
Pogson, Barry J.

Publication type:

Article

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Published in:

Nature Genetics, 2012, v. 44, n. 2, p. 212, doi. 10.1038/ng.1042

By:

Horton, Matthew W;
Hancock, Angela M;
Huang, Yu S;
Toomajian, Christopher;
Atwell, Susanna;
Auton, Adam;
Muliyati, N Wayan;
Platt, Alexander;
Sperone, F Gianluca;
Vilhjálmsson, Bjarni J;
Nordborg, Magnus;
Borevitz, Justin O;
Bergelson, Joy

Publication type:

Article

Mapping a plant's chemical vocabulary.

Published in:

Nature Genetics, 2006, v. 38, n. 7, p. 737, doi. 10.1038/ng0706-737

By:

Baxter, Ivan R.;
Borevitz, Justin O.

Publication type:

Article

The extent of linkage disequilibrium in Arabidopsis thaliana.

Published in:

Nature Genetics, 2002, v. 30, n. 2, p. 190, doi. 10.1038/ng813

By:

Nordborg, Magnus;
Borevitz, Justin O.;
Bergelson, Joy;
Berry, Charles C.;
Chory, Joanne;
Hagenblad, Jenny;
Kreitman, Martin;
Maloof, Julin N.;
Noyes, Tina;
Oefner, Peter J.;
Stahl, Eli A.;
Weigel, Detlef

Publication type:

Article

Natural variation in light sensitivity of Arabidopsis.

Published in:

Nature Genetics, 2001, v. 29, n. 4, p. 441, doi. 10.1038/ng777

By:

Maloof, Julin N.;
Borevitz, Justin O.;
Dabi, Tsegaye;
Lutes, Jason;
Nehring, Ramlah B.;
Redfern, Joanna L.;
Trainer, Gabriel T.;
Wilson, Jeanne M.;
Asami, Tadao;
Berry, Charles C.;
Weigel, Detlef;
Chory, Joanne

Publication type:

Article

Correction: A Systematic Map of Genetic Variation in Plasmodium falciparum.

Published in:

2006

By:

Kidgell, Claire;
Volkman, Sarah K.;
Daily, Johanna;
Borevitz, Justin O.;
Plouffe, David;
Zhou, Yingyao;
Johnson, Jeffrey R.;
Roch, Karine G. Le;
Sarr, Ousmane;
Ndir, Omar;
Mboup, Soulyemane;
Batalov, Serge;
Wirth, Dyann F.;
Winzeler, Elizabeth A.

Publication type:

Correction Notice

A Systematic Map of Genetic Variation in Plasmodium falciparum.

Published in:

PLoS Pathogens, 2006, v. 2, n. 6, p. e57, doi. 10.1371/journal.ppat.0020057

By:

Kidgell, Claire;
Volkman, Sarah K.;
Daily, Johanna;
Borevitz, Justin O.;
Plouffe, David;
Yingyao Zhou;
Johnson, Jeffrey R.;
Le Roch, Karine G.;
Sarr, Ousmane;
Ndir, Omar;
Mboup, Soulyemane;
Batalov, Serge;
Wirth, Dyann F.;
Winzeler, Elizabeth A.;
Haldar, Kasturi

Publication type:

Article

The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14893-5

By:

Phillips, Aaron L.;
Ferguson, Scott;
Watson-Haigh, Nathan S.;
Jones, Ashley W.;
Borevitz, Justin O.;
Burton, Rachel A.;
Atwell, Brian J.

Publication type:

Article

Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain.

Published in:

Annals of Botany, 2017, v. 119, n. 8, p. 1267, doi. 10.1093/aob/mcx022

By:

Ahrens, Collin W.;
Supple, Megan A.;
Aitken, Nicola C.;
Cantrill, David J.;
Borevitz, Justin O.;
James, Elizabeth A.

Publication type:

Article

Within and between Whorls: Comparative Transcriptional Profiling of Aquilegia and Arabidopsis.

Published in:

PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009735

By:

Voelckel, Claudia;
Borevitz, Justin O.;
Kramer, Elena M.;
Hodges, Scott A.

Publication type:

Article

A Common and Unstable Copy Number Variant Is Associated with Differences in GIo1 Expression and Anxiety-Like Behavior.

Published in:

PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004649

By:

Williams IV, Richard;
Lim, Jackie E.;
Harr, Bettina;
Wing, Claudia;
Walters, Ryan;
Distler, Margaret G.;
Teschke, Meike;
Chunlei Wu;
Wiltshire, Tim;
Su, Andrew I.;
Sokoloff, Greta;
Tarantino, Lisa M.;
Borevitz, Justin O.;
Palmer, Abraham A.

Publication type:

Article

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines.

Published in:

PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004318

By:

Balasubramanian, Sureshkumar;
Schwartz, Christopher;
Singh, Anandita;
Warthmann, Norman;
Min Chul Kim;
Maloof, Julin N.;
Loudet, Olivier;
Trainer, Gabriel T.;
Dabi, Tsegaye;
Borevitz, Justin O.;
Chory, Joanne;
Weigel, Detlef

Publication type:

Article

Genomic consequences of artificial selection during early domestication of a wood fibre crop.

Published in:

New Phytologist, 2022, v. 235, n. 5, p. 1944, doi. 10.1111/nph.18297

By:

Mostert‐O'Neill, Marja M.;
Tate, Hannah;
Reynolds, S. Melissa;
Mphahlele, Makobatjatji M.;
van den Berg, Gert;
Verryn, Steve D.;
Acosta, Juan J.;
Borevitz, Justin O.;
Myburg, Alexander A.

Publication type:

Article

Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus.

Published in:

Molecular Ecology, 2023, v. 32, n. 6, p. 1271, doi. 10.1111/mec.16608

By:

Ferguson, Scott;
Jones, Ashley;
Murray, Kevin;
Schwessinger, Benjamin;
Borevitz, Justin O.

Publication type:

Article

Genomic evidence of introgression and adaptation in a model subtropical tree species, Eucalyptus grandis.

Published in:

Molecular Ecology, 2021, v. 30, n. 3, p. 625, doi. 10.1111/mec.15615

By:

Mostert‐O'Neill, Marja Mirjam;
Reynolds, Sharon Melissa;
Acosta, Juan Jose;
Lee, David John;
Borevitz, Justin O.;
Myburg, Alexander Andrew

Publication type:

Article

Spatial, climate and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra.

Published in:

Molecular Ecology, 2020, v. 29, n. 20, p. 3872, doi. 10.1111/mec.15614

By:

Ahrens, Collin W.;
James, Elizabeth A.;
Miller, Adam D.;
Scott, Ferguson;
Aitken, Nicola C.;
Jones, Ashley W.;
Lu‐Irving, Patricia;
Borevitz, Justin O.;
Cantrill, David J.;
Rymer, Paul D.

Publication type:

Article

Landscape drivers of genomic diversity and divergence in woodland Eucalyptus.

Published in:

Molecular Ecology, 2019, v. 28, n. 24, p. 5232, doi. 10.1111/mec.15287

By:

Murray, Kevin D;
Janes, Jasmine K;
Jones, Ashley;
Bothwell, Helen M;
Andrew, Rose L;
Borevitz, Justin O

Publication type:

Article

Population and phylogenomic decomposition via genotyping-by-sequencing in Australian Pelargonium.

Published in:

Molecular Ecology, 2016, v. 25, n. 9, p. 2000, doi. 10.1111/mec.13584

By:

Nicotra, Adrienne B.;
Chong, Caroline;
Bragg, Jason G.;
Ong, Chong Ren;
Aitken, Nicola C.;
Chuah, Aaron;
Lepschi, Brendan;
Borevitz, Justin O.

Publication type:

Article

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass.

Published in:

Molecular Ecology, 2014, v. 23, n. 16, p. 4059, doi. 10.1111/mec.12845

By:

Grabowski, Paul P.;
Morris, Geoffrey P.;
Casler, Michael D.;
Borevitz, Justin O.

Publication type:

Article

Genomic diversity in switchgrass ( Panicum virgatum): from the continental scale to a dune landscape.

Published in:

Molecular Ecology, 2011, v. 20, n. 23, p. 4938, doi. 10.1111/j.1365-294X.2011.05335.x

By:

MORRIS, GEOFFREY P.;
GRABOWSKI, PAUL P;
BOREVITZ, JUSTIN O.

Publication type:

Article

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.

Published in:

Genetics, 2019, v. 211, n. 1, p. 317, doi. 10.1534/genetics.118.301589

By:

Wilson, Pip B.;
Streich, Jared C.;
Murray, Kevin D.;
Eichten, Steve R.;
Riyan Cheng;
Aitken, Nicola C.;
Spokas, Kurt;
Warthmann, Norman;
Gordon, Sean P.;
Vogel, John P.;
Borevitz, Justin O.

Publication type:

Article

Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana.

Published in:

Genetics, 2014, v. 196, n. 2, p. 569, doi. 10.1534/genetics.113.157628

By:

Yan Li;
Riyan Cheng;
Spokas, Kurt A.;
Palmer, Abraham A.;
Borevitz, Justin O.

Publication type:

Article

Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana.

Published in:

Genetics, 2009, v. 183, n. 2, p. 723, doi. 10.1534/genetics.109.104984

By:

Schwartz, Christopher;
BaIasubramanian, Sureshkumar;
Warthmann, Norman;
Michael, Todd P.;
Lempe, Janne;
Sureshkumar, Sridevi;
Kobayashi, Yasushi;
Maloof, Julin N.;
Borevitz, Justin O.;
Chory, Joanne;
Weigel, Detlef

Publication type:

Article

Global Analysis of Allele-Specific Expression in Arabidapsis thaliana.

Published in:

Genetics, 2009, v. 182, n. 4, p. 943, doi. 10.1534/genetics.109.103499

By:

Xu Zhang;
Borevitz, Justin O.

Publication type:

Article

Inferring Population Parameters From Single-Feature Polymorphism Data.

Published in:

Genetics, 2006, v. 173, n. 4, p. 2257, doi. 10.1534/genetics.105.047472

By:

Rong Jiang;
Marjoram, Paul;
Borevitz, Justin O.;
Tavaré, Simon

Publication type:

Article

Association Mapping With Single-Feature Polymorphisms.

Published in:

Genetics, 2006, v. 173, n. 2, p. 1125, doi. 10.1534/genetics.105.052720

By:

Sung Kim;
Keyan Zhao;
Rong Jiang;
Molitor, John;
Borevitz, Justin O.;
Nordborg, Magnus;
Marjoram, Paul

Publication type:

Article

FRIGIDA-Independent Variation in flowering Time of Natural Arabidopsis thaliana Accessions.

Published in:

Genetics, 2005, v. 170, n. 3, p. 1197, doi. 10.1534/genetics.104.036533

By:

Werner, Jonathan D.;
Borevitz, Justin O.;
Uhlenhaut, N. Henriette;
Ecker, Joseph R.;
Chory, Joanne;
Weigel, Detlef;
Sundaresan, V.

Publication type:

Article

Light-Response Quantitative Trait Loci Identified with Composite Interval and eXtreme Array Mapping in Arabidopsis thaliana.

Published in:

Genetics, 2004, v. 167, n. 2, p. 907, doi. 10.1534/genetics.103.024810

By:

Wolyn, David J.;
Borevitz, Justin O.;
Loudet, Olivier;
Schwartz, Chris;
Maloof, Julin;
Ecker, Joseph R.;
Berry, Charles C.;
Chory, Joanne

Publication type:

Article

Quantitative Trait Loci Controlling Light and Hormone Response in Two Accessions of Arabidopsis thaliana.

Published in:

Genetics, 2002, v. 160, n. 2, p. 683, doi. 10.1093/genetics/160.2.683

By:

Borevitz, Justin O.;
Maloof, Julin N.;
Lutes, Jason;
Dabi, Tsegaye;
Redfern, Joanna L.;
Trainer, Gabriel T.;
Werner, Jonathan D.;
Asami, Tadao;
Berry, Charles C.;
Weigel, Detlef;
Chory, Joanne

Publication type:

Article

Adaptation genomics: The angel is in the details.

Published in:

Plant, Cell & Environment, 2018, v. 41, n. 10, p. 2244, doi. 10.1111/pce.13344

By:

Almonte, Andrew A.;
Borevitz, Justin O.

Publication type:

Article

Source verification of mis-identified Arabidopsis thaliana accessions.

Published in:

Plant Journal, 2011, v. 67, n. 3, p. 554, doi. 10.1111/j.1365-313X.2011.04606.x

By:

Anastasio, Alison E.;
Platt, Alexander;
Horton, Matthew;
Grotewold, Erich;
Scholl, Randy;
Borevitz, Justin O.;
Nordborg, Magnus;
Bergelson, Joy

Publication type:

Article

A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana.

Published in:

Plant Direct, 2019, v. 3, n. 5, p. N.PAG, doi. 10.1002/pld3.138

By:

Rungrat, Tepsuda;
Almonte, Andrew A.;
Cheng, Riyan;
Gollan, Peter J.;
Stuart, Tim;
Aro, Eva‐Mari;
Borevitz, Justin O.;
Pogson, Barry;
Wilson, Pip B.

Publication type:

Article

Genomic variation across landscapes: insights and applications.

Published in:

New Phytologist, 2015, v. 207, n. 4, p. 953, doi. 10.1111/nph.13410

By:

Bragg, Jason G.;
Supple, Megan A.;
Andrew, Rose L.;
Borevitz, Justin O.

Publication type:

Article

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, n. 14, p. 1

By:

Huang, Yu S.;
Horton, Matthew;
Vilhjálmsson, Bjarni J.;
Seren, Ümit;
Meng, Dazhe;
Meyer, Christopher;
Ali Amer, Muhammad;
Borevitz, Justin O.;
Bergelson, Joy;
Nordborg, Magnus

Publication type:

Article

CmCGG Methylation-Independent Parent-of-Origin Effects on Genome-Wide Transcript Levels in Isogenic Reciprocal F1 Triploid Plants.

Published in:

DNA Research, 2014, v. 21, n. 2, p. 141, doi. 10.1093/dnares/dst046

By:

Donoghue, Mark T.A.;
Fort, Antoine;
Clifton, Rachel;
Zhang, Xu;
McKeown, Peter C.;
Voigt-Zielinksi, M.L.;
Borevitz, Justin O.;
Spillane, Charles

Publication type:

Article

Deep phenotyping: deep learning for temporal phenotype/genotype classification.

Published in:

Plant Methods, 2018, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13007-018-0333-4

By:

Taghavi Namin, Sarah;
Esmaeilzadeh, Mohammad;
Najafi, Mohammad;
Brown, Tim B.;
Borevitz, Justin O.

Publication type:

Article

Genomic determinants, architecture, and constraints in drought-related traits in Corymbia calophylla.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10531-8

By:

Ahrens, Collin W.;
Murray, Kevin;
Mazanec, Richard A.;
Ferguson, Scott;
Jones, Ashley;
Tissue, David T.;
Byrne, Margaret;
Borevitz, Justin O.;
Rymer, Paul D.

Publication type:

Article

A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation.

Published in:

Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00533

By:

Cazzonelli, Christopher I.;
Nisar, Nazia;
Roberts, Andrea C.;
Murray, Kevin D.;
Borevitz, Justin O.;
Pogson, Barry J.

Publication type:

Article

Managed Relocation: Integrating the Scientific, Regulatory, and Ethical Challenges.

Published in:

BioScience, 2012, v. 62, n. 8, p. 732, doi. 10.1525/bio.2012.62.8.6

By:

SCHWARTZ, MARK W.;
HELLMANN, JESSICA J.;
McLACHLAN, JASON M.;
SAX, DOV F.;
BOREVITZ, JUSTIN O.;
BRENNAN, JEAN;
CAMACHO, ALEJANDRO E.;
CEBALLOS, GERARDO;
CLARK, JAMIE R.;
DOREMUS, HOLLY;
EARLY, REGAN;
ETTERSON, JULIE R.;
FIELDER, DWIGHT;
GILL, JACQUELYN L.;
GONZALEZ, PATRICK;
GREEN, NANCY;
HANNAH, LEE;
JAMIESON, DALE W.;
JAVELINE, DEBRA;
MINTEER, BEN A.

Publication type:

Article

Genome-wide association studies in plants: the missing heritability is in the field.

Published in:

Genome Biology, 2011, v. 12, n. 10, p. 232, doi. 10.1186/gb-2011-12-10-232

By:

Brachi, Benjamin;
Morris, Geoffrey P.;
Borevitz, Justin O.

Publication type:

Article

Axe: rapid, competitive sequence read demultiplexing using a trie.

Published in:

Bioinformatics, 2018, v. 34, n. 22, p. 3924, doi. 10.1093/bioinformatics/bty432

By:

Murray, Kevin D;
Borevitz, Justin O

Publication type:

Article

Environmental resource deficit may drive the evolution of intraspecific trait variation in invasive plant populations.

Published in:

Oikos, 2019, v. 128, n. 2, p. 171, doi. 10.1111/oik.05548

By:

Liu, Shuangshuang;
Streich, Jared;
Borevitz, Justin O.;
Rice, Kevin J.;
Li, Tingting;
Li, Bo;
Bradford, Kent J.

Publication type:

Article

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2845-y

By:

Srivastava, Akanksha;
Karpievitch, Yuliya V.;
Eichten, Steven R.;
Borevitz, Justin O.;
Lister, Ryan

Publication type:

Article

Widespread Interspecific Divergence in Cis-Regulation of Transposable Elements in the Arabidopsis Genus.

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 3, p. 1081

By:

He, Fei;
Zhang, Xu;
Hu, Jin-Yong;
Turck, Franziska;
Dong, Xue;
Goebel, Ulrike;
Borevitz, Justin O.;
de Meaux, Juliette

Publication type:

Article

A methyl transferase links the circadian clock to the regulation of alternative splicing.

Published in:

Nature, 2010, v. 468, n. 7320, p. 112, doi. 10.1038/nature09470

By:

Sanchez, Sabrina E.;
Petrillo, Ezequiel;
Beckwith, Esteban J.;
Xu Zhang;
Rugnone, Matias L.;
Hernando, C. Esteban;
Cuevas, Juan C.;
Godoy Herz, Micaela A.;
Depetris-Chauvin, Ana;
Simpson, Craig G.;
Brown, John W. S.;
Cerdán, Pablo D.;
Borevitz, Justin O.;
Mas, Paloma;
Ceriani, M. Fernanda;
Kornblihtt, Alberto R.;
Yanovsky, Marcelo J.

Publication type:

Article

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana.

Published in:

Nature, 2010, v. 465, n. 7298, p. 632, doi. 10.1038/nature09083

By:

Todesco, Marco;
Balasubramanian, Sureshkumar;
Hu, Tina T.;
Traw, M. Brian;
Horton, Matthew;
Epple, Petra;
Kuhns, Christine;
Sureshkumar, Sridevi;
Schwartz, Christopher;
Lanz, Christa;
Laitinen, Roosa A. E.;
Huang, Yu;
Chory, Joanne;
Lipka, Volker;
Borevitz, Justin O.;
Dangl, Jeffery L.;
Bergelson, Joy;
Nordborg, Magnus;
Weigel, Detlef

Publication type:

Article

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.20777

By:

Stuart, Tim;
Eichten, Steven R.;
Cahn, Jonathan;
Karpievitch, Yuliya V.;
Borevitz, Justin O.;
Lister, Ryan

Publication type:

Article

Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 5, p. 1629, doi. 10.1534/g3.120.401189

By:

Eichten, Steven R.;
Srivastava, Akanksha;
Reddiex, Adam J.;
Ganguly, Diep R.;
Heussler, Alison;
Streich, Jared C.;
Wilson, Pip B.;
Borevitz, Justin O.

Publication type:

Article

Genotypic diversity effects on biomass production in native perennial bioenergy cropping systems.

Published in:

GCB Bioenergy, 2016, v. 8, n. 5, p. 1000, doi. 10.1111/gcbb.12309

By:

Morris, Geoffrey P.;
Hu, Zhenbin;
Grabowski, Paul P.;
Borevitz, Justin O.;
Graaff, Marie‐Anne;
Miller, R. Michael;
Jastrow, Julie D.

Publication type:

Article