Works by Bloom, Joshua S

Results: 33

Analysis of the genetic basis of height in large Jewish nuclear families.

Published in:

PLoS Genetics, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pgen.1008082

By:

Zeevi, Danny;
Bloom, Joshua S.;
Sadhu, Meru J.;
Ben Yehuda, Adi;
Zangen, David;
Levy-Lahad, Ephrat;
Kruglyak, Leonid

Publication type:

Article

No supernovae associated with two long-duration γ-ray bursts.

Published in:

Nature, 2006, v. 444, n. 7122, p. 1047, doi. 10.1038/nature05375

By:

Fynbo, Johan P. U.;
Watson, Darach;
Thöne, Christina C.;
Sollerman, Jesper;
Bloom, Joshua S.;
Davis, Tamara M.;
Hjorth, Jens;
Jakobsson, Páll;
Jørgensen, Uffe G.;
Graham, John F.;
Fruchter, Andrew S.;
Bersier, David;
Kewley, Lisa;
Cassan, Arnaud;
Cerón, José María Castro;
Foley, Suzanne;
Gorosabel, Javier;
Hinse, Tobias C.;
Horne, Keith D.;
Jensen, Brian L.

Publication type:

Article

Retrospective Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Symptomatic Patients Prior to Widespread Diagnostic Testing in Southern California.

Published in:

Clinical Infectious Diseases, 2022, v. 74, n. 2, p. 271, doi. 10.1093/cid/ciab360

By:

Hilt, Evann E;
Boocock, James;
Trejo, Marisol;
Le, Catherine Q;
Guo, Longhua;
Zhang, Yi;
Sathe, Laila;
Arboleda, Valerie A;
Yin, Yi;
Bloom, Joshua S;
Wang, Pin-Chieh;
Elmore, Joann G;
Kruglyak, Leonid;
Shrestha, Lasata;
Bakhash, Shah A Mohamed;
Lin, Michelle;
Xie, Hong;
Huang, Meei-Li;
Roychoudhury, Pavitra;
Greninger, Alexander

Publication type:

Article

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity.

Published in:

Nature Genetics, 2012, v. 44, n. 3, p. 285, doi. 10.1038/ng.1050

By:

Andersen, Erik C;
Gerke, Justin P;
Shapiro, Joshua A;
Crissman, Jonathan R;
Ghosh, Rajarshi;
Bloom, Joshua S;
Félix, Marie-Anne;
Kruglyak, Leonid

Publication type:

Article

Erratum: Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Published in:

2008

By:

Park, Christopher C.;
Sangtae Ahn;
Bloom, Joshua S.;
Lin, Andy;
Wang, Richard T.;
Tongtong Wu;
Sekar, Aswin;
Khan, Arshad H.;
Farr, Christine J.;
Lusis, Aldons J.;
Leahy, Richard M.;
Lange, Kenneth;
Smith, Desmond J.

Publication type:

Correction Notice

Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Published in:

Nature Genetics, 2008, v. 40, n. 4, p. 421, doi. 10.1038/ng.113

By:

Park, Christopher C.;
Sangtae Ahn;
Bloom, Joshua S.;
Lin, Andy;
Wang, Richard T.;
Tongtong Wu;
Sekar, Aswin;
Khan, Arshad H.;
Farr, Christine J.;
Lusis, Aldons J.;
Leahy, Richard M.;
Lange, Kenneth;
Smith, Desmond J.

Publication type:

Article

Genetic Mapping of MAPK-Mediated Complex Traits Across S. cerevisiae.

Published in:

PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004913

By:

Treusch, Sebastian;
Albert, Frank W.;
Bloom, Joshua S.;
Kotenko, Iulia E.;
Kruglyak, Leonid

Publication type:

Article

A Variant in the Neuropeptide Receptor npr-1 is a Major Determinant of Caenorhabditis elegans Growth and Physiology.

Published in:

PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004156

By:

Andersen, Erik C.;
Bloom, Joshua S.;
Gerke, Justin P.;
Kruglyak, Leonid

Publication type:

Article

Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08488-7

By:

Guo, Longhua;
Boocock, James;
Hilt, Evann E.;
Chandrasekaran, Sukantha;
Zhang, Yi;
Munugala, Chetan;
Sathe, Laila;
Alexander, Noah;
Arboleda, Valerie A.;
Flint, Jonathan;
Eskin, Eleazar;
Luo, Chongyuan;
Yang, Shangxin;
Garner, Omai B.;
Yin, Yi;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Whole-organism eQTL mapping at cellular resolution with single-cell sequencing.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.65857

By:

Ben-David, Eyal;
Boocock, James;
Guo, Longhua;
Zdraljevic, Stefan;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.

Published in:

Bioinformatics, 2009, v. 25, n. 13, p. 1609, doi. 10.1093/bioinformatics/btp275

By:

Zia Khan;
Joshua S. Bloom;
Leonid Kruglyak;
Mona Singh

Publication type:

Article

High-resolution deep mutational scanning of the melanocortin-4 receptor enables target characterization for drug discovery.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.104725

By:

Howard, Conor J.;
Abell, Nathan S.;
Osuna, Beatriz A.;
Jones, Eric M.;
Chan, Leon Y.;
Chan, Henry;
Artis, Dean R.;
Asfaha, Jonathan B.;
Bloom, Joshua S.;
Cooper, Aaron R.;
Liao, Andrew;
Mahdavi, Eden;
Mohammed, Nabil;
Su, Alan L.;
Uribe, Giselle A.;
Kosuri, Sriram;
Dickel, Diane E.;
Lubock, Nathan B.

Publication type:

Article

Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.95566

By:

Boocock, James;
Alexander, Noah;
Alamo Tapia, Leslie;
Walter-McNeill, Laura;
Patel, Shivani Prashant;
Munugala, Chetan;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Technical and Observational Challenges for Future Time-Domain Surveys.

Published in:

Proceedings of the International Astronomical Union, 2011, v. 7, n. S285, p. 165, doi. 10.1017/S1743921312000531

By:

Bloom, Joshua S.

Publication type:

Article

SN 2010jp (PTF10aaxi): A Jet-driven Type II Supernova.

Published in:

Proceedings of the International Astronomical Union, 2011, v. 7, n. S279, p. 159, doi. 10.1017/S1743921312012860

By:

Smith, Nathan;
Cenko, S. Bradley;
Butler, Nat;
Bloom, Joshua S.;
Kasliwal, Mansi M.;
Horesh, Assaf;
Kulkarni, Shrinivas R.;
Law, Nicholas M.;
Nugent, Peter E.;
Ofek, Eran O.;
Poznanski, Dovi;
Quimby, Robert M.;
Sesar, Branimir;
Ben-Ami, Sagi;
Arcavi, Iair;
Gal-Yam, Avishay;
Polishook, David;
Xu, Dong;
Yaron, Ofer;
Frail, Dale A.

Publication type:

Article

Bursting out all over.

Published in:

Nature, 1997, v. 387, n. 6636, p. 859, doi. 10.1038/43082

By:

Bloom, Joshua S.;
Ruderman, Malvin

Publication type:

Article

Genetic interactions contribute less than additive effects to quantitative trait variation in yeast.

Published in:

Nature Communications, 2015, v. 6, n. 11, p. 8712, doi. 10.1038/ncomms9712

By:

Bloom, Joshua S.;
Kotenko, Iulia;
Sadhu, Meru J.;
Treusch, Sebastian;
Albert, Frank W.;
Kruglyak, Leonid

Publication type:

Article

Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.

Published in:

Genome Biology, 2011, v. 12, n. 12, p. 1, doi. 10.1186/gb-2011-12-12-r122

By:

Khan, Zia;
Amini, Sasan;
Bloom, Joshua S.;
Ruse, Cristian;
Caudy, Amy A.;
Kruglyak, Leonid;
Singh, Mona;
Perlman, David H.;
Tavazoie, Saeed

Publication type:

Article

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 602, doi. 10.1038/msb.2012.34

By:

Khan, Zia;
Bloom, Joshua S;
Amini, Sasan;
Singh, Mona;
Perlman, David H;
Caudy, Amy A;
Kruglyak, Leonid

Publication type:

Article

Modeling epistasis in mice and yeast using the proportion of two or more distinct genetic backgrounds: Evidence for "polygenic epistasis".

Published in:

PLoS Genetics, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pgen.1009165

By:

Rau, Christoph D.;
Gonzales, Natalia M.;
Bloom, Joshua S.;
Park, Danny;
Ayroles, Julien;
Palmer, Abraham A.;
Lusis, Aldons J.;
Zaitlen, Noah

Publication type:

Article

Exploring the genetic architecture of protein secretion in Komagataella phaffii (Pichia pastoris) for biotechnology applications.

Published in:

PLoS Biology, 2022, v. 20, n. 12, p. 1, doi. 10.1371/journal.pbio.3001911

By:

Swichkow, Chantle Reiko;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Genome-wide base editor screen identifies regulators of protein abundance in yeast.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.79525

By:

Schubert, Olga T.;
Bloom, Joshua S.;
Sadhu, Meru J.;
Kruglyak, Leonid

Publication type:

Article

Reliable and accurate diagnostics from highly multiplexed sequencing assays.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-78942-7

By:

Booeshaghi, A. Sina;
Lubock, Nathan B.;
Cooper, Aaron R.;
Simpkins, Scott W.;
Bloom, Joshua S.;
Gehring, Jase;
Luebbert, Laura;
Kosuri, Sri;
Pachter, Lior

Publication type:

Article

Genetics of single-cell protein abundance variation in large yeast populations.

Published in:

Nature, 2014, v. 506, n. 7489, p. 494, doi. 10.1038/nature12904

By:

Albert, Frank W.;
Treusch, Sebastian;
Shockley, Arthur H.;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Finding the sources of missing heritability in a yeast cross.

Published in:

Nature, 2013, v. 494, n. 7436, p. 234, doi. 10.1038/nature11867

By:

Bloom, Joshua S.;
Ehrenreich, Ian M.;
Loo, Wesley T.;
Lite, Thúy-Lan Võ;
Kruglyak, Leonid

Publication type:

Article

Supernova SN 2011fe from an exploding carbon-oxygen white dwarf star.

Published in:

Nature, 2011, v. 480, n. 7377, p. 344, doi. 10.1038/nature10644

By:

Nugent, Peter E.;
Sullivan, Mark;
Cenko, S. Bradley;
Thomas, Rollin C.;
Kasen, Daniel;
Howell, D. Andrew;
Bersier, David;
Bloom, Joshua S.;
Kulkarni, S. R.;
Kandrashoff, Michael T.;
Filippenko, Alexei V.;
Silverman, Jeffrey M.;
Marcy, Geoffrey W.;
Howard, Andrew W.;
Isaacson, Howard T.;
Maguire, Kate;
Suzuki, Nao;
Tarlton, James E.;
Pan, Yen-Chen;
Bildsten, Lars

Publication type:

Article

Exclusion of a luminous red giant as a companion star to the progenitor of supernova SN 2011fe.

Published in:

Nature, 2011, v. 480, n. 7377, p. 348, doi. 10.1038/nature10646

By:

Li, Weidong;
Bloom, Joshua S.;
Podsiadlowski, Philipp;
Miller, Adam A.;
Cenko, S. Bradley;
Jha, Saurabh W.;
Sullivan, Mark;
Howell, D. Andrew;
Nugent, Peter E.;
Butler, Nathaniel R.;
Ofek, Eran O.;
Kasliwal, Mansi M.;
Richards, Joseph W.;
Stockton, Alan;
Shih, Hsin-Yi;
Bildsten, Lars;
Shara, Michael M.;
Bibby, Joanne;
Filippenko, Alexei V.;
Ganeshalingam, Mohan

Publication type:

Article

The Genetic Basis of Mutation Rate Variation in Yeast.

Published in:

Genetics, 2019, v. 211, n. 2, p. 731, doi. 10.1534/genetics.118.301609

By:

Liangke Gou;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.

Published in:

Genetics, 2018, v. 210, n. 4, p. 1509, doi. 10.1534/genetics.118.301311

By:

Tanny, Robyn E.;
Giuliani, Sarah E.;
Hippleheuser, Stephen W.;
Evans, Kathryn S.;
Brady, Shannon C.;
Cook, Daniel E.;
Andersen, Erik C.;
Bloom, Joshua S.;
Zamanian, Mostafa

Publication type:

Article

Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans.

Published in:

Genetics, 2015, v. 200, n. 4, p. 1327, doi. 10.1534/genetics.115.178491

By:

Ghosh, Rajarshi;
Bloom, Joshua S.;
Mohammadi, Aylia;
Schumer, Molly E.;
Andolfatto, Peter;
Ryu, William;
Kruglyak, Leonid

Publication type:

Article

Genetic variation in adaptability and pleiotropy in budding yeast.

Published in:

eLife, 2017, p. 1, doi. 10.7554/eLife.27167.001

By:

Jerison, Elizabeth R.;
Kryazhimskiy, Sergey;
Mitchell, James Kameron;
Bloom, Joshua S.;
Kruglyak, Leonid;
Desai, Michael M.

Publication type:

Article

Revealing ferroelectric switching character using deep recurrent neural networks.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12750-0

By:

Agar, Joshua C.;
Naul, Brett;
Pandya, Shishir;
van der Walt, Stefan;
Maher, Joshua;
Ren, Yao;
Chen, Long-Qing;
Kalinin, Sergei V.;
Vasudevan, Rama K.;
Cao, Ye;
Bloom, Joshua S.;
Martin, Lane W.

Publication type:

Article

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-221

By:

Bloom, Joshua S.;
Khan, Zia;
Kruglyak, Leonid;
Singh, Mona;
Caudy, Amy A.

Publication type:

Article

Works by Bloom, Joshua S

Analysis of the genetic basis of height in large Jewish nuclear families.

No supernovae associated with two long-duration γ-ray bursts.

Retrospective Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Symptomatic Patients Prior to Widespread Diagnostic Testing in Southern California.

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity.

Erratum: Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Genetic Mapping of MAPK-Mediated Complex Traits Across S. cerevisiae.

A Variant in the Neuropeptide Receptor <i>npr-1</i> is a Major Determinant of <i>Caenorhabditis elegans</i> Growth and Physiology.

Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.

Whole-organism eQTL mapping at cellular resolution with single-cell sequencing.

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.

High-resolution deep mutational scanning of the melanocortin-4 receptor enables target characterization for drug discovery.

Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction.

Technical and Observational Challenges for Future Time-Domain Surveys.

SN 2010jp (PTF10aaxi): A Jet-driven Type II Supernova.

Bursting out all over.

Genetic interactions contribute less than additive effects to quantitative trait variation in yeast.

Accurate proteome-wide protein quantification from high-resolution <sup>15</sup>N mass spectra.

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

Modeling epistasis in mice and yeast using the proportion of two or more distinct genetic backgrounds: Evidence for "polygenic epistasis".

Exploring the genetic architecture of protein secretion in Komagataella phaffii (Pichia pastoris) for biotechnology applications.

Genome-wide base editor screen identifies regulators of protein abundance in yeast.

Reliable and accurate diagnostics from highly multiplexed sequencing assays.

Genetics of single-cell protein abundance variation in large yeast populations.

Finding the sources of missing heritability in a yeast cross.

Supernova SN 2011fe from an exploding carbon-oxygen white dwarf star.

Exclusion of a luminous red giant as a companion star to the progenitor of supernova SN 2011fe.

The Genetic Basis of Mutation Rate Variation in Yeast.

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.

Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans.

Genetic variation in adaptability and pleiotropy in budding yeast.

Revealing ferroelectric switching character using deep recurrent neural networks.

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.