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Mouse Genome Database (MGD) 2019.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D801, doi. 10.1093/nar/gky1056
By:
- Bult, Carol J;
- Blake, Judith A;
- Smith, Cynthia L;
- Kadin, James A;
- Richardson, Joel E;
- Group, the Mouse Genome Database
Publication type:
Article
Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D836, doi. 10.1093/nar/gkx1006
By:
- Smith, Cynthia L;
- Blake, Judith A;
- Kadin, James A;
- Richardson, Joel E;
- Bult, Carol J;
- Group, the Mouse Genome Database
Publication type:
Article
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Blake, Judith A.;
- Bona, Jonathan;
- Chuming Chen;
- Sheng-Chih Chen;
- Christie, Karen R.;
- Cowart, Julie;
- D’Eustachio, Peter;
- Diehl, Alexander D.;
- Drabkin, Harold J.;
- Duncan, William D.;
- Huang, Hongzhan;
- Ren, Jia;
- Ross, Karen;
- Ruttenberg, Alan;
- Shamovsky, Veronica;
- Smith, Barry;
- Qinghua Wang;
- Jian Zhang
Publication type:
Article
Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D723, doi. 10.1093/nar/gkw1040
By:
- Blake, Judith A.;
- Eppig, Janan T.;
- Kadin, James A.;
- Richardson, Joel E.;
- Smith, Cynthia L.;
- Bult, Carol J.
Publication type:
Article
Mouse genome database 2016.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D840, doi. 10.1093/nar/gkv1211
By:
- Bult, Carol J.;
- Eppig, Janan T.;
- Blake, Judith A.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D726
By:
- Eppig, Janan T.;
- Blake, Judith A.;
- Bult, Carol J.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D810
By:
- Blake, Judith A.;
- Bult, Carol J.;
- Eppig, Janan T.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
Protein Ontology: a controlled structured network of protein entities.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Blake, Judith A.;
- Bult, Carol J.;
- Christie, Karen R.;
- Cowart, Julie;
- D’Eustachio, Peter;
- Diehl, Alexander D.;
- Drabkin, Harold J.;
- Helfer, Olivia;
- Huang, Hongzhan;
- Masci, Anna Maria;
- Ren, Jia;
- Roberts, Natalia V.;
- Ross, Karen;
- Ruttenberg, Alan;
- Shamovsky, Veronica;
- Smith, Barry;
- Yerramalla, Meher Shruti;
- Zhang, Jian
Publication type:
Article
The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human Disease.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D885, doi. 10.1093/nar/gks1115
By:
- Bult, Carol J.;
- Eppig, Janan T.;
- Blake, Judith A.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.
Published in:
Nucleic Acids Research, 2012, p. D881, doi. 10.1093/nar/gkr974
By:
- Eppig, Janan T.;
- Blake, Judith A.;
- Bult, Carol J.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
The Protein Ontology: a structured representation of protein forms and complexes.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Barker, Winona C.;
- Blake, Judith A.;
- Bult, Carol J.;
- Caudy, Michael;
- Drabkin, Harold J.;
- D’Eustachio, Peter;
- Evsikov, Alexei V.;
- Huang, Hongzhan;
- Nchoutmboube, Jules;
- Roberts, Natalia V.;
- Smith, Barry;
- Zhang, Jian;
- Wu, Cathy H.
Publication type:
Article
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D842
By:
- Blake, Judith A.;
- Bult, Carol J.;
- Kadin, James A.;
- Richardson, Joel E.;
- Eppig, Janan T.
Publication type:
Article
Towards BioDBcore: a community-defined information specification for biological databases.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D7, doi. 10.1093/nar/gkq1173
By:
- Gaudet, Pascale;
- Bairoch, Amos;
- Field, Dawn;
- Sansone, Susanna-Assunta;
- Taylor, Chris;
- Attwood, Teresa K.;
- Bateman, Alex;
- Blake, Judith A.;
- Bult, Carol J.;
- Cherry, J. Michael;
- Chisholm, Rex L.;
- Cochrane, Guy;
- Cook, Charles E.;
- Eppig, Janan T.;
- Galperin, Michael Y.;
- Gentleman, Robert;
- Goble, Carole A.;
- Gojobori, Takashi;
- Hancock, John M.;
- Howe, Douglas G.
Publication type:
Article
The Mouse Genome Database: enhancements and updates.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D586, doi. 10.1093/nar/gkp880
By:
- Bult, Carol J.;
- Kadin, James A.;
- Richardson, Joel E.;
- Blake, Judith A.;
- Eppig, Janan T.
Publication type:
Article
The Mouse Genome Database genotypes::phenotypes.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D712
By:
- Blake, Judith A.;
- Bult, Carol J.;
- Eppig, Janan T.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
The Mouse Genome Database (MGD): mouse biology and model systems.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D724
By:
- Bult, Carol J.;
- Eppig, Janan T.;
- Kadin, James A.;
- Richardson, Joel E.;
- Blake, Judith A.
Publication type:
Article
The mouse genome database (MGD): new features facilitating a model system.
Published in:
Nucleic Acids Research, 2007, v. 35, p. d630
By:
- Eppig, Janan T.;
- Blake, Judith A.;
- Bult, Carol J.;
- Kadin, James A.;
- Richardson, Joel E.
Publication type:
Article
Ontology engineering.
Published in:
2010
By:
- Alterovitz, Gil;
- Xiang, Michael;
- Hill, David P.;
- Lomax, Jane;
- Liu, Jonathan;
- Cherkassky, Michael;
- Dreyfuss, Jonathan;
- Mungall, Chris;
- Harris, Midori A.;
- Dolan, Mary E.;
- Blake, Judith A.;
- Ramoni, Marco F.
Publication type:
Letter
Bio-ontologies-fast and furious.
Published in:
Nature Biotechnology, 2004, v. 22, n. 6, p. 773, doi. 10.1038/nbt0604-773
By:
- Blake, Judith
Publication type:
Article
Gene Ontology: tool for the unification of biology.
Published in:
Nature Genetics, 2000, v. 25, n. 1, p. 25, doi. 10.1038/75556
By:
- Ashburner, Michael;
- Ball, Catherine A.;
- Blake, Judith A.;
- Botstein, David;
- Butler, Heather;
- Cherry, J. Michael;
- Davis, Allan P.;
- Dolinski, Kara;
- Dwight, Selina S.;
- Eppig, Janan T.;
- Harris, Midori A.;
- Hill, David P.;
- Issel-Tarver, Laurie;
- Kasarskis, Andrew;
- Lewis, Suzanna;
- Matese, John C.;
- Richardson, Joel E.;
- Ringwald, Martin;
- Rubin, Gerald M.
Publication type:
Article
Mouse Genome Database: From sequence to phenotypes and disease models.
Published in:
Genesis: The Journal of Genetics & Development, 2015, v. 53, n. 8, p. 458, doi. 10.1002/dvg.22874
By:
- Eppig, Janan T.;
- Richardson, Joel E.;
- Kadin, James A.;
- Smith, Cynthia L.;
- Blake, Judith A.;
- Bult, Carol J.
Publication type:
Article
Corralling conditional mutations: A unified resource for mouse phenotypes.
Published in:
Genesis: The Journal of Genetics & Development, 2002, v. 32, n. 2, p. 63, doi. 10.1002/gene.10055
By:
- Eppig, Janan T.;
- Blake, Judith A.;
- Burkart, Donna L.;
- Goldsmith, Carroll W.;
- Lutz, Cathleen M.;
- Smith, Cynthia L.
Publication type:
Article
Reactome and the Gene Ontology: digital convergence of data resources.
Published in:
Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325
By:
- Good, Benjamin M;
- Auken, Kimberly Van;
- Hill, David P;
- Mi, Huaiyu;
- Carbon, Seth;
- Balhoff, James P;
- Albou, Laurent-Philippe;
- Thomas, Paul D;
- Mungall, Christopher J;
- Blake, Judith A;
- D'Eustachio, Peter
Publication type:
Article
Pax3 transcripts in melanoblast development.
Published in:
Development, Growth & Differentiation, 2005, v. 47, n. 9, p. 627, doi. 10.1111/j.1440-169X.2005.00835.x
By:
- Blake, Judith A.;
- Ziman, Mel R.
Publication type:
Article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
By:
- Diehl, Alexander D.;
- Meehan, Terrence F.;
- Bradford, Yvonne M.;
- Brush, Matthew H.;
- Dahdul, Wasila M.;
- Dougall, David S.;
- Yongqun He;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Sarntivijai, Sirarat;
- Van Slyke, Ceri E.;
- Vasilevsky, Nicole A.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Mungall, Christopher J.
Publication type:
Article
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0066-0
By:
- Jingshan Huang;
- Eilbeck, Karen;
- Smith, Barry;
- Blake, Judith A.;
- Dejing Dou;
- Weili Huang;
- Natale, Darren A.;
- Ruttenberg, Alan;
- Jun Huan;
- Zimmermann, Michael T.;
- Guoqian Jiang;
- Yu Lin;
- Bin Wu;
- Strachan, Harrison J.;
- Yongqun He;
- Shaojie Zhang;
- Xiaowei Wang;
- Zixing Liu;
- Borchert, Glen M.;
- Ming Tan
Publication type:
Article
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0064-2
By:
- Jingshan Huang;
- Gutierrez, Fernando;
- Strachan, Harrison J.;
- Dejing Dou;
- Weili Huang;
- Smith, Barry;
- Blake, Judith A.;
- Eilbeck, Karen;
- Natale, Darren A.;
- Yu Lin;
- Bin Wu;
- de Silva, Nisansa;
- Xiaowei Wang;
- Zixing Liu;
- Borchert, Glen M.;
- Ming Tan;
- Ruttenberg, Alan
Publication type:
Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
By:
- Haendel, Melissa A.;
- Balhoff, James P.;
- Bastian, Frederic B.;
- Blackburn, David C.;
- Blake, Judith A.;
- Bradford, Yvonne;
- Comte, Aurelie;
- Dahdul, Wasila M.;
- Dececchi, Thomas A.;
- Druzinsky, Robert E.;
- Hayamizu, Terry F.;
- Ibrahim, Nizar;
- Lewis, Suzanna E.;
- Mabee, Paula M.;
- Niknejad, Anne;
- Robinson-Rechavi, Marc;
- Sereno, Paul C.;
- Mungall, Christopher J.
Publication type:
Article
OMIT: Dynamic, Semi-Automated Ontology Development for the microRNA Domain.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0100855
By:
- Huang, Jingshan;
- Dang, Jiangbo;
- Borchert, Glen M.;
- Eilbeck, Karen;
- Zhang, He;
- Xiong, Min;
- Jiang, Weijian;
- Wu, Hao;
- Blake, Judith A.;
- Natale, Darren A.;
- Tan, Ming
Publication type:
Article
Representing Kidney Development Using the Gene Ontology.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099864
By:
- Alam-Faruque, Yasmin;
- Hill, David P.;
- Dimmer, Emily C.;
- Harris, Midori A.;
- Foulger, Rebecca E.;
- Tweedie, Susan;
- Attrill, Helen;
- Howe, Douglas G.;
- Thomas, Stephen Randall;
- Davidson, Duncan;
- Woolf, Adrian S.;
- Blake, Judith A.;
- Mungall, Christopher J.;
- O’Donovan, Claire;
- Apweiler, Rolf;
- Huntley, Rachael P.
Publication type:
Article
The Characterisation of Pax3 Expressant Cells in Adult Peripheral Nerve.
Published in:
PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059184
By:
- Blake, Judith A.;
- Ziman, Melanie R.
Publication type:
Article
Number of Siblings and Sociability.
Published in:
Journal of Marriage & Family, 1991, v. 53, n. 2, p. 271, doi. 10.2307/352898
By:
- Blake, Judith;
- Richardson, Barbra;
- Bhattacharya, Jennifer
Publication type:
Article
Is Zero Preferred? American Attitudes Toward Childlessness in the 1970s.
Published in:
Journal of Marriage & Family, 1979, v. 41, n. 2, p. 245, doi. 10.2307/351694
By:
- Blake, Judith
Publication type:
Article
Number to Siblings and Personality.
Published in:
Family Planning Perspectives, 1991, v. 23, n. 6, p. 272, doi. 10.2307/2135778
By:
- Blake, Judith
Publication type:
Article
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa043
By:
- Jiang, Xiangying;
- Ringwald, Martin;
- Blake, Judith;
- Shatkay, Haggit
Publication type:
Article
Integrating image caption information into biomedical document classification in support of biocuration.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa024
By:
- Jiang, Xiangying;
- Li, Pengyuan;
- Kadin, James;
- Blake, Judith A;
- Ringwald, Martin;
- Shatkay, Hagit
Publication type:
Article
An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz045
By:
- Jiang, Xiangying;
- Ringwald, Martin;
- Blake, Judith A;
- Arighi, Cecilia;
- Zhang, Gongbo;
- Shatkay, Hagit
Publication type:
Article
Curating gene sets: challenges and opportunities for integrative analysis.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz036
By:
- Bubier, Jason;
- Hill, David;
- Mukherjee, Gaurab;
- Reynolds, Timothy;
- Baker, Erich J;
- Berger, Alexander;
- Emerson, Jake;
- Blake, Judith A;
- Chesler, Elissa J
Publication type:
Article
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax017
By:
- Xiangying Jiang;
- Ringwald, Martin;
- Blake, Judith;
- Shatkay, Hagit
Publication type:
Article
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw088
By:
- Tripathi, Sushil;
- Vercruysse, Steven;
- Chawla, Konika;
- Christie, Karen R.;
- Blake, Judith A.;
- Huntley, Rachael P.;
- Orchard, Sandra;
- Hermjakob, Henning;
- Thommesen, Liv;
- Lægreid, Astrid;
- Kuiper, Martin
Publication type:
Article
Modeling biochemical pathways in the gene ontology.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw126
By:
- Hill, David P.;
- D'Eustachio, Peter;
- Berardini, Tanya Z.;
- Mungall, Christopher J.;
- Renedo, Nikolai;
- Blake, Judith A.
Publication type:
Article
Standardized description of scientific evidence using the Evidence Ontology (ECO).
Published in:
Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau075
By:
- Chibucos, Marcus C.;
- Mungall, Christopher J.;
- Balakrishnan, Rama;
- Christie, Karen R.;
- Huntley, Rachael P.;
- White, Owen;
- Blake, Judith A.;
- Lewis, Suzanna E.;
- Giglio, Michelle
Publication type:
Article
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat062
By:
- Tripathi, Sushil;
- Christie, Karen R.;
- Balakrishnan, Rama;
- Huntley, Rachael;
- Hill, David P.;
- Thommesen, Liv;
- Blake, Judith A.;
- Kuiper, Martin;
- Lægreid, Astrid
Publication type:
Article
Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas045
By:
- Drabkin, Harold J.;
- Blake, Judith A.
Publication type:
Article
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Published in:
2012
By:
- Gaudet, Pascale;
- Arighi, Cecilia;
- Bastian, Frederic;
- Bateman, Alex;
- Blake, Judith A.;
- Cherry, Michael J.;
- D’Eustachio, Peter;
- Finn, Robert;
- Giglio, Michelle;
- Hirschman, Lynette;
- Kania, Renate;
- Klimke, William;
- Martin, Maria Jesus;
- Karsch-Mizrachi, Ilene;
- Munoz-Torres, Monica;
- Natale, Darren;
- O’Donovan, Claire;
- Ouellette, Francis;
- Pruitt, Kim D.;
- Robinson-Rechavi, Marc
Publication type:
Proceeding
Disease model curation improvements at Mouse Genome Informatics.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar063
By:
- Bello, Susan M.;
- Richardson, Joel E.;
- Davis, Allan P.;
- Wiegers, Thomas C.;
- Mattingly, Carolyn J.;
- Dolan, Mary E.;
- Smith, Cynthia L.;
- Blake, Judith A.;
- Eppig, Janan T.
Publication type:
Article
Towards BioDBcore: a community-defined information specification for biological databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, n. 0, p. 1
By:
- Gaudet, Pascale;
- Bairoch, Amos;
- Field, Dawn;
- Sansone, Susanna-Assunta;
- Taylor, Chris;
- Attwood, Teresa K.;
- Bateman, Alex;
- Blake, Judith A.;
- Bult, Carol J.;
- Cherry, J. Michael;
- Chisholm, Rex L.;
- Cochrane, Guy;
- Cook, Charles E.;
- Eppig, Janan T.;
- Galperin, Michael Y.;
- Gentleman, Robert;
- Goble, Carole A.;
- Gojobori, Takashi;
- Hancock, John M.;
- Howe, Douglas G.
Publication type:
Article
Methodology for the inference of gene function from phenotype data.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 537, doi. 10.1186/s12859-014-0405-z
By:
- Ascensao, Joao A.;
- Dolan, Mary E.;
- Hill, David P.;
- Blake, Judith A.
Publication type:
Article
A method for increasing expressivity of Gene Ontology annotations using a compositional approach.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-155
By:
- Huntley, Rachael P.;
- Harris, Midori A.;
- Alam-Faruque, Yasmin;
- Blake, Judith A.;
- Carbon, Seth;
- Dietze, Heiko;
- Dimmer, Emily C.;
- Foulger, Rebecca E.;
- Hil, David P.;
- Khodiyar, Varsha K.;
- Lock, Antonia;
- Lomax, Jane;
- Lovering, Ruth C.;
- Mutowo-Meullenet, Prudence;
- Sawford, Tony;
- Auken, Kimberly Van;
- Wood, Valerie;
- Mungall, Christopher J.
Publication type:
Article
DFLAT: functional annotation for human development.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-45
By:
- Wick, Heather C.;
- Drabkin, Harold;
- Ngu, Huy;
- Sackman, Michael;
- Fournier, Craig;
- Haggett, Jessica;
- Blake, Judith A.;
- Bianchi, Diana W.;
- Slonim, Donna K.
Publication type:
Article

Found: 101