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Structural Determinants of the Rate of Protein Evolution in Yeast.
- Published in:
- Molecular Biology & Evolution, 2006, v. 23, n. 9, p. 1751, doi. 10.1093/molbev/msl040
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- Publication type:
- Article
Fitness effects of mutations to SARS-CoV-2 proteins.
- Published in:
- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead055
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- Publication type:
- Article
Association between SARS-CoV-2 and metagenomic content of samples from the Huanan Seafood Market.
- Published in:
- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead050
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- Publication type:
- Article
A biophysical model of viral escape from polyclonal antibodies.
- Published in:
- Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac110
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- Publication type:
- Article
Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.
- Published in:
- Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac052
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- Publication type:
- Article
antibody-escape estimator for mutations to the SARS-CoV-2 receptor-binding domain.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac021
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- Publication type:
- Article
Linking influenza virus evolution within and between human hosts.
- Published in:
- Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa010
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- Publication type:
- Article
Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence.
- Published in:
- Virus Evolution, 2018, v. 4, n. 2, p. 1, doi. 10.1093/ve/vey033
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- Publication type:
- Article
Evolution of antibody immunity following Omicron BA.1 breakthrough infection.
- Published in:
- Nature Communications, 2023, v. 14, p. 1, doi. 10.1038/s41467-023-38345-4
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- Publication type:
- Article
A(H1N1)pdm09 Influenza Viruses Replicating in Ferret Upper or Lower Respiratory Tract Differed in Onward Transmission Potential by Air.
- Published in:
- 2022
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- Publication type:
- journal article
Dynamics of Neutralizing Antibody Titers in the Months After Severe Acute Respiratory Syndrome Coronavirus 2 Infection.
- Published in:
- 2021
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- Publication type:
- Journal Article
Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA.
- Published in:
- PLoS Pathogens, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.ppat.1006288
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- Publication type:
- Article
Complete mapping of viral escape from neutralizing antibodies.
- Published in:
- PLoS Pathogens, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.ppat.1006271
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- Publication type:
- Article
Experimental Estimation of the Effects of All Amino-Acid Mutations to HIV’s Envelope Protein on Viral Replication in Cell Culture.
- Published in:
- PLoS Pathogens, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.ppat.1006114
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- Publication type:
- Article
Evolution of the SARS-CoV-2 Mutational Spectrum.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 4, p. 1, doi. 10.1093/molbev/msad085
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- Publication type:
- Article
Recovery of Deleted Deep Sequencing Data Sheds More Light on the Early Wuhan SARS-CoV-2 Epidemic.
- Published in:
- Molecular Biology & Evolution, 2021, v. 38, n. 12, p. 5211, doi. 10.1093/molbev/msab246
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- Publication type:
- Article
Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs.
- Published in:
- Molecular Biology & Evolution, 2015, v. 32, n. 11, p. 2944, doi. 10.1093/molbev/msv167
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- Publication type:
- Article
An Experimentally Informed Evolutionary Model Improves Phylogenetic Fit to Divergent Lactamase Homologs.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 10, p. 2753, doi. 10.1093/molbev/msu220
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- Publication type:
- Article
An Experimentally Determined Evolutionary Model Dramatically Improves Phylogenetic Fit.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 8, p. 1956, doi. 10.1093/molbev/msu173
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- Publication type:
- Article
Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection.
- Published in:
- Science Translational Medicine, 2021, v. 13, n. 600, p. 1, doi. 10.1126/scitranslmed.abi9915
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- Publication type:
- Article
Software for the analysis and visualization of deep mutational scanning data.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0590-4
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- Publication type:
- Article
Estimating the Fitness Advantage Conferred by Permissive Neuraminidase Mutations in Recent Oseltamivir-Resistant A(H1N1)pdm09 Influenza Viruses.
- Published in:
- PLoS Pathogens, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.ppat.1004065
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- Publication type:
- Article
Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones.
- Published in:
- PLoS Biology, 2018, v. 16, n. 9, p. 1, doi. 10.1371/journal.pbio.3000008
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- Publication type:
- Article
Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.68110
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- Publication type:
- Article
High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccination.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.64281
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- Publication type:
- Article
Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models.
- Published in:
- Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-016-0172-z
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- Publication type:
- Article
Epistatically Interacting Substitutions Are Enriched during Adaptive Protein Evolution.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004328
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- Publication type:
- Article
Extreme heterogeneity of influenza virus infection in single cells.
- Published in:
- eLife, 2018, p. 1, doi. 10.7554/eLife.32303
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- Publication type:
- Article
Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.13974
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- Publication type:
- Article
How single mutations affect viral escape from broad and narrow antibodies to H1 influenza hemagglutinin.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03665-3
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- Publication type:
- Article
Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 7, p. 667, doi. 10.1038/nbt.3907
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- Publication type:
- Article
Broad protection against influenza infection by vectored immunoprophylaxis in mice.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 7, p. 647, doi. 10.1038/nbt.2618
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- Publication type:
- Article
Corrigendum: A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments.
- Published in:
- 2007
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- Publication type:
- Correction notice
A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 9, p. 1051, doi. 10.1038/nbt1333
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- Publication type:
- Article
Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000349
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- Publication type:
- Article
Viral immunity: Basic mechanisms and therapeutic applications—a Keystone Symposia report.
- Published in:
- Annals of the New York Academy of Sciences, 2023, v. 1521, n. 1, p. 32, doi. 10.1111/nyas.14960
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- Publication type:
- Article
Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24435-8
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- Publication type:
- Article
Serological identification of SARS-CoV-2 infections among children visiting a hospital during the initial Seattle outbreak.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18178-1
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- Publication type:
- Article
A Computational-Experimental Approach Identifies Mutations That Enhance Surface Expression of an Oseltamivir-Resistant Influenza Neuraminidase.
- Published in:
- PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022201
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- Publication type:
- Article
Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution.
- Published in:
- Biology Direct, 2007, v. 2, p. 17, doi. 10.1186/1745-6150-2-17
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- Publication type:
- Article
The E2 glycoprotein holds key residues for Mayaro virus adaptation to the urban Aedes aegypti mosquito.
- Published in:
- PLoS Pathogens, 2023, v. 18, n. 4, p. 1, doi. 10.1371/journal.ppat.1010491
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- Publication type:
- Article
Deep mutational scans for ACE2 binding, RBD expression, and antibody escape in the SARS-CoV-2 Omicron BA.1 and BA.2 receptor-binding domains.
- Published in:
- PLoS Pathogens, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.ppat.1010951
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- Publication type:
- Article
Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments.
- Published in:
- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5578
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- Publication type:
- Article
A Nobel Prize for evolution.
- Published in:
- Evolution, 2019, v. 73, n. 3, p. 630, doi. 10.1111/evo.13697
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- Publication type:
- Article
The landscape of antibody binding affinity in SARS-CoV-2 Omicron BA.1 evolution.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.83442
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- Publication type:
- Article
Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: Response.
- Published in:
- BMC Evolutionary Biology, 2004, v. 4, p. 14, doi. 10.1186/1471-2148-4-14
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- Publication type:
- Article
Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
- Published in:
- BMC Evolutionary Biology, 2003, v. 3, p. 21, doi. 10.1186/1471-2148-3-21
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- Publication type:
- Article
The SARS-CoV-2 Delta variant induces an antibody response largely focused on class 1 and 2 antibody epitopes.
- Published in:
- PLoS Pathogens, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.ppat.1010592
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- Publication type:
- Article
A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchy.
- Published in:
- PLoS Pathogens, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.ppat.1010248
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- Publication type:
- Article
A human coronavirus evolves antigenically to escape antibody immunity.
- Published in:
- PLoS Pathogens, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.ppat.1009453
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- Publication type:
- Article