Works by Boelens, Rolf

Results: 80

Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain.

Published in:

Epigenetics & Chromatin, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-8935-6-12

By:

van Nuland, Rick;
van Schaik, Frederik M.A.;
Simonis, Marieke;
van Heesch, Sebastiaan;
Cuppen, Edwin;
Boelens, Rolf;
Timmers, H. T. Marc;
van Ingen, Hugo

Publication type:

Article

Mapping the fMet-tRNAfMet binding site of initiation factor IF2.

Published in:

EMBO Journal, 2000, v. 19, n. 19, p. 5233, doi. 10.1093/emboj/19.19.5233

By:

Guenneugues, Marc;
Caserta, Enrico;
Brandi, Letizia;
Spurio, Roberto;
Meunier, Sylvie;
Pon, Cynthia L.;
Boelens, Rolf;
Gualerzi, Claudio O.

Publication type:

Article

Structure of the fMet-tRNAfMet-binding domain of B.stearothermophilus initiation factor IF2.

Published in:

EMBO Journal, 2000, v. 19, n. 8, p. 1918, doi. 10.1093/emboj/19.8.1918

By:

Meunier, Sylvie;
Spurio, Roberto;
Czisch, Michael;
Wechselberger, Rainer;
Guenneugues, Marc;
Gualerzi, Claudio O.;
Boelens, Rolf

Publication type:

Article

Hinge-helix formation and DNA bending in various lac repressor-operator complexes.

Published in:

EMBO Journal, 1999, v. 18, n. 22, p. 6472, doi. 10.1093/emboj/18.22.6472

By:

Spronk, Christian A. E. M.;
Folkers, Gert E.;
Noordman, Anne-Marie G. W.;
Wechselberger, Rainer;
Van Den Brink, Nienke;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif.

Published in:

EMBO Journal, 1997, v. 16, n. 6, p. 1436, doi. 10.1093/emboj/16.6.1436

By:

Sette, Marco;
van Tilborg, Paul;
Spurio, Roberto;
Kaptein, Robert;
Paci, Maurizio;
Gualerzi, Claudio O.;
Boelens, Rolf

Publication type:

Article

Block Copolymer Micelles with an Intermediate Star-/Flower-Like Structure Studied by 1H NMR Relaxometry.

Published in:

Macromolecular Chemistry & Physics, 2014, v. 215, n. 9, p. 915, doi. 10.1002/macp.201300753

By:

Weiss, Jan;
Wienk, Hans;
Boelens, Rolf;
Laschewsky, André

Publication type:

Article

Nicolaas Bloembergen: a pioneer in magnetic resonance and in maser and laser physics.

Published in:

Journal of Biomolecular NMR, 2017, v. 69, n. 3, p. 181, doi. 10.1007/s10858-017-0143-4

By:

Kaptein, Rob;
Boelens, Rolf;
Luchinat, Claudio

Publication type:

Article

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Published in:

2016

By:

Vavrinská, Andrea;
Zelinka, Jiří;
Šebera, Jakub;
Sychrovský, Vladimír;
Fiala, Radovan;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Erratum

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Published in:

Journal of Biomolecular NMR, 2016, v. 64, n. 1, p. 53, doi. 10.1007/s10858-015-0005-x

By:

Vavřinská, Andrea;
Zelinka, Jiří;
Šebera, Jakub;
Sychrovský, Vladimír;
Fiala, Radovan;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Article

Insight into the conformational stability of membrane-embedded BamA using a combined solution and solid-state NMR approach.

Published in:

Journal of Biomolecular NMR, 2015, v. 61, n. 3/4, p. 321, doi. 10.1007/s10858-014-9891-6

By:

Sinnige, Tessa;
Houben, Klaartje;
Pritisanac, Iva;
Renault, Marie;
Boelens, Rolf;
Baldus, Marc

Publication type:

Article

A NMR guided approach for CsrA-RNA crystallization.

Published in:

Journal of Biomolecular NMR, 2013, v. 56, n. 1, p. 31, doi. 10.1007/s10858-013-9712-3

By:

Koharudin, Leonardus;
Boelens, Rolf;
Kaptein, Rob;
Gronenborn, Angela

Publication type:

Article

Sliding and target location of DNA-binding proteins:an NMR view of the lac repressor system.

Published in:

Journal of Biomolecular NMR, 2013, v. 56, n. 1, p. 41, doi. 10.1007/s10858-013-9723-0

By:

Loth, Karine;
Gnida, Manuel;
Romanuka, Julija;
Kaptein, Robert;
Boelens, Rolf

Publication type:

Article

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N chemical shielding anisotropy tensors.

Published in:

Journal of Biomolecular NMR, 2013, v. 55, n. 1, p. 59, doi. 10.1007/s10858-012-9686-6

By:

Emmer, Jiří;
Vavrinská, Andrea;
Sychrovský, Vladimír;
Benda, Ladislav;
Kříž, Zdeněk;
Koča, Jaroslav;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Article

Cys-Ph-TAHA: a lanthanide binding tag for RDC and PCS enhanced protein NMR.

Published in:

Journal of Biomolecular NMR, 2011, v. 51, n. 3, p. 329, doi. 10.1007/s10858-011-9560-y

By:

Peters, Fabian;
Maestre-Martinez, Mitcheell;
Leonov, Andrei;
Kovačič, Lidija;
Becker, Stefan;
Boelens, Rolf;
Griesinger, Christian

Publication type:

Article

Analysis of the XPA and ssDNA-binding surfaces on the central domain of human ERCC1 reveals evidence for subfunctionalization.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 17, p. 5789, doi. 10.1093/nar/gkm503

By:

Tripsianes, Konstantinos;
Folkers, Gert E.;
Zheng, Chao;
Das, Devashish;
Grinstead, Jeffrey S.;
Kaptein, Robert;
Boelens, Rolf

Publication type:

Article

Interactions of Kid–Kis toxin–antitoxin complexes with the parD operator-promoter region of plasmid R1 are piloted by the Kis antitoxin and tuned by the stoichiometry of Kid–Kis oligomers.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 5, p. 1737, doi. 10.1093/nar/gkm073

By:

Monti, Maria C.;
Hernández-Arriaga, Ana M.;
Kamphuis, Monique B.;
López-Villarejo, Juan;
Heck, Albert J. R.;
Boelens, Rolf;
Díaz-Orejas, Ramón;
van den Heuvel, Robert H. H.

Publication type:

Article

Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3317, doi. 10.1093/nar/gkl412

By:

van Dijk, Marc;
van Dijk, Aalt D. J.;
Hsu, Victor;
Boelens, Rolf;
Bonvin, Alexandre M. J. J.

Publication type:

Article

NMR structure calculation methods for large proteins Application of torsion angle dynamics and distance geometry/ simulated annealing to the 269-residue protein serine protease PB92.

Published in:

Molecular Physics, 1998, v. 95, n. 6, p. 1099, doi. 10.1080/002689798166125

By:

Karimi-Nejad, Yasmin;
Warren, Gregory L.;
Schipper, Dick;
Brunger, Axel T.;
Boelens, Rolf

Publication type:

Article

E. coli MG1655 modulates its phospholipid composition through the cell cycle.

Published in:

FEBS Letters, 2015, v. 589, n. 19PartB, p. 2726, doi. 10.1016/j.febslet.2015.07.043

By:

Furse, Samuel;
Wienk, Hans;
Boelens, Rolf;
de Kroon, Anton I.P.M.;
Killian, J. Antoinette

Publication type:

Article

Refined solution structure of the c-terminal DNA-binding domain of human immunovirus-1 integrase.

Published in:

Proteins, 1999, v. 36, n. 4, p. 556, doi. 10.1002/(SICI)1097-0134(19990901)36:4<556::AID-PROT18>3.0.CO;2-6

By:

Eijkelenboom, Astrid P.A.M.;
Sprangers, Remco;
Hård, Karl;
Puras Lutzke, Ramon A.;
Plasterk, Ronald H.A.;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

A model for the LexA repressor DNA complex.

Published in:

Proteins, 1995, v. 21, n. 3, p. 226, doi. 10.1002/prot.340210305

By:

Knegtel, Ronald M. A.;
Fogh, Rasmus H.;
Boelens, Rolf;
Kaptein, Robert;
Ottleben, Gunnar;
Rüterjans, Heinz;
Dumoulin, Pascal;
Schnarr, Manfred

Publication type:

Article

'Ensemble' iterative relaxation matrix approach: A new NMR refinement protocol applied to the solution structure of crambin.

Published in:

Proteins, 1993, v. 15, n. 4, p. 385, doi. 10.1002/prot.340150406

By:

Bonvin, Alexandre M. J. J.;
Rullmann, J. Antoon C.;
Lamerichs, Rolf M. J. N.;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

Mechanism of 3 D domain swapping in bovine seminal ribonuclease.

Published in:

FEBS Journal, 2014, v. 281, n. 3, p. 842, doi. 10.1111/febs.12651

By:

Spadaccini, Roberta;
Ercole, Carmine;
Graziano, Giuseppe;
Wechselberger, Rainer;
Boelens, Rolf;
Picone, Delia

Publication type:

Article

parD toxin–antitoxin system of plasmid R1 – basic contributions, biotechnological applications and relationships with closely-related toxin–antitoxin systems.

Published in:

FEBS Journal, 2010, v. 277, n. 15, p. 3097, doi. 10.1111/j.1742-4658.2010.07722.x

By:

Diago-Navarro, Elizabeth;
Hernandez-Arriaga, Ana M.;
López-Villarejo, Juan;
Muñoz-Gómez, Ana J.;
Kamphuis, Monique B.;
Boelens, Rolf;
Lemonnier, Marc;
Díaz-Orejas, Ramón

Publication type:

Article

A mutagenic analysis of the RNase mechanism of the bacterial Kid toxin by mass spectrometry.

Published in:

FEBS Journal, 2009, v. 276, n. 17, p. 4973, doi. 10.1111/j.1742-4658.2009.07199.x

By:

Diago-Navarro, Elizabeth;
Kamphuis, Monique B.;
Boelens, Rolf;
Barendregt, Arjan;
Heck, Albert J.;
van den Heuvel, Robert H.;
Díaz-Orejas, Ramón

Publication type:

Article

Data-driven docking for the study of biomolecular complexes.

Published in:

FEBS Journal, 2005, v. 272, n. 2, p. 293, doi. 10.1111/j.1742-4658.2004.04473.x

By:

van Dijk, Aalt D. J.;
Boelens, Rolf;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Molecular Organization of Various Collagen Fragments as Revealed by Atomic Force Microscopy and Diffusion-Ordered NMR Spectroscopy.

Published in:

ChemPhysChem, 2012, v. 13, n. 13, p. 3117, doi. 10.1002/cphc.201200284

By:

Stötzel, Sabine;
Schurink, Marloes;
Wienk, Hans;
Siebler, Uschi;
Burg-Roderfeld, Monika;
Eckert, Thomas;
Kulik, Bianca;
Wechselberger, Rainer;
Sewing, Judith;
Steinmeyer, Jürgen;
Oesser, Steffen;
Boelens, Rolf;
Siebert, Hans-Christian

Publication type:

Article

Cover Picture: Molecular Organization of Various Collagen Fragments as Revealed by Atomic Force Microscopy and Diffusion-Ordered NMR Spectroscopy (ChemPhysChem 13/2012).

Published in:

ChemPhysChem, 2012, v. 13, n. 13, p. 3065, doi. 10.1002/cphc.201290060

By:

Stötzel, Sabine;
Schurink, Marloes;
Wienk, Hans;
Siebler, Uschi;
Burg-Roderfeld, Monika;
Eckert, Thomas;
Kulik, Bianca;
Wechselberger, Rainer;
Sewing, Judith;
Steinmeyer, Jürgen;
Oesser, Steffen;
Boelens, Rolf;
Siebert, Hans-Christian

Publication type:

Article

Introduction to a special issue of Magnetic Resonance in honour of Robert Kaptein at the occasion of his 80th birthday.

Published in:

Magnetic Resonance, 2021, v. 2, n. 1, p. 465, doi. 10.5194/mr-2-465-2021

By:

Boelens, Rolf;
Ivanov, Konstantin;
Matysik, Jörg

Publication type:

Article

Use of graph theory for secondary structure recognition and sequential assignment in heteronuclear (.

Published in:

Biopolymers, 1996, v. 39, n. 5, p. 691, doi. 10.1002/(SICI)1097-0282(199611)39:5<691::AID-BIP8>3.0.CO;2-R

By:

van Geerestein-Ujah, Elizabeth C.;
Mariani, Matteo;
Vis, Hans;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

Hydrogen exchange studies of the Arc repressor: Evidence for a monomeric folding intermediate.

Published in:

Biopolymers, 1995, v. 35, n. 2, p. 217, doi. 10.1002/bip.360350210

By:

Burgering, Maurits J. M.;
Hald, Mogens;
Boelens, Rolf;
Breg, Jan N.;
Kaptein, Robert

Publication type:

Article

Direct nuclear Overhauser effect refinement of crambin from two-dimensional nmr data using a slow-cooling annealing protocol.

Published in:

Biopolymers, 1994, v. 34, n. 1, p. 39, doi. 10.1002/bip.360340106

By:

Bonvin, Alexandre M. J. J.;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

A novel µ-conopeptide, CnIIIC, exerts potent and preferential inhibition of NaV1.2/1.4 channels and blocks neuronal nicotinic acetylcholine receptors.

Published in:

British Journal of Pharmacology, 2012, v. 166, n. 5, p. 1654, doi. 10.1111/j.1476-5381.2012.01837.x

By:

Favreau, Philippe;
Benoit, Evelyne;
Hocking, Henry G;
Carlier, Ludovic;
D' hoedt, Dieter;
Leipold, Enrico;
Markgraf, René;
Schlumberger, Sébastien;
Córdova, Marco A;
Gaertner, Hubert;
Paolini-Bertrand, Marianne;
Hartley, Oliver;
Tytgat, Jan;
Heinemann, Stefan H;
Bertrand, Daniel;
Boelens, Rolf;
Stöcklin, Reto;
Molgó, Jordi

Publication type:

Article

A model for the interaction of the G3-subdomain of Geobacillus stearothermophilus IF2 with the 30S ribosomal subunit.

Published in:

Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 9, p. 1722, doi. 10.1002/pro.2977

By:

Dongre, Ramachandra;
Folkers, Gert E.;
Gualerzi, Claudio O.;
Boelens, Rolf;
Wienk, Hans

Publication type:

Article

Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: Factors contributing to increased activity retention.

Published in:

Protein Science: A Publication of the Protein Society, 2012, v. 21, n. 4, p. 487, doi. 10.1002/pro.2031

By:

Augustyniak, Wojciech;
Brzezinska, Agnieszka A.;
Pijning, Tjaard;
Wienk, Hans;
Boelens, Rolf;
Dijkstra, Bauke W.;
Reetz, Manfred T.

Publication type:

Article

Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 8, p. 1915, doi. 10.1110/ps.062213706

By:

Sibille, Nathalie;
Favier, Adrien;
Azuaga, Ana I.;
Ganshaw, Grant;
Bott, Richard;
Bonvin, Alexandre M.J.J.;
Boelens, Rolf;
van Nuland, Nico A.J.

Publication type:

Article

Cooperative α-helix unfolding in a protein-DNA complex from hydrogen-deuterium exchange.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 7, p. 1752, doi. 10.1110/ps.051938006

By:

Salinas, Roberto K.;
Diercks, Tammo;
Kaptein, Robert;
Boelens, Rolf

Publication type:

Article

Solution structure of the C1-subdomain of Bacillus stearothermophilus translation initiation factor IF2.

Published in:

Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 9, p. 2461, doi. 10.1110/ps.051531305

By:

Wienk, Hans;
Tomaselli, Simona;
Bernard, Cédric;
Spurio, Roberto;
Picone, Delia;
Gualerzi, Claudio O.;
Boelens, Rolf

Publication type:

Article

An alternate conformation of the hyperthermostable HU protein from Thermotoga maritima has unexpectedly high flexibility

Published in:

FEBS Letters, 2004, v. 563, n. 1-3, p. 49, doi. 10.1016/S0014-5793(04)00247-9

By:

Durney, Michael A.;
Wechselberger, Rainer W.;
Kalodimos, Charalampos G.;
Kaptein, Robert;
Vorgias, Constantinos E.;
Boelens, Rolf

Publication type:

Article

The basic helix-loop-helix region of the transcriptional repressor hairy and enhancer of split 1 is preorganized to bind DNA.

Published in:

Proteins, 2014, v. 82, n. 4, p. 537, doi. 10.1002/prot.24507

By:

Popovic, Matija;
Wienk, Hans;
Coglievina, Maristella;
Boelens, Rolf;
Pongor, Sándor;
Pintar, Alessandro

Publication type:

Article

Quantitative use of chemical shifts for the modeling of protein complexes.

Published in:

Proteins, 2011, v. 79, n. 9, p. 2662, doi. 10.1002/prot.23090

By:

Stratmann, Dirk;
Boelens, Rolf;
Bonvin, Alexandre M. J. J.

Publication type:

Article

MINOES: A new approach to select a representative ensemble of structures in NMR studies of (partially) unfolded states. Application to Δ25-PYP.

Published in:

Proteins, 2009, v. 74, n. 4, p. 895, doi. 10.1002/prot.22197

By:

Krzeminski, Mickaël;
Fuentes, Gloria;
Boelens, Rolf;
Bonvin, Alexandre M.J.J.

Publication type:

Article

The HhH domain of the human DNA repair protein XPF forms stable homodimers.

Published in:

Proteins, 2008, v. 70, n. 4, p. 1551, doi. 10.1002/prot.21635

By:

Das, Devashish;
Tripsianes, Konstantinos;
Jaspers, Nicolaas G. J.;
Hoeijmakers, Jan H. J.;
Kaptein, Robert;
Boelens, Rolf;
Folkers, Gert E.

Publication type:

Article

Interactions between the toxin Kid of the bacterial parD system and the antitoxins Kis and MazE.

Published in:

Proteins, 2007, v. 67, n. 1, p. 219, doi. 10.1002/prot.21254

By:

Kamphuis, Monique B.;
Monti, Maria Chiara;
van den Heuvel, Robert H. H.;
Santos-Sierra, Sandra;
Folkers, Gert E.;
Lemonnier, Marc;
Díaz-Orejas, Ramón;
Heck, Albert J. R.;
Boelens, Rolf

Publication type:

Article

Structural and dynamic changes of photoactive yellow protein during its photocycle in solution.

Published in:

Nature Structural Biology, 1998, v. 5, n. 7, p. 568, doi. 10.1038/823

By:

Rubinstenn, Gilles;
Vuister, Geerten W.;
Mulder, Frans A. A.;
Düx, Petra E.;
Boelens, Rolf;
Hellingwerf, Klaas J.;
Kaptein, Robert

Publication type:

Article

The Solution Structure of the AppA BLUF Domain: Insight into the Mechanism of Light-Induced Signaling.

Published in:

ChemBioChem, 2006, v. 7, n. 1, p. 187, doi. 10.1002/cbic.200500270

By:

Jeffrey S. Grinstead;
Shang-Te D. Hsu;
Wouter Laan;
Alexandre M. J. J. Bonvin;
Klaas J. Hellingwerf;
Rolf Boelens;
Robert Kaptein

Publication type:

Article

Altered Specificity in DNA Binding by the lac Repressor: A Mutant lac Headpiece that Mimics the gal Repressor.

Published in:

ChemBioChem, 2005, v. 6, n. 9, p. 1628, doi. 10.1002/cbic.200500049

By:

Roberto Kopke Salinas;
Gert E. Folkers;
Alexandre M. J. J. Bonvin;
Devashish Das;
Rolf Boelens;
Robert Kaptein

Publication type:

Article

Molecular Basis of the Receptor Interactions of Polysialic Acid (polySia), polySia Mimetics, and Sulfated Polysaccharides.

Published in:

ChemMedChem, 2016, v. 11, n. 9, p. 990, doi. 10.1002/cmdc.201500609

By:

Zhang, Ruiyan;
Loers, Gabriele;
Schachner, Melitta;
Boelens, Rolf;
Wienk, Hans;
Siebert, Simone;
Eckert, Thomas;
Kraan, Stefan;
Rojas‐Macias, Miguel A.;
Lütteke, Thomas;
Galuska, Sebastian P.;
Scheidig, Axel;
Petridis, Athanasios K.;
Liang, Songping;
Billeter, Martin;
Schauer, Roland;
Steinmeyer, Jürgen;
Schröder, Jens‐Michael;
Siebert, Hans‐Christian

Publication type:

Article

A residue-specific view of the association and dissociation pathway in protein?DNA recognition.

Published in:

Nature Structural Biology, 2002, v. 9, n. 3, p. 193

By:

Kalodimos, Charalampos G.;
Boelens, Rolf;
Kaptein, Robert

Publication type:

Article

The tetramerization domain of the Mnt repressor consists of two right-handed coiled coils.

Published in:

Nature Structural Biology, 1999, v. 6, n. 8, p. 755

By:

Nooren, Irene M.A.;
Kaptein, Robert;
Sauer, Robert T.;
Boelens, Rolf

Publication type:

Article