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Detection and classification of the integrative conjugative elements of Lactococcus lactis.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10255-9
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- Article
Mothers' Breast Milk Composition and Their Respective Infant's Gut Microbiota Differ between Five Distinct Rural and Urban Regions in Vietnam.
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- Nutrients, 2023, v. 15, n. 22, p. 4802, doi. 10.3390/nu15224802
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- Article
Impact of Sleeve Gastrectomy on Fecal Microbiota in Individuals with Morbid Obesity.
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- Microorganisms, 2023, v. 11, n. 9, p. 2353, doi. 10.3390/microorganisms11092353
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- Article
Resistome expansion in disease-associated human gut microbiomes.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01610-1
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- Article
Environmental microbes determine macrophage response towards saponin-induced inflammation in zebrafish larvae.
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- Water Biology & Security, 2023, v. 2, n. 3, p. 1, doi. 10.1016/j.watbs.2023.100187
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- Article
Endogenous small intestinal microbiome determinants of transient colonisation efficiency by bacteria from fermented dairy products: a randomised controlled trial.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01491-4
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- Article
Environmental and maternal factors shaping tonsillar microbiota development in piglets.
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- BMC Microbiology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12866-022-02625-8
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- Article
Prebiotic Galacto-Oligosaccharides Impact Stool Frequency and Fecal Microbiota in Self-Reported Constipated Adults: A Randomized Clinical Trial.
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- Nutrients, 2022, v. 14, n. 2, p. 309, doi. 10.3390/nu14020309
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- Article
Charting host-microbe co-metabolism in skin aging and application to metagenomics data.
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- PLoS ONE, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0258960
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- Article
Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01148-0
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- Article
Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01148-0
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- Article
Effect of low-iron micronutrient powder (MNP) on the composition of gut microbiota of Bangladeshi children in a high-iron groundwater setting: a randomized controlled trial.
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- European Journal of Nutrition, 2021, v. 60, n. 6, p. 3423, doi. 10.1007/s00394-021-02523-1
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- Article
Low gut microbiota diversity and dietary magnesium intake are associated with the development of ppi-induced hypomagnesemia.
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- Magnesium Research, 2021, v. 34, n. 3, p. 151
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- Article
Extensive Study of Breast Milk and Infant Growth: Protocol of the Cambridge Baby Growth and Breastfeeding Study (CBGS-BF).
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- Nutrients, 2021, v. 13, n. 8, p. 2879, doi. 10.3390/nu13082879
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- Article
Multi-Nutrient Fortified Dairy-Based Drink Reduces Anaemia without Observed Adverse Effects on Gut Microbiota in Anaemic Malnourished Nigerian Toddlers: A Randomised Dose–Response Study.
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- Nutrients, 2021, v. 13, n. 5, p. 1566, doi. 10.3390/nu13051566
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- Article
Skin microbiota in health and disease: From sequencing to biology.
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- Journal of Dermatology, 2020, v. 47, n. 10, p. 1110, doi. 10.1111/1346-8138.15536
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- Article
Correction: Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.
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- 2019
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- Correction Notice
A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-56065-y
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- Article
Maternal Human Milk Oligosaccharide Profile Modulates the Impact of an Intervention with Iron and Galacto-Oligosaccharides in Kenyan Infants.
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- Nutrients, 2019, v. 11, n. 11, p. 2596, doi. 10.3390/nu11112596
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- Article
Low gut microbiota diversity and dietary magnesium intake are associated with the development of PPI-induced hypomagnesemia.
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- FASEB Journal, 2019, v. 33, n. 10, p. 1, doi. 10.1096/fj.201900839R
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- Article
On the Role of Bioinformatics and Data Science in Industrial Microbiome Applications.
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- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00721
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- Article
Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.
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- PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219366
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- Article
Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation.
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- BMC Microbiology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12866-018-1249-x
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- Article
The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00092
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- Article
Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.
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- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0395-y
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- Article
Gut microbiome in ADHD and its relation to neural reward anticipation.
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- PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0183509
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- Article
Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL- 17- and TLR4-dependent arthritis.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0278-2
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- Article
Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups.
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- Molecular Nutrition & Food Research, 2017, v. 61, n. 1, p. n/a, doi. 10.1002/mnfr.201600141
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- Article
High-Level Heat Resistance of Spores of Bacillus amyloliquefaciens and Bacillus licheniformis Results from the Presence of a spoVA Operon in a Tn1546 Transposon.
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- Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01912
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- Article
A transposon present in specific strains of Bacillus subtilis negatively affects nutrient- and dodecylamine-induced spore germination.
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- Environmental Microbiology, 2016, v. 18, n. 12, p. 4830, doi. 10.1111/1462-2920.13386
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- Article
Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity.
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- PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0156796
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- Article
Microbial bioinformatics for food safety and production.
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- Briefings in Bioinformatics, 2016, v. 17, n. 2, p. 283, doi. 10.1093/bib/bbv034
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- Article
Identification of CdnL, a Putative Transcriptional Regulator Involved in Repair and Outgrowth of Heat-Damaged Bacillus cereus Spores.
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- PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148670
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- Article
Microbial Metabolism Shifts Towards an Adverse Profile with Supplementary Iron in the TIM-2 In vitro Model of the Human Colon.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01481
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- Article
Low dietary iron intake restrains the intestinal inflammatory response and pathology of enteric infection by food-borne bacterial pathogens.
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- European Journal of Immunology, 2015, v. 45, n. 9, p. 2553, doi. 10.1002/eji.201545642
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- Article
Comparative Genomics Analysis of <i>Streptococcus</i> Isolates from the Human Small Intestine Reveals their Adaptation to a Highly Dynamic Ecosystem.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0083418
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- Article
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-530
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- Article
<i>Lactobacillus paracasei</i> Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068731
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- Article
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
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- Briefings in Bioinformatics, 2013, v. 14, n. 3, p. 315, doi. 10.1093/bib/bbs034
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- Article
Genome Sequence of <i>Lactobacillus pentosus</i> KCA1: Vaginal Isolate from a Healthy Premenopausal Woman.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059239
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- Article
Microbiome dynamics of human epidermis following skin barrier disruption.
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- Genome Biology, 2012, v. 13, n. 11, p. 1, doi. 10.1186/gb-2012-13-11-r101
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- Article
Evaluating Experimental Bias and Completeness in Comparative Phosphoproteomics Analysis.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023276
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- Article
Searching in microbial genomes for encoded small proteins.
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- Microbial Biotechnology, 2011, v. 4, n. 3, p. 308, doi. 10.1111/j.1751-7915.2011.00261.x
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- Article
Tyrosine Phosphorylation Profiling in FGF-2 Stimulated Human Embryonic Stem Cells.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017538
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- Article
Comparative genomics of prevaccination and modern Bordetella pertussis strains.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-627
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- Article
Enrichment of homologs in insignificant BLASThits by co-complex network alignment.
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- BMC Bioinformatics, 2010, v. 11, p. 86, doi. 10.1186/1471-2105-11-86
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- Article
Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island.
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- BMC Genomics, 2010, v. 11, p. 239, doi. 10.1186/1471-2164-11-239
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- Article
Comparative genomics of prevaccination and modern Bordetella pertussis strains.
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- BMC Genomics, 2010, v. 11, p. 627, doi. 10.1186/1471-2164-11-627
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- Publication type:
- Article
LocateP: Genome-scale subcellular-location predictor for bacterial proteins.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-173
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- Article
Evolution of prokaryotic subtilases: Genome-wide analysis reveals novel subfamilies with different catalytic residues.
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- Proteins, 2007, v. 67, n. 3, p. 681, doi. 10.1002/prot.21290
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- Article