Works by Boocock, James

Results: 21

Enhanced methods to detect haplotypic effects on gene expression.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2307, doi. 10.1093/bioinformatics/btx142

By:

Brown, Robert;
Kichaev, Gleb;
Mancuso, Nicholas;
Boocock, James;
Pasaniuc, Bogdan

Publication type:

Article

Population-Specific Resequencing Associates the ATP-Binding Cassette Subfamily C Member 4 Gene With Gout in New Zealand Māori and Pacific Men.

Published in:

Arthritis & Rheumatology, 2017, v. 69, n. 7, p. 1461, doi. 10.1002/art.40110

By:

Tanner, Callum;
Boocock, James;
Stahl, Eli A.;
Dobbyn, Amanda;
Mandal, Asim K.;
Cadzow, Murray;
Phipps‐Green, Amanda J.;
Topless, Ruth K.;
Hindmarsh, Jennie Harré;
Stamp, Lisa K.;
Dalbeth, Nicola;
Choi, Hyon K.;
Mount, David B.;
Merriman, Tony R.

Publication type:

Article

Whole-organism eQTL mapping at cellular resolution with single-cell sequencing.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.65857

By:

Ben-David, Eyal;
Boocock, James;
Guo, Longhua;
Zdraljevic, Stefan;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions.

Published in:

Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00160

By:

Nguyen, Hoang T.;
Boocock, James;
Merriman, Tony R.;
Black, Michael A.

Publication type:

Article

A bioinformatics workflow for detecting signatures of selection in genomic data.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00293

By:

Cadzow, Murray;
Boocock, James;
Hoang T. Nguyen;
Phillip Wilcox;
Tony R. Merriman;
Michael A. Black

Publication type:

Article

Ancient and modern mitogenomes from Central Argentina: new insights into population continuity, temporal depth and migration in South America.

Published in:

Human Molecular Genetics, 2021, v. 30, n. 13, p. 1200, doi. 10.1093/hmg/ddab105

By:

García, Angelina;
Nores, Rodrigo;
Motti, Josefina M B;
Pauro, Maia;
Luisi, Pierre;
Bravi, Claudio M;
Fabra, Mariana;
Gosling, Anna L;
Kardailsky, Olga;
Boocock, James;
Solé-Morata, Neus;
Matisoo-Smith, Elizabeth A;
Comas, David;
Demarchi, Darío A

Publication type:

Article

A non-coding genetic variant maximally associated with serum urate levels is functionally linked to HNF4A-dependent PDZK1 expression.

Published in:

Human Molecular Genetics, 2018, v. 27, n. 22, p. 3964, doi. 10.1093/hmg/ddy295

By:

Ketharnathan, Sarada;
Leask, Megan;
Boocock, James;
Phipps-Green, Amanda J;
Antony, Jisha;
O'Sullivan, Justin M;
Merriman, Tony R;
Horsfield, Julia A

Publication type:

Article

Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0449-0

By:

Sawaya, Sterling;
Boocock, James;
Black, Michael A.;
Gemmell, Neil J.

Publication type:

Article

Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 432, doi. 10.1186/s12859-014-0449-0

By:

Sawaya, Sterling;
Boocock, James;
Black, Michael A.;
Gemmell, Neil J.

Publication type:

Article

Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.95566

By:

Boocock, James;
Alexander, Noah;
Alamo Tapia, Leslie;
Walter-McNeill, Laura;
Patel, Shivani Prashant;
Munugala, Chetan;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Author Correction: Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS.

Published in:

Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05849-3

By:

Pan, David Z.;
Garske, Kristina M.;
Alvarez, Marcus;
Bhagat, Yash V.;
Boocock, James;
Nikkola, Elina;
Zong Miao;
Raulerson, Chelsea K.;
Cantor, Rita M.;
Civelek, Mete;
Glastonbury, Craig A.;
Small, Kerrin S.;
Boehnke, Michael;
Lusis, Aldons J.;
Sinsheimer, Janet S.;
Mohlke, Karen L.;
Laakso, Markku;
Pajukanta, Päivi;
Ko, Arthur

Publication type:

Article

Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03554-9

By:

Pan, David Z.;
Garske, Kristina M.;
Alvarez, Marcus;
Bhagat, Yash V.;
Boocock, James;
Nikkola, Elina;
Zong Miao;
Raulerson, Chelsea K.;
Cantor, Rita M.;
Civelek, Mete;
Glastonbury, Craig A.;
Small, Kerrin S.;
Boehnke, Michael;
Lusis, Aldons J.;
Sinsheimer, Janet S.;
Mohlke, Karen L.;
Laakso, Markku;
Pajukanta, Päivi;
Ko, Arthur

Publication type:

Article

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2096-x

By:

Boocock, James;
Chagné, David;
Merriman, Tony R.;
Black, Michael A.

Publication type:

Article

A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155046

By:

Matisoo-Smith, Elizabeth A.;
Gosling, Anna L.;
Boocock, James;
Kardailsky, Olga;
Kurumilian, Yara;
Roudesli-Chebbi, Sihem;
Badre, Leila;
Morel, Jean-Paul;
Sebaï, Leïla Ladjimi;
Zalloua, Pierre A.

Publication type:

Article

Complete Mitochondrial Genomes of New Zealand’s First Dogs.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0138536

By:

Greig, Karen;
Boocock, James;
Prost, Stefan;
Horsburgh, K. Ann;
Jacomb, Chris;
Walter, Richard;
Matisoo-Smith, Elizabeth

Publication type:

Article

Retrospective Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Symptomatic Patients Prior to Widespread Diagnostic Testing in Southern California.

Published in:

Clinical Infectious Diseases, 2022, v. 74, n. 2, p. 271, doi. 10.1093/cid/ciab360

By:

Hilt, Evann E;
Boocock, James;
Trejo, Marisol;
Le, Catherine Q;
Guo, Longhua;
Zhang, Yi;
Sathe, Laila;
Arboleda, Valerie A;
Yin, Yi;
Bloom, Joshua S;
Wang, Pin-Chieh;
Elmore, Joann G;
Kruglyak, Leonid;
Shrestha, Lasata;
Bakhash, Shah A Mohamed;
Lin, Michelle;
Xie, Hong;
Huang, Meei-Li;
Roychoudhury, Pavitra;
Greninger, Alexander

Publication type:

Article

Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10636-9

By:

Burga, Alejandro;
Ben-David, Eyal;
Lemus Vergara, Tzitziki;
Boocock, James;
Kruglyak, Leonid

Publication type:

Article

Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08488-7

By:

Guo, Longhua;
Boocock, James;
Hilt, Evann E.;
Chandrasekaran, Sukantha;
Zhang, Yi;
Munugala, Chetan;
Sathe, Laila;
Alexander, Noah;
Arboleda, Valerie A.;
Flint, Jonathan;
Eskin, Eleazar;
Luo, Chongyuan;
Yang, Shangxin;
Garner, Omai B.;
Yin, Yi;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

A Bayesian framework for multiple trait colocalization from summary association statistics.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2538, doi. 10.1093/bioinformatics/bty147

By:

Giambartolomei, Claudia;
Liu, Jimmy Zhenli;
Zhang, Wen;
Hauberg, Mads;
Shi, Huwenbo;
Boocock, James;
Pickrell, Joe;
Jaffe, Andrew E;
Consortium, The CommonMind;
Pasaniuc, Bogdan

Publication type:

Article

A population history of Tokelau – genetic variation and change in atoll populations.

Published in:

Journal of Island & Coastal Archaeology, 2023, v. 18, n. 1, p. 100, doi. 10.1080/15564894.2021.1901805

By:

Gosling, Anna L.;
Lord, Edana;
Boocock, James;
Cameron-Christie, Sophia;
Horsburgh, K. Ann;
Kardailsky, Olga;
Prost, Stefan;
Wilcox, Stephen;
Addison, David;
Thompson, Adam;
Kalolo, John;
Clarke, Andrew C.;
Matisoo-Smith, Elizabeth A.

Publication type:

Article

Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A.

Published in:

BMC Medical Genetics, 2016, v. 17, p. 1, doi. 10.1186/s12881-016-0341-z

By:

Cadzow, Murray;
Merriman, Tony R.;
Boocock, James;
Dalbeth, Nicola;
Stamp, Lisa K.;
Black, Michael A.;
Visscher, Peter M.;
Wilcox, Phillip L.

Publication type:

Article