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Whole-organism eQTL mapping at cellular resolution with single-cell sequencing.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.65857
By:
- Ben-David, Eyal;
- Boocock, James;
- Guo, Longhua;
- Zdraljevic, Stefan;
- Bloom, Joshua S.;
- Kruglyak, Leonid
Publication type:
Article
Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A.
Published in:
BMC Medical Genetics, 2016, v. 17, p. 1, doi. 10.1186/s12881-016-0341-z
By:
- Cadzow, Murray;
- Merriman, Tony R.;
- Boocock, James;
- Dalbeth, Nicola;
- Stamp, Lisa K.;
- Black, Michael A.;
- Visscher, Peter M.;
- Wilcox, Phillip L.
Publication type:
Article
Complete Mitochondrial Genomes of New Zealand’s First Dogs.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0138536
By:
- Greig, Karen;
- Boocock, James;
- Prost, Stefan;
- Horsburgh, K. Ann;
- Jacomb, Chris;
- Walter, Richard;
- Matisoo-Smith, Elizabeth
Publication type:
Article
SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions.
Published in:
Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00160
By:
- Nguyen, Hoang T.;
- Boocock, James;
- Merriman, Tony R.;
- Black, Michael A.
Publication type:
Article
A bioinformatics workflow for detecting signatures of selection in genomic data.
Published in:
Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00293
By:
- Cadzow, Murray;
- Boocock, James;
- Hoang T. Nguyen;
- Phillip Wilcox;
- Tony R. Merriman;
- Michael A. Black
Publication type:
Article
Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10636-9
By:
- Burga, Alejandro;
- Ben-David, Eyal;
- Lemus Vergara, Tzitziki;
- Boocock, James;
- Kruglyak, Leonid
Publication type:
Article
Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0449-0
By:
- Sawaya, Sterling;
- Boocock, James;
- Black, Michael A.;
- Gemmell, Neil J.
Publication type:
Article
Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 432, doi. 10.1186/s12859-014-0449-0
By:
- Sawaya, Sterling;
- Boocock, James;
- Black, Michael A.;
- Gemmell, Neil J.
Publication type:
Article
Retrospective Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Symptomatic Patients Prior to Widespread Diagnostic Testing in Southern California.
Published in:
Clinical Infectious Diseases, 2022, v. 74, n. 2, p. 271, doi. 10.1093/cid/ciab360
By:
- Hilt, Evann E;
- Boocock, James;
- Trejo, Marisol;
- Le, Catherine Q;
- Guo, Longhua;
- Zhang, Yi;
- Sathe, Laila;
- Arboleda, Valerie A;
- Yin, Yi;
- Bloom, Joshua S;
- Wang, Pin-Chieh;
- Elmore, Joann G;
- Kruglyak, Leonid;
- Shrestha, Lasata;
- Bakhash, Shah A Mohamed;
- Lin, Michelle;
- Xie, Hong;
- Huang, Meei-Li;
- Roychoudhury, Pavitra;
- Greninger, Alexander
Publication type:
Article
Ancient and modern mitogenomes from Central Argentina: new insights into population continuity, temporal depth and migration in South America.
Published in:
Human Molecular Genetics, 2021, v. 30, n. 13, p. 1200, doi. 10.1093/hmg/ddab105
By:
- García, Angelina;
- Nores, Rodrigo;
- Motti, Josefina M B;
- Pauro, Maia;
- Luisi, Pierre;
- Bravi, Claudio M;
- Fabra, Mariana;
- Gosling, Anna L;
- Kardailsky, Olga;
- Boocock, James;
- Solé-Morata, Neus;
- Matisoo-Smith, Elizabeth A;
- Comas, David;
- Demarchi, Darío A
Publication type:
Article
A non-coding genetic variant maximally associated with serum urate levels is functionally linked to HNF4A-dependent PDZK1 expression.
Published in:
Human Molecular Genetics, 2018, v. 27, n. 22, p. 3964, doi. 10.1093/hmg/ddy295
By:
- Ketharnathan, Sarada;
- Leask, Megan;
- Boocock, James;
- Phipps-Green, Amanda J;
- Antony, Jisha;
- O'Sullivan, Justin M;
- Merriman, Tony R;
- Horsfield, Julia A
Publication type:
Article
A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa.
Published in:
PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155046
By:
- Matisoo-Smith, Elizabeth A.;
- Gosling, Anna L.;
- Boocock, James;
- Kardailsky, Olga;
- Kurumilian, Yara;
- Roudesli-Chebbi, Sihem;
- Badre, Leila;
- Morel, Jean-Paul;
- Sebaï, Leïla Ladjimi;
- Zalloua, Pierre A.
Publication type:
Article
Population-Specific Resequencing Associates the ATP-Binding Cassette Subfamily C Member 4 Gene With Gout in New Zealand Māori and Pacific Men.
Published in:
Arthritis & Rheumatology, 2017, v. 69, n. 7, p. 1461, doi. 10.1002/art.40110
By:
- Tanner, Callum;
- Boocock, James;
- Stahl, Eli A.;
- Dobbyn, Amanda;
- Mandal, Asim K.;
- Cadzow, Murray;
- Phipps‐Green, Amanda J.;
- Topless, Ruth K.;
- Hindmarsh, Jennie Harré;
- Stamp, Lisa K.;
- Dalbeth, Nicola;
- Choi, Hyon K.;
- Mount, David B.;
- Merriman, Tony R.
Publication type:
Article
Author Correction: Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS.
Published in:
Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05849-3
By:
- Pan, David Z.;
- Garske, Kristina M.;
- Alvarez, Marcus;
- Bhagat, Yash V.;
- Boocock, James;
- Nikkola, Elina;
- Zong Miao;
- Raulerson, Chelsea K.;
- Cantor, Rita M.;
- Civelek, Mete;
- Glastonbury, Craig A.;
- Small, Kerrin S.;
- Boehnke, Michael;
- Lusis, Aldons J.;
- Sinsheimer, Janet S.;
- Mohlke, Karen L.;
- Laakso, Markku;
- Pajukanta, Päivi;
- Ko, Arthur
Publication type:
Article
Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03554-9
By:
- Pan, David Z.;
- Garske, Kristina M.;
- Alvarez, Marcus;
- Bhagat, Yash V.;
- Boocock, James;
- Nikkola, Elina;
- Zong Miao;
- Raulerson, Chelsea K.;
- Cantor, Rita M.;
- Civelek, Mete;
- Glastonbury, Craig A.;
- Small, Kerrin S.;
- Boehnke, Michael;
- Lusis, Aldons J.;
- Sinsheimer, Janet S.;
- Mohlke, Karen L.;
- Laakso, Markku;
- Pajukanta, Päivi;
- Ko, Arthur
Publication type:
Article
The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2096-x
By:
- Boocock, James;
- Chagné, David;
- Merriman, Tony R.;
- Black, Michael A.
Publication type:
Article
A Bayesian framework for multiple trait colocalization from summary association statistics.
Published in:
Bioinformatics, 2018, v. 34, n. 15, p. 2538, doi. 10.1093/bioinformatics/bty147
By:
- Giambartolomei, Claudia;
- Liu, Jimmy Zhenli;
- Zhang, Wen;
- Hauberg, Mads;
- Shi, Huwenbo;
- Boocock, James;
- Pickrell, Joe;
- Jaffe, Andrew E;
- Consortium, The CommonMind;
- Pasaniuc, Bogdan
Publication type:
Article
Enhanced methods to detect haplotypic effects on gene expression.
Published in:
Bioinformatics, 2017, v. 33, n. 15, p. 2307, doi. 10.1093/bioinformatics/btx142
By:
- Brown, Robert;
- Kichaev, Gleb;
- Mancuso, Nicholas;
- Boocock, James;
- Pasaniuc, Bogdan
Publication type:
Article
Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08488-7
By:
- Guo, Longhua;
- Boocock, James;
- Hilt, Evann E.;
- Chandrasekaran, Sukantha;
- Zhang, Yi;
- Munugala, Chetan;
- Sathe, Laila;
- Alexander, Noah;
- Arboleda, Valerie A.;
- Flint, Jonathan;
- Eskin, Eleazar;
- Luo, Chongyuan;
- Yang, Shangxin;
- Garner, Omai B.;
- Yin, Yi;
- Bloom, Joshua S.;
- Kruglyak, Leonid
Publication type:
Article

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