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Prediction of subcellular localization using sequence-biased recurrent networks.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2279, doi. 10.1093/bioinformatics/bti372
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- Publication type:
- Article
Crystal Structure of Rice Importin-α and Structural Basis of Its Interaction with Plant-Specific Nuclear Localization Signals.
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- Plant Cell, 2012, v. 24, n. 12, p. 5074, doi. 10.1105/tpc.112.104422
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- Publication type:
- Article
Mapping the stabilome: a novel computational method for classifying metabolic protein stability.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 60, doi. 10.1186/1752-0509-6-60
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- Publication type:
- Article
The proteins of intra-nuclear bodies: a datadriven analysis of sequence, interaction and expression.
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- BMC Systems Biology, 2010, v. 4, p. 44, doi. 10.1186/1752-0509-4-44
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- Publication type:
- Article
Repeat-encoded poly-Q tracts show statistical commonalities across species.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-76
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- Publication type:
- Article
Ancestral Sequence Reconstruction of a Cytochrome P450 Family Involved in Chemical Defense Reveals the Functional Evolution of a Promiscuous, Xenobiotic-Metabolizing Enzyme in Vertebrates.
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- Molecular Biology & Evolution, 2022, v. 39, n. 6, p. 1, doi. 10.1093/molbev/msac116
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- Publication type:
- Article
Robust Estimation of Evolutionary Distances with Information Theory.
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- Molecular Biology & Evolution, 2016, v. 33, n. 5, p. 1349, doi. 10.1093/molbev/msw019
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- Publication type:
- Article
Inferring cell diversity in single cell data using consortium-scale epigenetic data as a biological anchor for cell identity.
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- Nucleic Acids Research, 2023, v. 51, n. 11, p. e62, doi. 10.1093/nar/gkad307
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- Publication type:
- Article
PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-52
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- Publication type:
- Article
The value of position-specific priors in motif discovery using MEME.
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- BMC Bioinformatics, 2010, v. 11, p. 179, doi. 10.1186/1471-2105-11-179
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- Publication type:
- Article
Learning epistatic interactions from sequence-activity data to predict enantioselectivity.
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- Journal of Computer-Aided Molecular Design, 2017, v. 31, n. 12, p. 1085, doi. 10.1007/s10822-017-0090-x
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- Publication type:
- Article
Enhancing the Thermal and Kinetic Stability of Ketol-Acid Reductoisomerase, a Central Catalyst of a Cell-Free Enzyme Cascade for the Manufacture of Platform Chemicals.
- Published in:
- Applied Biosciences, 2022, v. 1, n. 2, p. 163, doi. 10.3390/applbiosci1020011
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- Publication type:
- Article
Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.
- Published in:
- Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00331
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- Publication type:
- Article
Statistical Enrichment of Epigenetic States Around Triplet Repeats that Can Undergo Expansions.
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- Frontiers in Neuroscience, 2016, p. 1, doi. 10.3389/fnins.2016.00092
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- Publication type:
- Article
COMPUTING THE REVERSAL DISTANCE BETWEEN GENOMES IN THE PRESENCE OF MULTI-GENE FAMILIES VIA BINARY INTEGER PROGRAMMING.
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- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 1, p. 117, doi. 10.1142/S0219720007002552
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- Publication type:
- Article
DETECTING AND SORTING TARGETING PEPTIDES WITH NEURAL NETWORKS AND SUPPORT VECTOR MACHINES.
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- Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 1, p. 1, doi. 10.1142/S0219720006001771
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- Publication type:
- Article
Structural and Functional Insight into the Mechanism of the Fe−S Cluster‐Dependent Dehydratase from Paralcaligenes ureilyticus.
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- Chemistry - A European Journal, 2023, v. 29, n. 9, p. 1, doi. 10.1002/chem.202203140
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- Publication type:
- Article
Sequencing technologies and tools for short tandem repeat variation detection.
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- Briefings in Bioinformatics, 2015, v. 16, n. 2, p. 193, doi. 10.1093/bib/bbu001
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- Publication type:
- Article
Development of a Highly Selective NAD<sup>+</sup>‐Dependent Glyceraldehyde Dehydrogenase and its Application in Minimal Cell‐Free Enzyme Cascades.
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- ChemSusChem, 2024, v. 17, n. 4, p. 1, doi. 10.1002/cssc.202301132
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- Publication type:
- Article
Optimal phylogenetic reconstruction of insertion and deletion events.
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- Bioinformatics, 2024, v. 40, p. i277, doi. 10.1093/bioinformatics/btae254
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- Publication type:
- Article
Cytocipher determines significantly different populations of cells in single-cell RNA-seq data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad435
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- Publication type:
- Article
T-Gene: improved target gene prediction.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3902, doi. 10.1093/bioinformatics/btaa227
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- Publication type:
- Article
SCRAM: a pipeline for fast index-free small RNA read alignment and visualization.
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- Bioinformatics, 2018, v. 34, n. 15, p. 2670, doi. 10.1093/bioinformatics/bty161
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- Publication type:
- Article
Distinctive Conformation of Minor Site-Specific Nuclear Localization Signals Bound to Importin-α.
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- Traffic, 2016, v. 17, n. 6, p. 704, doi. 10.1111/tra.12395
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- Publication type:
- Article
Granule neuron precursor cell proliferation is regulated by NFIX and intersectin 1 during postnatal cerebellar development.
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- Brain Structure & Function, 2019, v. 224, n. 2, p. 811, doi. 10.1007/s00429-018-1801-3
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- Publication type:
- Article
Cell-type-specific expression of NFIX in the developing and adult cerebellum.
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- Brain Structure & Function, 2017, v. 222, n. 5, p. 2251, doi. 10.1007/s00429-016-1340-8
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- Publication type:
- Article
Common Regulatory Targets of NFIA, NFIX and NFIB during Postnatal Cerebellar Development.
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- Cerebellum, 2020, v. 19, n. 1, p. 89, doi. 10.1007/s12311-019-01089-3
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- Publication type:
- Article
Distinctive Conformation of Minor Site-Specific Nuclear Localization Signals Bound to Importin-α.
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- Traffic, 2013, v. 14, n. 11, p. 1144, doi. 10.1111/tra.12098
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- Publication type:
- Article
Evolutionary model of protein secondary structure capable of revealing new biological relationships.
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- Proteins, 2020, v. 88, n. 9, p. 1251, doi. 10.1002/prot.25898
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- Article
In silico characterization of protein chimeras: Relating sequence and function within the same fold.
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- Proteins, 2009, v. 77, n. 1, p. 111, doi. 10.1002/prot.22422
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- Article
Identifying novel peroxisomal proteins.
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- Proteins, 2007, v. 69, n. 3, p. 606, doi. 10.1002/prot.21420
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- Publication type:
- Article
Detailed prediction of protein sub-nuclear localization.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2790-9
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- Publication type:
- Article
Variational autoencoding of gene landscapes during mouse CNS development uncovers layered roles of Polycomb Repressor Complex 2.
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- Nucleic Acids Research, 2022, v. 50, n. 3, p. 1280, doi. 10.1093/nar/gkac006
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- Publication type:
- Article
NLSdb--major update for database of nuclear localization signals and nuclear export signals.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D503, doi. 10.1093/nar/gkx1021
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- Publication type:
- Article
CISMAPPER: predicting regulatory interactions from transcription factor ChIP-seq data.
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- Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw956
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- Publication type:
- Article
Inferring short tandem repeat variation from paired-end short reads.
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- Nucleic Acids Research, 2014, v. 42, n. 3, p. e16, doi. 10.1093/nar/gkt1313
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- Publication type:
- Article
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.
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- Bioinformatics, 2017, v. 33, n. 12, p. 1773, doi. 10.1093/bioinformatics/btx072
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- Publication type:
- Article
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.
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- Bioinformatics, 2015, v. 31, n. 3, p. 382, doi. 10.1093/bioinformatics/btu663
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- Publication type:
- Article
DLocalMotif: a discriminative approach for discovering local motifs in protein sequences.
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- Bioinformatics, 2013, v. 29, n. 1, p. 39, doi. 10.1093/bioinformatics/bts654
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- Publication type:
- Article
Sorting the nuclear proteome.
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- Bioinformatics, 2011, v. 27, n. 13, p. i7, doi. 10.1093/bioinformatics/btr217
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- Publication type:
- Article
A probabilistic model of nuclear import of proteins.
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- Bioinformatics, 2011, v. 27, n. 9, p. 1239, doi. 10.1093/bioinformatics/btr121
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- Publication type:
- Article
Assigning roles to DNA regulatory motifs using comparative genomics.
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- Bioinformatics, 2010, v. 26, n. 7, p. 860, doi. 10.1093/bioinformatics/btq049
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- Publication type:
- Article
MEME Suite: tools for motif discovery and searching.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W202, doi. 10.1093/nar/gkp335
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- Publication type:
- Article
Associating transcription factor-binding site motifs with target GO terms and target genes.
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- Nucleic Acids Research, 2008, v. 36, n. 12, p. 4108, doi. 10.1093/nar/gkn374
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- Publication type:
- Article
Structure and Function of the TIR Domain from the Grape NLR Protein RPV1.
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- Frontiers in Plant Science, 2016, v. 7, p. 1, doi. 10.3389/fpls.2016.01850
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- Publication type:
- Article
The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases.
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- Biotechnology for Biofuels, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13068-019-1457-0
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- Publication type:
- Article
Correction to: Detailed prediction of protein sub-nuclear localization.
- Published in:
- 2019
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- Publication type:
- Correction Notice