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Phosphorylation of Schizosaccharomyces pombe Dss1 mediates direct binding to the ubiquitin‐ligase Dma1 in vitro.
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- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 9, p. 1, doi. 10.1002/pro.4733
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- Article
Learning meaningful representations of protein sequences.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29443-w
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Combining Experiments and Simulations Using the Maximum Entropy Principle.
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- PLoS Computational Biology, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pcbi.1003406
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- Article
Lysine deserts prevent adventitious ubiquitylation of ubiquitin-proteasome components.
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- Cellular & Molecular Life Sciences, 2023, v. 80, n. 6, p. 1, doi. 10.1007/s00018-023-04782-z
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- Article
A context-dependent and disordered ubiquitin-binding motif.
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- Cellular & Molecular Life Sciences, 2022, v. 79, n. 9, p. 1, doi. 10.1007/s00018-022-04486-w
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- Article
The PCNA interaction motifs revisited: thinking outside the PIP-box.
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- Cellular & Molecular Life Sciences, 2019, v. 76, n. 24, p. 4923, doi. 10.1007/s00018-019-03150-0
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- Article
Fast large-scale clustering of protein structures using Gauss integrals.
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- Bioinformatics, 2012, v. 28, n. 4, p. 510, doi. 10.1093/bioinformatics/btr692
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- Article
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method.
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- Proteins, 2014, v. 82, n. 2, p. 288, doi. 10.1002/prot.24386
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- Article
Beyond rotamers: a generative, probabilisticmodel of side chains in proteins.
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- BMC Bioinformatics, 2010, v. 11, p. 306, doi. 10.1186/1471-2105-11-306
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- Article
Full cyclic coordinate descent: solving the protein loop closure problem in Cα space.
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- BMC Bioinformatics, 2005, v. 6, p. 1, doi. 10.1186/1471-2105-6-159
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- Article
Kernel-Matrix Determinant Estimates from stopped Cholesky Decomposition.
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- Journal of Machine Learning Research, 2023, v. 24, p. 1
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- Article
Comparing Molecular Dynamics Force Fields in the Essential Subspace.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0121114
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- Article
Protein Structure Validation and Refinement Using Amide Proton Chemical Shifts Derived from Quantum Mechanics.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084123
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- Article
Inference of Structure Ensembles of Flexible Biomolecules from Sparse, Averaged Data.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079439
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- Article
Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized.
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- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013714
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- Article
Orchestration of signaling by structural disorder in class 1 cytokine receptors.
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- Cell Communication & Signaling, 2020, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12964-020-00626-6
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- Article
A systematic analysis of regression models for protein engineering.
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- PLoS Computational Biology, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012061
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- Article
Rapid protein stability prediction using deep learning representations.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.82593
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- Article
Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics.
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- Systematic Biology, 2008, v. 57, n. 5, p. 750, doi. 10.1080/10635150802422316
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- Article
IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions—Insights from transcription factors.
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- Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 169, doi. 10.1002/pro.3754
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- Article
Conformational and aggregation properties of the 1-93 fragment of apolipoprotein A-I.
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- Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 11, p. 1559, doi. 10.1002/pro.2534
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- Article
Random coil chemical shifts for serine, threonine and tyrosine phosphorylation over a broad pH range.
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- Journal of Biomolecular NMR, 2019, v. 73, n. 12, p. 713, doi. 10.1007/s10858-019-00283-z
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Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-81844-x
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- Article
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.
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- Journal of Computational Chemistry, 2013, v. 34, n. 19, p. 1697, doi. 10.1002/jcc.23292
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- Article
A Monte Carlo Study of the Early Steps of Functional Amyloid Formation.
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- PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146096
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ENCORE: Software for Quantitative Ensemble Comparison.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004415
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- Article