Works matching AU Boer, Judith M

Results: 30

Can subtle changes in gene expression be consistently detected with different microarray platforms?

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-124

By:

Pedotti, Paola;
't Hoen, Peter A. C.;
Vreugdenhil, Erno;
Schenk, Geert J.;
Vossen, Rolf H. A. M.;
Ariyurek, Yavuz;
de Hollander, Mattias;
Kuiper, Rowan;
van Ommen, Gertjan J. B.;
den Dunnen, Johan T.;
Boer, Judith M.;
de Menezes, Renée X.

Publication type:

Article

Gene expression variation between mouse inbred strains.

Published in:

BMC Genomics, 2004, v. 5, p. 57, doi. 10.1186/1471-2164-5-57

By:

Turk, Rolf;
AC 't Hoen, Peter;
Sterrenburg, Ellen;
De Menezes, Renée X.;
De Meijer, Emile J.;
Boer, Judith M.;
Van Ommen, Gert-Jan B.;
Den Dunnen, Johan T.

Publication type:

Article

Early onset MSI-H colon cancer with MLH1promoter methylation, is there a geneticpredisposition?

Published in:

BMC Cancer, 2010, v. 10, p. 180, doi. 10.1186/1471-2407-10-180

By:

van Roon, Eddy H. J.;
van Puijenbroek, Marjo;
Middeldorp, Anneke;
van Eijk, Ronald;
de Meijer, Emile J.;
Erasmus, Dianhdra;
Wouters, Kim A. D.;
van Engeland, Manon;
Oosting, Jan;
Hes, Frederik J.;
Tops, Carli M. J.;
van Wezel, Tom;
Boer, Judith M.;
Morreau, Hans

Publication type:

Article

Human Papillomavirus (HPV) Upregulates the Cellular Deubiquitinase UCHL1 to Suppress the Keratinocyte's Innate Immune Response

Published in:

PLoS Pathogens, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.ppat.1003384

By:

Karim, Rezaul;
Tummers, Bart;
Meyers, Craig;
Biryukov, Jennifer L.;
Alam, Samina;
Backendorf, Claude;
Jha, Veena;
Offringa, Rienk;
van Ommen, Gert-Jan B.;
Melief, Cornelis J. M.;
Guardavaccaro, Daniele;
Boer, Judith M.;
van der Burg, Sjoerd H.

Publication type:

Article

The Homeobox Gene MEIS1 Is Methylated in BRAFp.V600E Mutated Colon Tumors.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079898

By:

Dihal, Ashwin A.;
Boot, Arnoud;
van Roon, Eddy H.;
Schrumpf, Melanie;
Fariña-Sarasqueta, Arantza;
Fiocco, Marta;
Zeestraten, Eliane C. M.;
Kuppen, Peter J. K.;
Morreau, Hans;
van Wezel, Tom;
Boer, Judith M.

Publication type:

Article

Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0027759

By:

Passtoors, Willemijn M.;
Boer, Judith M.;
Goeman, Jelle J.;
van den Akker, Erik B.;
Deelen, Joris;
Zwaan, Bas J.;
Scarborough, Ann;
van der Breggen, Ruud;
Vossen, Rolf H. A. M.;
Houwing-Duistermaat, Jeanine J.;
van Ommen, Gert Jan B.;
Westendorp, Rudi G. J.;
van Heemst, Diana;
de Craen, Anton J. M.;
White, Andrew J.;
Gunn, David A.;
Beekman, Marian;
Slagboom, P. Eline

Publication type:

Article

Human Papillomavirus Deregulates the Response of a Cellular Network Comprising of Chemotactic and Proinflammatory Genes.

Published in:

PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017848

By:

Karim, Rezaul;
Meyers, Craig;
Backendorf, Claude;
Ludigs, Kristina;
Offringa, Rienk;
van Ommen, Gert-Jan B.;
Melief, Cornelis J. M.;
van der^Burg, Sjoerd H.;
Boer, Judith M.

Publication type:

Article

Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0926-8

By:

Menezes, Renée X.;
Mohammadi, Leila;
Goeman, Jelle J.;
Boer, Judith M.

Publication type:

Article

General power and sample size calculations for high-dimensional genomic data.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 4, p. 449, doi. 10.1515/sagmb-2012-0046

By:

van Iterson, Maarten;
van de Wiel, Mark A.;
Boer, Judith M.;
de Menezes, Renée X.

Publication type:

Article

A Novel and Fast Normalization Method for High-Density Arrays.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 4, p. -1, doi. 10.1515/1544-6115.1753

By:

van Iterson, Maarten;
Duijkers, Floor A.M.;
Meijerink, Jules P.P.;
Admiraal, Pieter;
van Ommen, Gert-Jan B.;
Boer, Judith M.;
van Noesel, Max M.;
Menezes, Renee X.

Publication type:

Article

Integrating copy number data of 64 iAMP21 BCP-ALL patients narrows the common region of amplification to 1.57 Mb.

Published in:

Frontiers in Oncology, 2023, v. 13, p. 1, doi. 10.3389/fonc.2023.1128560

By:

Hormann, Femke M.;
Hoogkamer, Alex Q.;
Boeree, Aurélie;
Sonneveld, Edwin;
Escherich, Gabriele;
den Boer, Monique L.;
Boer, Judith M.

Publication type:

Article

Pediatric Precursor B-Cell Lymphoblastic Malignancies: From Extramedullary to Medullary Involvement.

Published in:

Cancers, 2022, v. 14, n. 16, p. 3895, doi. 10.3390/cancers14163895

By:

Kroeze, Emma;
Arias Padilla, Laura;
Bakker, Max;
Boer, Judith M.;
Hagleitner, Melanie M.;
Burkhardt, Birgit;
Mori, Takeshi;
Attarbaschi, Andishe;
Verdú-Amorós, Jaime;
Pillon, Marta;
Anderzhanova, Liliya;
Kabíčková, Edita;
Chiang, Alan K. S.;
Kebudi, Rejin;
Mellgren, Karin;
Lazic, Jelena;
Jazbec, Janez;
Meijerink, Jules P. P.;
Beishuizen, Auke;
Loeffen, Jan L. C.

Publication type:

Article

Tumour-specific methylation of PTPRG intron 1 locus in sporadic and Lynch syndrome colorectal cancer.

Published in:

European Journal of Human Genetics, 2011, v. 19, n. 3, p. 307, doi. 10.1038/ejhg.2010.187

By:

van Roon, Eddy H. J.;
de Miranda, Noël F. C. C.;
van Nieuwenhuizen, Merlijn P.;
de Meijer, Emile J.;
van Puijenbroek, Marjo;
Yan, Pearlly S.;
Huang, Tim H.-M.;
van Wezel, Tom;
Morreau, Hans;
Boer, Judith M.

Publication type:

Article

The impact of an additional copy of chromosome 21 in B‐cell precursor acute lymphoblastic leukemia.

Published in:

Genes, Chromosomes & Cancer, 2024, v. 63, n. 1, p. 1, doi. 10.1002/gcc.23217

By:

Hormann, Femke M.;
Mooij, Eva J.;
van de Mheen, Marieke;
Beverloo, H. Berna;
den Boer, Monique L.;
Boer, Judith M.

Publication type:

Article

CD40-Mediated Amplification of Local Immunity by Epithelial Cells Is Impaired by HPV.

Published in:

Journal of Investigative Dermatology, 2014, v. 134, n. 12, p. 2918, doi. 10.1038/jid.2014.262

By:

Tummers, Bart;
Goedemans, Renske;
Jha, Veena;
Meyers, Craig;
Melief, Cornelis J M;
van der Burg, Sjoerd H;
Boer, Judith M

Publication type:

Article

A risk score including microdeletions improves relapse prediction for standard and medium risk precursor B‐cell acute lymphoblastic leukaemia in children.

Published in:

British Journal of Haematology, 2018, v. 180, n. 4, p. 550, doi. 10.1111/bjh.15056

By:

Sutton, Rosemary;
Venn, Nicola C.;
Law, Tamara;
Boer, Judith M.;
Trahair, Toby N.;
Ng, Anthea;
Den Boer, Monique L.;
Dissanayake, Anuruddhika;
Giles, Jodie E.;
Dalzell, Pauline;
Mayoh, Chelsea;
Barbaric, Draga;
Revesz, Tamas;
Alvaro, Frank;
Pieters, Rob;
Haber, Michelle;
Norris, Murray D.;
Schrappe, Martin;
Dalla Pozza, Luciano;
Marshall, Glenn M.

Publication type:

Article

The interferon-related developmental regulator 1 is used by human papillomavirus to suppress NFκB activation.

Published in:

Nature Communications, 2015, v. 6, n. 3, p. 6537, doi. 10.1038/ncomms7537

By:

Tummers, Bart;
Goedemans, Renske;
Pelascini, Laetitia P. L.;
Jordanova, Ekaterina S.;
van Esch, Edith M. G.;
Meyers, Craig;
Melief, Cornelis J. M.;
Boer, Judith M.;
van der Burg, Sjoerd H.

Publication type:

Article

Fibroblast growth factor receptor signaling in pediatric B-cell precursor acute lymphoblastic leukemia.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-38169-z

By:

Jerchel, Isabel S.;
Hoogkamer, Alex Q.;
Ariës, Ingrid M.;
Boer, Judith M.;
Besselink, Nicolle J. M.;
Koudijs, Marco J.;
Pieters, Rob;
den Boer, Monique L.

Publication type:

Article

Human Papillomavirus Downregulates the Expression of IFITM1 and RIPK3 to Escape from IFNγ- and TNFα-Mediated Antiproliferative Effects and Necroptosis.

Published in:

Frontiers in Immunology, 2016, v. 7, p. 1, doi. 10.3389/fimmu.2016.00496

By:

Wenbo Ma;
Tummers, Bart;
van Esch, Edith M. G.;
Goedemans, Renske;
Melief, Cornelis J. M.;
Meyers, Craig;
Boer, Judith M.;
van der Burg, Sjoerd H.;
Jacobs, Nathalie;
Hess, Jochen

Publication type:

Article

Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 19, p. e146, doi. 10.1093/nar/gnh142

By:

Cardoso, Joana;
Molenaar, Lia;
de Menezes, Renée X.;
Rosenberg, Carla;
Morreau, Hans;
Möslein, Gabriela;
Fodde, Riccardo;
Boer, Judith M.

Publication type:

Article

Intensity‐based analysis of two‐colour microarrays enables efficient and flexible hybridization designs.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 4, p. e41

By:

’t Hoen, Peter A. C.;
Turk, Rolf;
Boer, Judith M.;
Sterrenburg, Ellen;
de Menezes, Renée X.;
van Ommen, Gert‐Jan B.;
den Dunnen, Johan T.

Publication type:

Article

A common reference for cDNA microarray hybridizations.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 21, p. e116, doi. 10.1093/nar/gnf115

By:

Sterrenburg, Ellen;
Turk, Rolf;
Boer, Judith M.;
van Ommen, Gertjan B.;
den Dunnen, Johan T.

Publication type:

Article

ALLTogether recommendations for biobanking samples from patients with acute lymphoblastic leukaemia: a modified Delphi study: Clinical Studies.

Published in:

British Journal of Cancer, 2025, v. 132, n. 6, p. 493, doi. 10.1038/s41416-025-02958-x

By:

Trinquand, Amélie;
Leveson, James;
Barbosa, Ana Lúcia;
Gameiro, Paula;
Vesterinen, Tiina;
Lammens, Tim;
Drost, Thomas;
Moorman, Anthony V.;
de Haas, Valérie;
Bond, Jonathan;
Boer, Judith M.;
Persoon, Marion;
Thomson, Anne;
Bergenstråhle, Karolin;
Thastrup, Maria;
zur Stadt, Udo;
Behrmann, Lena;
Uyttebroeck, Anne;
Caye, Aurélie;
Strullu, Marion

Publication type:

Article

A test for comparing two groups of samples when analyzing multiple omics profiles.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-236

By:

Chaturvedi, Nimisha;
Goeman, Jelle J.;
Boer, Judith M.;
van Wieringen, Wessel N.;
de Menezes, Renée X.

Publication type:

Article

Filtering, FDR and power.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 450, doi. 10.1186/1471-2105-11-450

By:

van Iterson, Maarten;
Boer, Judith M.;
Menezes, Renée X.

Publication type:

Article

RNA expression profiling in brains of familial hemiplegic migraine type 1 knock-in mice.

Published in:

Cephalalgia, 2014, v. 34, n. 3, p. 174, doi. 10.1177/0333102413502736

By:

Vries, Boukje de;
Eising, Else;
Broos, Ludo AM;
Koelewijn, Stephany C;
Todorov, Boyan;
Frants, Rune R;
Boer, Judith M;
Ferrari, Michel D;
Hoen, Peter AC ‘t;
Maagdenberg, Arn MJM van den

Publication type:

Article

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e146, doi. 10.1093/nar/gkt525

By:

van Iterson, Maarten;
Bervoets, Sander;
de Meijer, Emile J.;
Buermans, Henk P.;
’t Hoen, Peter A. C.;
Menezes, Renée X.;
Boer, Judith M.

Publication type:

Article

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 21, p. e141, doi. 10.1093/nar/gkn705

By:

't Hoen, Peter A. C.;
Ariyurek, Yavuz;
Thygesen, Helene H.;
Vreugdenhil, Erno;
Vossen, Rolf H. A. M.;
de Menezes, Renée X.;
Boer, Judith M.;
van Ommen, Gert-Jan B.;
den Dunnen, Johan T.

Publication type:

Article

IKZF1 in acute lymphoblastic leukemia: the rise before the fall?

Published in:

Leukemia & Lymphoma, 2024, v. 65, n. 14, p. 2077, doi. 10.1080/10428194.2024.2396046

By:

Østergaard, Anna;
Boer, Judith M.;
van Leeuwen, Frank N.;
Pieters, Rob;
Den Boer, Monique L.

Publication type:

Article

MicroRNA signature in BCR-ABL1-like and BCR-ABL1-positive childhood acute lymphoblastic leukemia: similarities and dissimilarities.

Published in:

Leukemia & Lymphoma, 2014, v. 55, n. 8, p. 1942, doi. 10.3109/10428194.2013.858813

By:

Akbari Moqadam, Farhad;
Lange-Turenhout, Ellen A. M.;
van der Veer, Arian;
Marchante, João R. M.;
Boer, Judith M.;
Pieters, Rob;
den Boer, Monique

Publication type:

Article