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Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbae001
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- Publication type:
- Article
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D368, doi. 10.1093/nar/gkad1011
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- Publication type:
- Article
Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.
- Published in:
- Nature Biotechnology, 2023, v. 41, n. 7, p. 1018, doi. 10.1038/s41587-022-01580-z
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- Publication type:
- Article
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation.
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- PLoS Genetics, 2023, v. 18, n. 2, p. 1, doi. 10.1371/journal.pgen.1010587
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- Article
Using Nanocompore to Identify RNA Modifications from Direct RNA Nanopore Sequencing Data.
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- Current Protocols, 2023, v. 3, n. 2, p. 1, doi. 10.1002/cpz1.683
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- Article
From genetic variation to precision medicine.
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- Cambridge Prisms: Precision Medicine, 2023, v. 1, p. 1, doi. 10.1017/pcm.2022.11
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- Publication type:
- Article
The contribution of common regulatory and protein-coding TYR variants to the genetic architecture of albinism.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31392-3
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- Publication type:
- Article
The contribution of common regulatory and protein-coding TYR variants to the genetic architecture of albinism.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31392-3
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- Publication type:
- Article
European Bioinformatics Institute (EMBL-EBI) in 2021.
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- Nucleic Acids Research, 2022, v. 50, n. D1, p. D11, doi. 10.1093/nar/gkab1127
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- Publication type:
- Article
RNA modifications detection by comparative Nanopore direct RNA sequencing.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27393-3
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- Article
International Human Genome Project.
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- Human Molecular Genetics, 2021, v. 30, n. 20, p. R161, doi. 10.1093/hmg/ddab198
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- Article
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D29, doi. 10.1093/nar/gkaa1077
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- Publication type:
- Article
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D17, doi. 10.1093/nar/gkz1033
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- Article
The European Bioinformatics Institute in 2018: tools, infrastructure and training.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D15, doi. 10.1093/nar/gky1124
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- Article
htsget: a protocol for securely streaming genomic data.
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- Bioinformatics, 2019, v. 35, n. 1, p. 119, doi. 10.1093/bioinformatics/bty492
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- Publication type:
- Article
PhenotypeSimulator: A comprehensive framework for simulating multi-trait, multi-locus genotype to phenotype relationships.
- Published in:
- Bioinformatics, 2018, v. 34, n. 17, p. 2951, doi. 10.1093/bioinformatics/bty197
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- Publication type:
- Article
ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.
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- PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006002
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- Article
The European Bioinformatics Institute in 2017: data coordination and integration.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D21, doi. 10.1093/nar/gkx1154
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- Publication type:
- Article
The Human Cell Atlas.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.27041
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- Article
The Mighty Fruit Fly Moves into Outbred Genetics.
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- PLoS Genetics, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pgen.1006388
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- Article
Epigenome-wide Association Studies and the Interpretation of Disease -Omics.
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- PLoS Genetics, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pgen.1006105
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- Publication type:
- Article
The European Bioinformatics Institute in 2016: Data growth and integration.
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- Nucleic Acids Research, 2016, v. 44, p. D20, doi. 10.1093/nar/gkv1352
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- Publication type:
- Article
Ensembl regulation resources.
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- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/bav119
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- Article
Progress in Medicine: Experts Take Stock.
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- 2015
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- Publication type:
- editorial
Human genomics: The end of the start for population sequencing.
- Published in:
- Nature, 2015, v. 526, n. 7571, p. 52, doi. 10.1038/526052a
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- Publication type:
- Article
Using human genetics to make new medicines.
- Published in:
- 2015
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- Publication type:
- journal article
Correction: Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association.
- Published in:
- 2015
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- Publication type:
- Correction Notice
Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.pgen.1004798
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- Publication type:
- Article
The EBI RDF platform: linked open data for the life sciences.
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- Bioinformatics, 2014, v. 30, n. 9, p. 1338, doi. 10.1093/bioinformatics/btt765
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- Publication type:
- Article
Integrative knowledge management to enhance pharmaceutical R&D.
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- Nature Reviews Drug Discovery, 2014, v. 13, n. 4, p. 239, doi. 10.1038/nrd4290
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- Article
Archaic humans: Four makes a party.
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- Nature, 2014, v. 505, n. 7481, p. 32, doi. 10.1038/nature12847
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- Publication type:
- Article
The European Bioinformatics Institute’s data resources 2014.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D18, doi. 10.1093/nar/gkt1206
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- Publication type:
- Article
The Reactome pathway knowledgebase.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D472, doi. 10.1093/nar/gkt1102
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- Publication type:
- Article
Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development.
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- Nucleic Acids Research, 2013, v. 41, n. 6, p. 3600, doi. 10.1093/nar/gkt030
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- Publication type:
- Article
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
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- Nature, 2013, v. 494, n. 7435, p. 77, doi. 10.1038/nature11875
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- Publication type:
- Article
Integrative annotation of chromatin elements from ENCODE data.
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- Nucleic Acids Research, 2013, v. 41, n. 2, p. 827, doi. 10.1093/nar/gks1284
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- Publication type:
- Article
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
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- Nucleic Acids Research, 2013, v. 41, p. D171, doi. 10.1093/nar/gks1221
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- Publication type:
- Article
The making of ENCODE: Lessons for big-data projects.
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- Nature, 2012, v. 489, n. 7414, p. 49, doi. 10.1038/489049a
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- Article
Analysis of variation at transcription factor binding sites in Drosophila and humans.
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- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r49
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- Publication type:
- Article
Modeling gene expression using chromatin features in various cellular contexts.
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- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r53
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- Publication type:
- Article
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors.
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- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r48
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- Publication type:
- Article
Paralogous annotation of disease-causing variants in long QT syndrome genes.
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- Human Mutation, 2012, v. 33, n. 8, p. 1188, doi. 10.1002/humu.22114
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- Publication type:
- Article
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.
- Published in:
- Bioinformatics, 2012, v. 28, n. 8, p. 1086, doi. 10.1093/bioinformatics/bts094
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- Publication type:
- Article
The genomic basis of adaptive evolution in threespine sticklebacks.
- Published in:
- Nature, 2012, v. 484, n. 7392, p. 55, doi. 10.1038/nature10944
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- Article
Major submissions tool developments at the European nucleotide archive.
- Published in:
- Nucleic Acids Research, 2012, p. D43, doi. 10.1093/nar/gkr946
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- Article
Considerations for the inclusion of 2x mammalian genomes in phylogenetic analyses.
- Published in:
- Genome Biology, 2011, v. 12, n. 2, p. 1, doi. 10.1186/gb-2011-12-2-401
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- Publication type:
- Article
The European Nucleotide Archive.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D28, doi. 10.1093/nar/gkq967
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- Publication type:
- Article
Reactome: a database of reactions, pathways and biological processes.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D691, doi. 10.1093/nar/gkq1018
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- Publication type:
- Article
Assemblies: the good, the bad, the ugly.
- Published in:
- 2011
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- Publication type:
- Opinion
Sense from sequence reads: methods for alignment and assembly.
- Published in:
- 2010
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- Correction notice