OpenURL Connection Search

Select item for more details and to access through your institution.

Dysfunctional ERG signaling drives pulmonary vascular aging and persistent fibrosis.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31890-4
By:
- Caporarello, Nunzia;
- Lee, Jisu;
- Pham, Tho X.;
- Jones, Dakota L.;
- Guan, Jiazhen;
- Link, Patrick A.;
- Meridew, Jeffrey A.;
- Marden, Grace;
- Yamashita, Takashi;
- Osborne, Collin A.;
- Bhagwate, Aditya V.;
- Huang, Steven K.;
- Nicosia, Roberto F.;
- Tschumperlin, Daniel J.;
- Trojanowska, Maria;
- Ligresti, Giovanni
Publication type:
Article
Author Correction: Dysfunctional ERG signaling drives pulmonary vascular aging and persistent fibrosis.
Published in:
2022
By:
- Caporarello, Nunzia;
- Lee, Jisu;
- Pham, Tho X.;
- Jones, Dakota L.;
- Guan, Jiazhen;
- Link, Patrick A.;
- Meridew, Jeffrey A.;
- Marden, Grace;
- Yamashita, Takashi;
- Osborne, Collin A.;
- Bhagwate, Aditya V.;
- Huang, Steven K.;
- Nicosia, Roberto F.;
- Tschumperlin, Daniel J.;
- Trojanowska, Maria;
- Ligresti, Giovanni
Publication type:
Correction Notice
In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32576-7
By:
- Nicolas, Clara T.;
- VanLith, Caitlin J.;
- Hickey, Raymond D.;
- Du, Zeji;
- Hillin, Lori G.;
- Guthman, Rebekah M.;
- Cao, William J.;
- Haugo, Benjamin;
- Lillegard, Annika;
- Roy, Diya;
- Bhagwate, Aditya;
- O'Brien, Daniel;
- Kocher, Jean-Pierre;
- Kaiser, Robert A.;
- Russell, Stephen J.;
- Lillegard, Joseph B.
Publication type:
Article
Dysfunctional ERG signaling drives pulmonary vascular aging and persistent fibrosis.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31890-4
By:
- Caporarello, Nunzia;
- Lee, Jisu;
- Pham, Tho X.;
- Jones, Dakota L.;
- Guan, Jiazhen;
- Link, Patrick A.;
- Meridew, Jeffrey A.;
- Marden, Grace;
- Yamashita, Takashi;
- Osborne, Collin A.;
- Bhagwate, Aditya V.;
- Huang, Steven K.;
- Nicosia, Roberto F.;
- Tschumperlin, Daniel J.;
- Trojanowska, Maria;
- Ligresti, Giovanni
Publication type:
Article
Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease.
Published in:
NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae098
By:
- Liu, Yuanhang;
- Vierkant, Robert A;
- Bhagwate, Aditya;
- Jons, William A;
- Stallings-Mann, Melody L;
- McCauley, Bryan M;
- Carter, Jodi M;
- Stephens, Melissa T;
- Pfrender, Michael E;
- Littlepage, Laurie E;
- Radisky, Derek C;
- Cunningham, Julie M;
- Degnim, Amy C;
- Winham, Stacey J;
- Wang, Chen
Publication type:
Article
Genomewide epigenetic study shows significant DNA hypermethylation in chronic rhinosinusitis versus control ethmoidal tissue.
Published in:
International Forum of Allergy & Rhinology, 2023, v. 13, n. 12, p. 2235, doi. 10.1002/alr.23205
By:
- Brar, Tripti;
- Baheti, Saurabh;
- Bhagwate, Aditya Vijay;
- Kita, Hirohito;
- Marino, Michael J.;
- Lal, Devyani
Publication type:
Article
Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors.
Published in:
PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0081925
By:
- Norton, Nadine;
- Sun, Zhifu;
- Asmann, Yan W.;
- Serie, Daniel J.;
- Necela, Brian M.;
- Bhagwate, Aditya;
- Jen, Jin;
- Eckloff, Bruce W.;
- Kalari, Krishna R.;
- Thompson, Kevin J.;
- Carr, Jennifer M.;
- Kachergus, Jennifer M.;
- Geiger, Xochiquetzal J.;
- Perez, Edith A.;
- Thompson, E. Aubrey
Publication type:
Article
Impact of Library Preparation on Downstream Analysis and Interpretation of RNA-Seq Data: Comparison between Illumina PolyA and NuGEN Ovation Protocol.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071745
By:
- Sun, Zhifu;
- Asmann, Yan W.;
- Nair, Asha;
- Zhang, Yuji;
- Wang, Liguo;
- Kalari, Krishna R.;
- Bhagwate, Aditya V.;
- Baker, Tiffany R.;
- Carr, Jennifer M.;
- Kocher, Jean-Pierre A.;
- Perez, Edith A.;
- Thompson, E. Aubrey
Publication type:
Article
Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
Published in:
BMC Medical Genomics, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s12920-022-01355-0
By:
- Liu, Yuanhang;
- Bhagwate, Aditya;
- Winham, Stacey J.;
- Stephens, Melissa T.;
- Harker, Brent W.;
- McDonough, Samantha J.;
- Stallings-Mann, Melody L.;
- Heinzen, Ethan P.;
- Vierkant, Robert A.;
- Hoskin, Tanya L.;
- Frost, Marlene H.;
- Carter, Jodi M.;
- Pfrender, Michael E.;
- Littlepage, Laurie;
- Radisky, Derek C.;
- Cunningham, Julie M.;
- Degnim, Amy C.;
- Wang, Chen
Publication type:
Article
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-280
By:
- Huihuang Yan;
- Evans, Jared;
- Kalmbach, Mike;
- Moore, Raymond;
- Middha, Sumit;
- Luban, Stanislav;
- Liguo Wang;
- Bhagwate, Aditya;
- Ying Li;
- Zhifu Sun;
- Xianfeng Chen;
- Kocher, Jean-Pierre A.
Publication type:
Article
High frequency electrical stimulation promotes expression of extracellular matrix proteins from human astrocytes.
Published in:
Molecular Biology Reports, 2019, v. 46, n. 4, p. 4369, doi. 10.1007/s11033-019-04890-9
By:
- Jang, Jin Sung;
- Choi, Chan-Il;
- Yi, Jiwon;
- Butters, Kim;
- Kim, Inyong;
- Bhagwate, Aditya;
- Jen, Jin;
- Chang, Su-youne
Publication type:
Article
Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine.
Published in:
BMC Medical Genomics, 2018, v. 11, n. 3, p. N.PAG, doi. 10.1186/s12920-018-0391-5
By:
- Prodduturi, Naresh;
- Bhagwate, Aditya;
- Kocher, Jean-Pierre A.;
- Sun, Zhifu
Publication type:
Article
Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
Published in:
Briefings in Bioinformatics, 2017, v. 18, n. 6, p. 973, doi. 10.1093/bib/bbw069
By:
- Zhifu Sun;
- Bhagwate, Aditya;
- Prodduturi, Naresh;
- Ping Yang;
- Kocher, Jean-Pierre A.
Publication type:
Article
An investigation of plasma cell-free RNA for the detection of colorectal cancer: From transcriptome marker selection to targeted validation.
Published in:
PLoS ONE, 2024, v. 19, n. 8, p. 1, doi. 10.1371/journal.pone.0308711
By:
- Northrop-Albrecht, Emmalee J.;
- Wu, Chung Wah;
- Berger, Calise K.;
- Taylor, William R.;
- Foote, Patrick H.;
- Doering, Karen A.;
- Gonser, Anna M.;
- Bhagwate, Aditya;
- Sun, Zhifu;
- Mahoney, Douglas W.;
- Burger, Kelli N.;
- Boardman, Lisa A.;
- Kisiel, John B.
Publication type:
Article
Obesity-driven mitochondrial dysfunction in human adipose tissue-derived mesenchymal stem/stromal cells involves epigenetic changes.
Published in:
Cell Death & Disease, 2024, v. 15, n. 6, p. 1, doi. 10.1038/s41419-024-06774-8
By:
- Eirin, Alfonso;
- Thaler, Roman;
- Glasstetter, Logan M.;
- Xing, Li;
- Zhu, Xiang-Yang;
- Osborne, Andrew C.;
- Mondesir, Ronscardy;
- Bhagwate, Aditya V.;
- Lerman, Amir;
- van Wijnen, Andre J.;
- Lerman, Lilach O.
Publication type:
Article
Somatic mutations in benign breast disease tissues and association with breast cancer risk.
Published in:
BMC Medical Genomics, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s12920-021-01032-8
By:
- Winham, Stacey J.;
- Wang, Chen;
- Heinzen, Ethan P.;
- Bhagwate, Aditya;
- Liu, Yuanhang;
- McDonough, Samantha J.;
- Stallings-Mann, Melody L.;
- Frost, Marlene H.;
- Vierkant, Robert A.;
- Denison, Lori A.;
- Carter, Jodi M.;
- Sherman, Mark E.;
- Radisky, Derek C.;
- Degnim, Amy C.;
- Cunningham, Julie M.
Publication type:
Article
Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6056-8
By:
- Bhagwate, Aditya Vijay;
- Liu, Yuanhang;
- Winham, Stacey J.;
- McDonough, Samantha J.;
- Stallings-Mann, Melody L.;
- Heinzen, Ethan P.;
- Davila, Jaime I.;
- Vierkant, Robert A.;
- Hoskin, Tanya L.;
- Frost, Marlene;
- Carter, Jodi M.;
- Radisky, Derek C.;
- Cunningham, Julie M.;
- Degnim, Amy C.;
- Wang, Chen
Publication type:
Article
Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods.
Published in:
PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0211400
By:
- McDonough, Samantha J.;
- Bhagwate, Aditya;
- Sun, Zhifu;
- Wang, Chen;
- Zschunke, Michael;
- Gorman, Joshua A.;
- Kopp, Karla J.;
- Cunningham, Julie M.
Publication type:
Article
Identification of factors associated with duplicate rate in ChIP-seq data.
Published in:
PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0214723
By:
- Tian, Shulan;
- Peng, Shuxia;
- Kalmbach, Michael;
- Gaonkar, Krutika S.;
- Bhagwate, Aditya;
- Ding, Wei;
- Eckel-Passow, Jeanette;
- Yan, Huihuang;
- Slager, Susan L.
Publication type:
Article
CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-423
By:
- Zhifu Sun;
- Evans, Jared;
- Bhagwate, Aditya;
- Middha, Sumit;
- Bockol, Matthew;
- Huihuang Yan;
- Kocher, Jean-Pierre
Publication type:
Article
RVboost: RNA-seq variants prioritization using a boosting method.
Published in:
Bioinformatics, 2014, v. 30, n. 23, p. 3414, doi. 10.1093/bioinformatics/btu577
By:
- Wang, Chen;
- Davila, Jaime I.;
- Baheti, Saurabh;
- Bhagwate, Aditya V.;
- Wang, Xue;
- Kocher, Jean-Pierre A.;
- Slager, Susan L.;
- Feldman, Andrew L.;
- Novak, Anne J.;
- Cerhan, James R.;
- Thompson, E. Aubrey;
- Asmann, Yan W.
Publication type:
Article
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Published in:
Bioinformatics, 2014, v. 30, n. 18, p. 2678, doi. 10.1093/bioinformatics/btu363
By:
- Wang, Chen;
- Evans, Jared M.;
- Bhagwate, Aditya V.;
- Prodduturi, Naresh;
- Sarangi, Vivekananda;
- Middha, Mridu;
- Sicotte, Hugues;
- Vedell, Peter T.;
- Hart, Steven N.;
- Oliver, Gavin R.;
- Kocher, Jean-Pierre A.;
- Maurer, Matthew J.;
- Novak, Anne J.;
- Slager, Susan L.;
- Cerhan, James R.;
- Asmann, Yan W.
Publication type:
Article

Found: 22