Works by Bertin, Nicolas

Results: 29

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.

Published in:

Nature Genetics, 2014, v. 46, n. 6, p. 558, doi. 10.1038/ng.2965

By:

Fort, Alexandre;
Hashimoto, Kosuke;
Yamada, Daisuke;
Salimullah, Md;
Keya, Chaman A;
Saxena, Alka;
Bonetti, Alessandro;
Voineagu, Irina;
Bertin, Nicolas;
Kratz, Anton;
Noro, Yukihiko;
Wong, Chee-Hong;
de Hoon, Michiel;
Andersson, Robin;
Sandelin, Albin;
Suzuki, Harukazu;
Wei, Chia-Lin;
Koseki, Haruhiko;
Hasegawa, Yuki;
Forrest, Alistair R R

Publication type:

Article

Network modeling links breast cancer susceptibility and centrosome dysfunction.

Published in:

Nature Genetics, 2007, v. 39, n. 11, p. 1338, doi. 10.1038/ng.2007.2

By:

Pujana, Miguel Angel;
Han, Jing-Dong J.;
Starita, Lea M.;
Stevens, Kristen N.;
Tewari, Muneesh;
Jin Sook Ahn;
Rennert, Gad;
Moreno, Víctor;
Kirchhoff, Tomas;
Gold, Bert;
Assmann, Volker;
ElShamy, Wael M.;
Rual, Jean-François;
Levine, Douglas;
Rozek, Laura S.;
Gelman, Rebecca S.;
Gunsalus, Kristin C.;
Greenberg, Roger A.;
Sobhian, Bijan;
Bertin, Nicolas

Publication type:

Article

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Published in:

Nature Genetics, 2003, v. 34, n. 1, p. 35, doi. 10.1038/ng1140

By:

Reboul, Jerome;
Vaglio, Philippe;
Rual, Jean-Francois;
Lamesch, Philippe;
Martinez, Monica;
Armstrong, Christopher M.;
Li, Siming;
Jacotot, Laurent;
Bertin, Nicolas;
Janky, Rekin's;
Moore, Troy;
Hudson, James R.;
Hartley, James L.;
Brasch, Michael A.;
Vandenhaute, Jean;
Boulton, Simon;
Endress, Gregory A.;
Jenna, Sarah;
Chevet, Eric

Publication type:

Article

Learning dislocation dynamics mobility laws from large-scale MD simulations.

Published in:

NPJ Computational Materials, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41524-024-01378-4

By:

Bertin, Nicolas;
Bulatov, Vasily V.;
Zhou, Fei

Publication type:

Article

Score-based denoising for atomic structure identification.

Published in:

NPJ Computational Materials, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41524-024-01337-z

By:

Hsu, Tim;
Sadigh, Babak;
Bertin, Nicolas;
Park, Cheol Woo;
Chapman, James;
Bulatov, Vasily;
Zhou, Fei

Publication type:

Article

Analysis of clinically relevant variants from ancestrally diverse Asian genomes.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34116-9

By:

Chan, Sock Hoai;
Bylstra, Yasmin;
Teo, Jing Xian;
Kuan, Jyn Ling;
Bertin, Nicolas;
Gonzalez-Porta, Mar;
Hebrard, Maxime;
Tirado-Magallanes, Roberto;
Tan, Joanna Hui Juan;
Jeyakani, Justin;
Li, Zhihui;
Chai, Jin Fang;
Chong, Yap Seng;
Davila, Sonia;
Goh, Liuh Ling;
Lee, Eng Sing;
Wong, Eleanor;
Wong, Tien Yin;
SG10K_Health Consortium;
Aung, Tin

Publication type:

Article

Correction to: Family history assessment significantly enhances delivery of precision medicine in the genomics era.

Published in:

2021

By:

Bylstra, Yasmin;
Lim, Weng Khong;
Kam, Sylvia;
Tham, Koei Wan;
Wu, R. Ryanne;
Teo, Jing Xian;
Davila, Sonia;
Kuan, Jyn Ling;
Chan, Sock Hoai;
Bertin, Nicolas;
Yang, Cheng Xi;
Rozen, Steve;
Teh, Bin Tean;
Yeo, Khung Keong;
Cook, Stuart Alexander;
Jamuar, Saumya Shekhar;
Ginsburg, Geoffrey S.;
Orlando, Lori A.;
Tan, Patrick

Publication type:

Correction Notice

Family history assessment significantly enhances delivery of precision medicine in the genomics era.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-020-00819-1

By:

Bylstra, Yasmin;
Lim, Weng Khong;
Kam, Sylvia;
Tham, Koei Wan;
Wu, R. Ryanne;
Teo, Jing Xian;
Davila, Sonia;
Kuan, Jyn Ling;
Chan, Sock Hoai;
Bertin, Nicolas;
Yang, Cheng Xi;
Rozen, Steve;
Teh, Bin Tean;
Yeo, Khung Keong;
Cook, Stuart Alexander;
Jamuar, Saumya Shekhar;
Ginsburg, Geoffrey S.;
Orlando, Lori A.;
Tan, Patrick

Publication type:

Article

Family history assessment significantly enhances delivery of precision medicine in the genomics era.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-020-00819-1

By:

Bylstra, Yasmin;
Lim, Weng Khong;
Kam, Sylvia;
Tham, Koei Wan;
Wu, R. Ryanne;
Teo, Jing Xian;
Davila, Sonia;
Kuan, Jyn Ling;
Chan, Sock Hoai;
Bertin, Nicolas;
Yang, Cheng Xi;
Rozen, Steve;
Teh, Bin Tean;
Yeo, Khung Keong;
Cook, Stuart Alexander;
Jamuar, Saumya Shekhar;
Ginsburg, Geoffrey S.;
Orlando, Lori A.;
Tan, Patrick

Publication type:

Article

Family history assessment significantly enhances delivery of precision medicine in the genomics era.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-020-00819-1

By:

Bylstra, Yasmin;
Lim, Weng Khong;
Kam, Sylvia;
Tham, Koei Wan;
Wu, R. Ryanne;
Teo, Jing Xian;
Davila, Sonia;
Kuan, Jyn Ling;
Chan, Sock Hoai;
Bertin, Nicolas;
Yang, Cheng Xi;
Rozen, Steve;
Teh, Bin Tean;
Yeo, Khung Keong;
Cook, Stuart Alexander;
Jamuar, Saumya Shekhar;
Ginsburg, Geoffrey S.;
Orlando, Lori A.;
Tan, Patrick

Publication type:

Article

Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.

Published in:

Nature Biotechnology, 2007, v. 25, n. 6, p. 663, doi. 10.1038/nbt1305

By:

Dupuy, Denis;
Bertin, Nicolas;
Hidalgo, César A;
Venkatesan, Kavitha;
Tu, Domena;
Lee, David;
Rosenberg, Jennifer;
Svrzikapa, Nenad;
Blanc, Aurélie;
Carnec, Alain;
Carvunis, Anne-Ruxandra;
Pulak, Rock;
Shingles, Jane;
Reece-Hoyes, John;
Hunt-Newbury, Rebecca;
Viveiros, Ryan;
Mohler, William A.;
Tasan, Murat;
Roth, Frederick P.;
Le Peuch, Christian

Publication type:

Article

Reply to Toward the complete interactome.

Published in:

2006

By:

Dupuy, Denis;
Bertin, Nicolas;
Cusick, Michael E.;
Han, Jing-Dong J.;
Vidal, Marc

Publication type:

Letter

Effect of sampling on topology predictions of protein-protein interaction networks.

Published in:

Nature Biotechnology, 2005, v. 23, n. 7, p. 839, doi. 10.1038/nbt1116

By:

Han, Jing-Dong J.;
Dupuy, Denis;
Bertin, Nicolas;
Cusick, Michael E.;
Vidal, Marc

Publication type:

Article

Confirmation of Organized Modularity in the Yeast Interactome.

Published in:

2007

By:

Bertin, Nicolas;
Simonis, Nicolas;
Dupuy, Denis;
Cusick, Michael E.;
Han, Jing-Dong J.;
Fraser, Hunter B.;
Roth, Frederick P.;
Vidal, Marc

Publication type:

Letter

Hovering Microswimmers Exhibit Ultrafast Motion to Navigate under Acoustic Forces.

Published in:

Advanced Materials Interfaces, 2018, v. 5, n. 16, p. 1, doi. 10.1002/admi.201800425

By:

Louf, Jean‐françois;
Bertin, Nicolas;
Dollet, Benjamin;
Stephan, Olivier;
Marmottant, Philippe

Publication type:

Article

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3494, doi. 10.1186/1471-2164-15-1177

By:

Vitezic, Morana;
Bertin, Nicolas;
Andersson, Robin;
Lipovich, Leonard;
Kawaji, Hideya;
Lassmann, Timo;
Sandelin, Albin;
Heutink, Peter;
Goldowitz, Dan;
Ha, Thomas;
Peter Zhang;
Patrizi, Annarita;
Fagiolini, Michela;
Forrest, Alistair R. R.;
Carninci, Piero;
Saxena, Alka

Publication type:

Article

The variation landscape of CYP2D6 in a multi-ethnic Asian population.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-67691-6

By:

Maulana, Yusuf;
Toro Jimenez, Rodrigo;
Twesigomwe, David;
Sani, Levana;
Irwanto, Astrid;
Bertin, Nicolas;
Gonzalez-Porta, Mar

Publication type:

Article

Computing virtual dark‐field X‐ray microscopy images of complex discrete dislocation structures from large‐scale molecular dynamics simulations.

Published in:

Journal of Applied Crystallography, 2025, v. 58, n. 2, p. 458, doi. 10.1107/S1600576725000949

By:

Wang, Yifan;
Bertin, Nicolas;
Pal, Dayeeta;
Irvine, Sara J.;
Katagiri, Kento;
Rudd, Robert E.;
Dresselhaus-Marais, Leora E.

Publication type:

Article

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.

Published in:

Nature Methods, 2010, v. 7, n. 7, p. 528, doi. 10.1038/nmeth.1470

By:

Plessy, Charles;
Bertin, Nicolas;
Takahashi, Hazuki;
Simone, Roberto;
Salimullah, Md;
Lassmann, Timo;
Vitezic, Morana;
Severin, Jessica;
Olivarius, Signe;
Lazarevic, Dejan;
Hornig, Nadine;
Orlando, Valerio;
Bell, Ian;
Hui Gao;
Dumais, Jacqueline;
Kapranov, Philipp;
Huaien Wang;
Davis, Carrie A.;
Gingeras, Thomas R.;
Jun Kawai

Publication type:

Article

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Published in:

Nature Methods, 2009, v. 6, n. 1, p. 47, doi. 10.1038/nmeth.1279

By:

Simonis, Nicolas;
Rual, Jean-François;
Carvunis, Anne-Ruxandra;
Tasan, Murat;
Lemmens, Irma;
Hirozane-Kishikawa, Tomoko;
Tong Hao;
Sahalie, Julie M.;
Venkatesan, Kavitha;
Gebreab, Fana;
Cevik, Sebiha;
Klitgord, Niels;
Changyu Fan;
Braun, Pascal;
Ning Li;
Ayivi-Guedehoussou, Nono;
Dann, Elizabeth;
Bertin, Nicolas;
Szeto, David;
Dricot, Amélie

Publication type:

Article

erratum: Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Published in:

2004

By:

Han, Jing-Dong J.;
Bertin, Nicolas;
Hao, Tong;
Goldberg, Debra S.;
Berriz, Gabriel F.;
Zhang, Lan V.;
Dupuy, Denis;
Walhout, Albertha J. M.;
Cusick, Michael E.;
Roth, Frederick P.;
Vidal, Marc

Publication type:

Erratum

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Published in:

Nature, 2004, v. 430, n. 6995, p. 88, doi. 10.1038/nature02555

By:

HN, Jing-Dong J.;
Bertin, Nicolas;
Tong Hao;
Goldberg, Debra S.;
Berriz, Gabriel F.;
Zhang, Lan V.;
Dupuy, Denis;
Walhout, Albertha J.M.;
Cusick, Michael E.;
Roth, Frederick P.;
Vidal, Marc

Publication type:

Article

Analysis of Obstacle Hardening Models Using Dislocation Dynamics: Application to Irradiation-Induced Defects.

Published in:

Metallurgical & Materials Transactions. Part A, 2015, v. 46, n. 8, p. 3761, doi. 10.1007/s11661-015-2935-z

By:

Sobie, Cameron;
Bertin, Nicolas;
Capolungo, Laurent

Publication type:

Article

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.

Published in:

Nature, 2005, v. 436, n. 7052, p. 861, doi. 10.1038/nature03876

By:

Gunsalus, Kristin C.;
Hui Ge;
Schetter, Aaron J.;
Goldberg, Debra S.;
Han, Jing-Dong J.;
Tong Hao;
Berriz, Gabriel F.;
Bertin, Nicolas;
Huang, Jerry;
Ling-Shiang Chuang;
Ning Li;
Ramamurthy Mani;
Hyman, Anthony A.;
Sönnichsen, Birte;
Echeverri, Christophe J.;
Roth, Frederick P.;
Vidal, Marc;
Piano, Fabio

Publication type:

Article

Sweep-tracing algorithm: in silico slip crystallography and tension-compression asymmetry in BCC metals.

Published in:

Materials Theory, 2022, v. 6, n. 1, p. 1, doi. 10.1186/s41313-021-00031-7

By:

Bertin, Nicolas;
Zepeda-Ruiz, L.A.;
Bulatov, V.V.

Publication type:

Article

Slip-free multiplication and complexity of dislocation networks in FCC metals.

Published in:

Materials Theory, 2021, v. 5, n. 1, p. 1, doi. 10.1186/s41313-020-00024-y

By:

Akhondzadeh, Sh.;
Bertin, Nicolas;
Sills, Ryan B.;
Cai, Wei

Publication type:

Article

Gateways to the FANTOM5 promoter level mammalian expression atlas.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0560-6

By:

Lizio, Marina;
Harshbarger, Jayson;
Hisashi Shimoji;
Severin, Jessica;
Takeya Kasukawa;
Sahin, Serkan;
Abugessaisa, Imad;
Shiro Fukuda;
Fumi Hori;
Sachi Ishikawa-Kato;
Mungall, Christopher J.;
Arner, Erik;
Baillie, J. Kenneth;
Bertin, Nicolas;
Hidemasa Bono;
de Hoon, Michiel;
Diehl, Alexander D.;
Dimont, Emmanuel;
Freeman, Tom C.;
Kaori Fujieda

Publication type:

Article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

Published in:

Nature Biotechnology, 2017, v. 35, n. 9, p. 872, doi. 10.1038/nbt.3947

By:

de Rie, Derek;
Abugessaisa, Imad;
Alam, Tanvir;
Arner, Erik;
Arner, Peter;
Ashoor, Haitham;
Åström, Gaby;
Babina, Magda;
Bertin, Nicolas;
Burroughs, A Maxwell;
Carlisle, Ailsa J;
Daub, Carsten O;
Detmar, Michael;
Deviatiiarov, Ruslan;
Fort, Alexandre;
Gebhard, Claudia;
Goldowitz, Daniel;
Guhl, Sven;
Ha, Thomas J;
Harshbarger, Jayson

Publication type:

Article

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

Published in:

Nature Biotechnology, 2014, v. 32, n. 3, p. 217, doi. 10.1038/nbt.2840

By:

Severin, Jessica;
Lizio, Marina;
Harshbarger, Jayson;
Kawaji, Hideya;
Daub, Carsten O;
Hayashizaki, Yoshihide;
Bertin, Nicolas;
Forrest, Alistair R R

Publication type:

Article