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ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0153-6
By:
- Fouquier, Jennifer;
- Rideout, Jai Ram;
- Bolyen, Evan;
- Chase, John;
- Shiffer, Arron;
- McDonald, Daniel;
- Knight, Rob;
- Caporaso, J. Gregory;
- Kelley, Scott T.
Publication type:
Article
Influence of fecal microbiota transplantation on gut microbiota composition in transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 5, p. 1, doi. 10.1002/alz.066307
By:
- Borsom, Emily M;
- Keefe, Christopher R;
- Hirsch, Allyson H;
- Conn, Kathryn A;
- Orsini, Gabrielle M;
- Jaramillo, Sierra A;
- Bolyen, Evan K;
- Dillon, Matthew R;
- Lee, Keehoon;
- Caporaso, J. Gregory;
- Cope, Emily K
Publication type:
Article
Predicting neurodegenerative disease using the unique gut microbiota composition of transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 5, p. 1, doi. 10.1002/alz.066299
By:
- Borsom, Emily M;
- Conn, Kathryn A;
- Keefe, Christopher R;
- Hirsch, Allyson H;
- Orsini, Gabrielle M;
- Jaramillo, Sierra A;
- Testo, George;
- Avila, Melanie Palma;
- Bolyen, Evan K;
- Dillon, Matthew R;
- Lee, Keehoon;
- Caporaso, J. Gregory;
- Cope, Emily K
Publication type:
Article
Influence of fecal microbiota transplantation on gut microbiota composition and neuroinflammation of 3xTg‐AD mice.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 3, p. 1, doi. 10.1002/alz.054648
By:
- Cope, Emily K;
- Borsom, Emily M;
- Bolyen, Evan K;
- Jaramillo, Sierra A;
- Conn, Kathryn A;
- Dillon, Matthew R;
- Orsini, Gabrielle M;
- Hirsch, Allyson H;
- Lee, Keehoon;
- Caporaso, J. Gregory
Publication type:
Article
A longitudinal study of the unique gut microbiota of 3xTg‐AD mice modeling key AD pathologies.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 3, p. 1, doi. 10.1002/alz.054633
By:
- Borsom, Emily M;
- Keefe, Christopher R;
- Hirsch, Allyson H;
- Orsini, Gabrielle M;
- Conn, Kathryn A;
- Jaramillo, Sierra A;
- Testo, George;
- Avila, Melanie Palma;
- Bolyen, Evan K;
- Dillon, Matthew R;
- Lee, Keehoon;
- Caporaso, J. Gregory;
- Cope, Emily K
Publication type:
Article
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Correction Notice
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Letter
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.
Published in:
GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0133-6
By:
- Rideout, Jai Ram;
- Chase, John H.;
- Bolyen, Evan;
- Ackermann, Gail;
- González, Antonio;
- Knight, Rob;
- Caporaso, J. Gregory
Publication type:
Article
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009056
By:
- Dillon, Matthew R.;
- Bolyen, Evan;
- Adamov, Anja;
- Belk, Aeriel;
- Borsom, Emily;
- Burcham, Zachary;
- Debelius, Justine W.;
- Deel, Heather;
- Emmons, Alex;
- Estaki, Mehrbod;
- Herman, Chloe;
- Keefe, Christopher R.;
- Morton, Jamie T.;
- Oliveira, Renato R. M.;
- Sanchez, Andrew;
- Simard, Anthony;
- Vázquez-Baeza, Yoshiki;
- Ziemski, Michal;
- Miwa, Hazuki E.;
- Kerere, Terry A.
Publication type:
Article
Facilitating bioinformatics reproducibility with QIIME 2 provenance Replay.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 11, p. 1, doi. 10.1371/journal.pcbi.1011676
By:
- Keefe, Christopher R.;
- Dillon, Matthew R.;
- Gehret, Elizabeth;
- Herman, Chloe;
- Jewell, Mary;
- Wood, Colin V.;
- Bolyen, Evan;
- Caporaso, J. Gregory
Publication type:
Article
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0470-z
By:
- Bokulich, Nicholas A.;
- Kaehler, Benjamin D.;
- Rideout, Jai Ram;
- Dillon, Matthew;
- Bolyen, Evan;
- Knight, Rob;
- Huttley, Gavin A.;
- Gregory Caporaso, J.
Publication type:
Article

Found: 11