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Highly structured water network in crystals of a deoxydinucleoside-drug complex.
Published in:
Nature, 1980, v. 288, n. 5787, p. 129, doi. 10.1038/288129a0
By:
- Neidle, Stephen;
- Berman, Helen M.;
- Shieh, H. S.
Publication type:
Article
Structure of a dinucleoside phosphate-drug complex as model for nucleic acid-drug interaction.
Published in:
Nature, 1977, v. 269, n. 5626, p. 304, doi. 10.1038/269304a0
By:
- Neidle, S.;
- Achari, A.;
- Taylor, G. L.;
- Berman, Helen M.;
- Carrell, H. L.;
- Glusker, J. P.;
- Stallings, W. C.
Publication type:
Article
The RNA Ontology Consortium: An open invitation to the RNA community.
Published in:
Journal of Nuclear Medicine Technology, 2006, v. 34, n. 1, p. 1
By:
- Leontis, Neocles B.;
- Altman, Russ B.;
- Berman, Helen M.;
- Brenner, Steven E.;
- Brown, James W.;
- Engelke, David R.;
- Harvey, Stephen C.;
- Holbrook, Stephen R.;
- Jossinet, Fabrice;
- Lewis, Suzanna E.;
- Major, François;
- Mathews, David H.;
- Richardson, Jane S.;
- Williamson, James R.;
- Westhof, Eric
Publication type:
Article
Developing Community Resources for Nucleic Acid Structures.
Published in:
Life (2075-1729), 2022, v. 12, n. 4, p. N.PAG, doi. 10.3390/life12040540
By:
- Berman, Helen M.;
- Lawson, Catherine L.;
- Schneider, Bohdan
Publication type:
Article
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D464, doi. 10.1093/nar/gky1004
By:
- Burley, Stephen K;
- Berman, Helen M;
- Bhikadiya, Charmi;
- Bi, Chunxiao;
- Chen, Li;
- Di Costanzo, Luigi;
- Christie, Cole;
- Dalenberg, Ken;
- Duarte, Jose M;
- Dutta, Shuchismita;
- Feng, Zukang;
- Ghosh, Sutapa;
- Goodsell, David S;
- Green, Rachel K;
- Guranović, Vladimir;
- Guzenko, Dmytro;
- Hudson, Brian P;
- Kalro, Tara;
- Liang, Yuhe;
- Lowe, Robert
Publication type:
Article
DNAproDB: an interactive tool for structural analysis of DNA--protein complexes.
Published in:
Nucleic Acids Research, 2017, v. 45, n. W1, p. W89, doi. 10.1093/nar/gkx272
By:
- Sagendorf, Jared M.;
- Berman, Helen M.;
- Rohs, Remo
Publication type:
Article
EMDataBank unified data resource for 3DEM.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D396, doi. 10.1093/nar/gkv1126
By:
- Lawson, Catherine L.;
- Patwardhan, Ardan;
- Baker, Matthew L.;
- Hryc, Corey;
- Garcia, Eduardo Sanz;
- Hudson, Brian P.;
- Lagerstedt, Ingvar;
- Ludtke, Steven J.;
- Pintilie, Grigore;
- Sala, Raul;
- Westbrook, John D.;
- Berman, Helen M.;
- Kleywegt, Gerard J.;
- Wah Chiu
Publication type:
Article
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D345, doi. 10.1093/nar/gku1214
By:
- Rose, Peter W.;
- Prlić, Andreas;
- Bi, Chunxiao;
- Bluhm, Wolfgang F.;
- Christie, Cole H.;
- Dutta, Shuchismita;
- Green, Rachel Kramer;
- Goodsell, David S.;
- Westbrook, John D.;
- Woo, Jesse;
- Young, Jasmine;
- Zardecki, Christine;
- Berman, Helen M.;
- Bourne, Philip E.;
- Burley, Stephen K.
Publication type:
Article
The Nucleic Acid Database: new features and capabilities.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D114, doi. 10.1093/nar/gkt980
By:
- Coimbatore Narayanan, Buvaneswari;
- Westbrook, John;
- Ghosh, Saheli;
- Petrov, Anton I.;
- Sweeney, Blake;
- Zirbel, Craig L.;
- Leontis, Neocles B.;
- Berman, Helen M.
Publication type:
Article
The RCSB Protein Data Bank: new resources for research and education.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D475, doi. 10.1093/nar/gks1200
By:
- Rose, Peter W.;
- Bi, Chunxiao;
- Bluhm, Wolfgang F.;
- Christie, Cole H.;
- Dimitropoulos, Dimitris;
- Dutta, Shuchismita;
- Green, Rachel K.;
- Goodsell, David S.;
- Prlić, Andreas;
- Quesada, Martha;
- Quinn, Gregory B.;
- Ramos, Alexander G.;
- Westbrook, John D.;
- Young, Jasmine;
- Zardecki, Christine;
- Berman, Helen M.;
- Bourne, Philip E.
Publication type:
Article
The RCSB Protein Data Bank: redesigned web site and web services.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D392, doi. 10.1093/nar/gkq1021
By:
- Rose, Peter W.;
- Beran, Bojan;
- Bi, Chunxiao;
- Bluhm, Wolfgang F.;
- Dimitropoulos, Dimitris;
- Goodsell, David S.;
- Prlić, Andreas;
- Quesada, Martha;
- Quinn, Gregory B.;
- Westbrook, John D.;
- Young, Jasmine;
- Yukich, Benjamin;
- Zardecki, Christine;
- Berman, Helen M.;
- Bourne, Philip E.
Publication type:
Article
The protein structure initiative structural genomics knowledgebase.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D365, doi. 10.1093/nar/gkn790
By:
- Berman, Helen M.;
- Westbrook, John D.;
- Gabanyi, Margaret J.;
- Tao, Wendy;
- Shah, Raship;
- Kouranov, Andrei;
- Schwede, Torsten;
- Arnold, Konstantin;
- Kiefer, Florian;
- Bordoli, Lorenza;
- Kopp, Jürgen;
- Podvinec, Michael;
- Adams, Paul D.;
- Carter, Lester G.;
- Minor, Wladek;
- Nair, Rajesh;
- Baer, Joshua La
Publication type:
Article
Realism about PDB.
Published in:
2007
By:
- Berman, Helen M;
- Henrick, Kim;
- Nakamura, Haruki;
- Markley, John;
- Bourne, Philip E;
- Westbrook, John
Publication type:
Letter
NMR Exchange Format: a unified and open standard for representation of NMR restraint data.
Published in:
Nature Structural & Molecular Biology, 2015, v. 22, n. 6, p. 433, doi. 10.1038/nsmb.3041
By:
- Gutmanas, Aleksandras;
- Adams, Paul D;
- Bardiaux, Benjamin;
- Berman, Helen M;
- Case, David A;
- Fogh, Rasmus H;
- Güntert, Peter;
- Hendrickx, Pieter M S;
- Herrmann, Torsten;
- Kleywegt, Gerard J;
- Kobayashi, Naohiro;
- Lange, Oliver F;
- Markley, John L;
- Montelione, Gaetano T;
- Nilges, Michael;
- Ragan, Timothy J;
- Schwieters, Charles D;
- Tejero, Roberto;
- Ulrich, Eldon L;
- Velankar, Sameer
Publication type:
Article
Reply to: Building meaningful models of glycoproteins.
Published in:
2007
By:
- Berman, Helen M.;
- Henrick, Kim;
- Nakamura, Haruki;
- Markley, John
Publication type:
Letter
Reply to: Is one solution good enough?
Published in:
2006
By:
- Berman, Helen M.;
- Henrick, Kim;
- Nakamura, Haruki;
- Arnold, Eddy
Publication type:
Letter
Reply to "Giving credit where credit is due".
Published in:
2005
By:
- Berman, Helen M.
Publication type:
Letter
The Protein Data Bank and lessons in data management.
Published in:
Briefings in Bioinformatics, 2004, v. 5, n. 1, p. 23, doi. 10.1093/bib/5.1.23
By:
- Bourne, Philip E.;
- Westbrook, John;
- Berman, Helen M.
Publication type:
Article
Archiving and disseminating integrative structure models.
Published in:
Journal of Biomolecular NMR, 2019, v. 73, n. 6/7, p. 385, doi. 10.1007/s10858-019-00264-2
By:
- Vallat, Brinda;
- Webb, Benjamin;
- Westbrook, John;
- Sali, Andrej;
- Berman, Helen M.
Publication type:
Article
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.
Published in:
Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101425
By:
- Burley, Stephen K.;
- Berman, Helen M.;
- Duarte, Jose M.;
- Feng, Zukang;
- Flatt, Justin W.;
- Hudson, Brian P.;
- Lowe, Robert;
- Peisach, Ezra;
- Piehl, Dennis W.;
- Rose, Yana;
- Sali, Andrej;
- Sekharan, Monica;
- Shao, Chenghua;
- Vallat, Brinda;
- Voigt, Maria;
- Westbrook, John D.;
- Young, Jasmine Y.;
- Zardecki, Christine
Publication type:
Article
Chemical annotation of small and peptide-like molecules at the Protein Data Bank.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat079
By:
- Jasmine Y. Young;
- Zukang Feng;
- Dimitropoulos, Dimitris;
- Sala, Raul;
- Westbrook, John;
- Zhuravleva, Marina;
- Chenghua Shao;
- Quesada, Martha;
- Peisach, Ezra;
- Berman, Helen M.
Publication type:
Article
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. N.PAG, doi. 10.1093/database/bar003
By:
- Bluhm, Wolfgang F.;
- Beran, Bojan;
- Bi, Chunxiao;
- Dimitropoulos, Dimitris;
- Prlić, Andreas;
- Quinn, Gregory B.;
- Rose, Peter W.;
- Shah, Chaitali;
- Young, Jasmine;
- Yukich, Benjamin;
- Berman, Helen M.;
- Bourne, Philip E.
Publication type:
Article
Hydration of Nucleic Acid Crystals<sup> a</sup>.
Published in:
Annals of the New York Academy of Sciences, 1986, v. 482, n. 1, p. 166, doi. 10.1111/j.1749-6632.1986.tb20948.x
By:
- BERMAN, HELEN M.
Publication type:
Article
Editorials.
Published in:
Biopolymers, 1997, v. 44, n. 1, p. 1, doi. 10.1002/(SICI)1097-0282(1997)44:1<1::AID-BIP1>3.0.CO;2-Z
By:
- Goodman, Murray;
- Breslaur, Kenneth J.;
- Berman, Helen M.
Publication type:
Article
Crystal studies of B-DNA: The answers and the questions.
Published in:
Biopolymers, 1997, v. 44, n. 1, p. 23, doi. 10.1002/(SICI)1097-0282(1997)44:1<23::AID-BIP3>3.0.CO;2-1
By:
- Berman, Helen M.
Publication type:
Article
Conformations of the sugar-phosphate backbone in helical DNA crystal structures.
Published in:
Biopolymers, 1997, v. 42, n. 1, p. 113, doi. 10.1002/(SICI)1097-0282(199707)42:1<113::AID-BIP10>3.0.CO;2-O
By:
- Schneider, Bohdan;
- Neidle, Stephen;
- Berman, Helen M.
Publication type:
Article
Crystal structure and nmr conformation of a cyclic pseudotetrapeptide containing urethane backbone linkages.
Published in:
Biopolymers, 1994, v. 34, n. 3, p. 403, doi. 10.1002/bip.360340312
By:
- Parkinson, Gary N.;
- Wu, Youling;
- Fan, Pei;
- Kohn, Joachim;
- Baum, Jean;
- Berman, Helen M.
Publication type:
Article
Hydration of DNA bases: Analysis of crystallographic data.
Published in:
Biopolymers, 1992, v. 32, n. 7, p. 725, doi. 10.1002/bip.360320703
By:
- Schneider, Bohdan;
- Cohen, Dawn;
- Berman, Helen M.
Publication type:
Article
A Monte Carlo simulation study of the aqueous hydration of r(GpC)<sub>2</sub>: Comparison with crystallographic ordered water sites.
Published in:
Biopolymers, 1990, v. 29, n. 4/5, p. 771, doi. 10.1002/bip.360290411
By:
- Subramanian, P. S.;
- Pitchumani, S.;
- Beveridge, D. L.;
- Berman, Helen M.
Publication type:
Article
The crystal and molecular structure of the anticancer drug actinomycin D-some explanations for its unusual properties.
Published in:
Biopolymers, 1988, v. 27, n. 5, p. 843, doi. 10.1002/bip.360270511
By:
- Ginell, Stephan;
- Lessinger, Leslie;
- Berman, Helen M.
Publication type:
Article
Molecular and crystal structure of an intercalation complex: Proflavine-cytidylyl-(3′,5′)-guanosine.
Published in:
Biopolymers, 1979, v. 18, n. 10, p. 2405, doi. 10.1002/bip.1979.360181004
By:
- Berman, Helen M.;
- Stallings, W.;
- Carrell, H. L.;
- Glusker, J. P.;
- Neidle, S.;
- Taylor, G.;
- Achari, A.
Publication type:
Article
Safeguarding the integrity of protein archive.
Published in:
2010
By:
- Berman, Helen M.;
- Kleywegt, Gerard J.;
- Nakamura, Haruki;
- Markley, John L.;
- Burley, Stephen K.
Publication type:
Letter
The RCSB PDB information portal for structural genomics.
Published in:
Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d302, doi. 10.1093/nar/gkj120
By:
- Kouranov, Andrei;
- Xie, Lei;
- de la Cruz, Joanna;
- Chen, Li;
- Westbrook, John;
- Bourne, Philip E.;
- Berman, Helen M.
Publication type:
Article
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
Published in:
Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d233
By:
- Deshpande, Nita;
- Addess, Kenneth J.;
- Bluhm, Wolfgang F.;
- Merino-Ott, Jeffrey C.;
- Townsend-Merino, Wayne;
- Zhang, Qing;
- Knezevich, Charlie;
- Xie, Lie;
- Chen, Li;
- Feng, Zukang;
- Kramer Green, Rachel;
- Flippen-Anderson, Judith L.;
- Westbrook, John;
- Berman, Helen M.;
- Bourne, Philip E.
Publication type:
Article
RNA conformational classes.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 5, p. 1666, doi. 10.1093/nar/gkh333
By:
- Schneider, Bohdan;
- Morávek, Zdeněk;
- Berman, Helen M.
Publication type:
Article
The distribution and query systems of the RCSB Protein Data Bank.
Published in:
Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d223
By:
- Bourne, Philip E.;
- Addess, Kenneth J.;
- Bluhm, Wolfgang F.;
- Chen, Li;
- Deshpande, Nita;
- Feng, Zukang;
- Fleri, Ward;
- Green, Rachel;
- Merino‐Ott, Jeffrey C.;
- Townsend‐Merino, Wayne;
- Weissig, Helge;
- Westbrook, John;
- Berman, Helen M.
Publication type:
Article
Using electrostatic potentials to predict DNA‐binding sites on DNA‐binding proteins.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 24, p. 7189, doi. 10.1093/nar/gkg922
By:
- Jones, Susan;
- Shanahan, Hugh P.;
- Berman, Helen M.;
- Thornton, Janet M.
Publication type:
Article
The Protein Data Bank and structural genomics.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 1, p. 489, doi. 10.1093/nar/gkg068
By:
- Westbrook, John;
- Feng, Zukang;
- Chen, Li;
- Yang, Huanwang;
- Berman, Helen M.
Publication type:
Article
The Protein Data Bank: unifying the archive.
Published in:
Nucleic Acids Research, 2002, v. 30, n. 1, p. 245, doi. 10.1093/nar/30.1.245
By:
- Westbrook, John;
- Feng, Zukang;
- Jain, Shri;
- Bhat, T. N.;
- Thanki, Narmada;
- Ravichandran, Veerasamy;
- Gilliland, Gary L.;
- Bluhm, Wolfgang;
- Weissig, Helge;
- Greer, Douglas S.;
- Bourne, Philip E.;
- Berman, Helen M.
Publication type:
Article
Protein–RNA interactions: a structural analysis.
Published in:
Nucleic Acids Research, 2001, v. 29, n. 4, p. 943, doi. 10.1093/nar/29.4.943
By:
- Jones, Susan;
- Daley, David T. A.;
- Luscombe, Nicholas M.;
- Berman, Helen M.;
- Thornton, Janet M.
Publication type:
Article
The PDB data uniformity project.
Published in:
Nucleic Acids Research, 2001, v. 29, n. 1, p. 214, doi. 10.1093/nar/29.1.214
By:
- Bhat, T. N.;
- Bourne, Philip;
- Feng, Zukang;
- Gilliland, Gary;
- Jain, Shri;
- Ravichandran, Veerasamy;
- Schneider, Bohdan;
- Schneider, Kata;
- Thanki, Narmada;
- Weissig, Helge;
- Westbrook, John;
- Berman, Helen M.
Publication type:
Article
The Protein Data Bank.
Published in:
Nucleic Acids Research, 2000, v. 28, n. 1, p. 235, doi. 10.1093/nar/28.1.235
By:
- Berman, Helen M.;
- Westbrook, John;
- Feng, Zukang;
- Gilliland, Gary;
- Bhat, T. N.;
- Weissig, Helge;
- Shindyalov, Ilya N.;
- Bourne, Philip E.
Publication type:
Article
New system for archiving integrative structures.
Published in:
Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 12, p. 1486, doi. 10.1107/S2059798321010871
By:
- Vallat, Brinda;
- Webb, Benjamin;
- Fayazi, Maryam;
- Voinea, Serban;
- Tangmunarunkit, Hongsuda;
- Ganesan, Sai J.;
- Lawson, Catherine L.;
- Westbrook, John D.;
- Kesselman, Carl;
- Sali, Andrej;
- Berman, Helen M.
Publication type:
Article
Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
Published in:
Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 4, p. 451, doi. 10.1107/S2059798319004522
By:
- Adams, Paul D.;
- Afonine, Pavel V.;
- Baskaran, Kumaran;
- Berman, Helen M.;
- Berrisford, John;
- Bricogne, Gerard;
- Brown, David G.;
- Burley, Stephen K.;
- Chen, Minyu;
- Feng, Zukang;
- Flensburg, Claus;
- Gutmanas, Aleksandras;
- Hoch, Jeffrey C.;
- Ikegawa, Yasuyo;
- Kengaku, Yumiko;
- Krissinel, Eugene;
- Kurisu, Genji;
- Liang, Yuhe;
- Liebschner, Dorothee;
- Mak, Lora
Publication type:
Article
The evolution of the RCSB Protein Data Bank website.
Published in:
WIREs: Computational Molecular Science, 2011, v. 1, n. 5, p. 782, doi. 10.1002/wcms.57
By:
- Bourne, Philip E.;
- Beran, Bojan;
- Bi, Chunxiao;
- Bluhm, Wolfgang F.;
- Dimitropoulos, Dimitris;
- Feng, Zukang;
- Goodsell, David S.;
- Prlić, Andreas;
- B. Quinn, Gregory;
- W. Rose, Peter;
- Westbrook, John;
- Yukich, Benjamin;
- Young, Jasmine;
- Zardecki, Christine;
- Berman, Helen M.
Publication type:
Article
DCC: a Swiss army knife for structure factor analysis and validation.
Published in:
Journal of Applied Crystallography, 2016, v. 49, n. 3, p. 1081, doi. 10.1107/S1600576716004428
By:
- Yang, Huanwang;
- Peisach, Ezra;
- Westbrook, John D.;
- Young, Jasmine;
- Berman, Helen M.;
- Burley, Stephen K.
Publication type:
Article
Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences.
Published in:
Journal of Applied Crystallography, 2010, v. 43, n. 5, p. 1224, doi. 10.1107/S002188981002371X
By:
- Dutta, Shuchismita;
- Zardecki, Christine;
- Goodsell, David S.;
- Berman, Helen M.
Publication type:
Article
Anticipating innovations in structural biology.
Published in:
Quarterly Reviews of Biophysics, 2018, v. 51, p. 1, doi. 10.1017/S0033583518000057
By:
- Berman, Helen M.;
- Lawson, Catherine L.;
- Vallat, Brinda;
- Gabanyi, Margaret J.
Publication type:
Article
RNA structure.
Published in:
Quarterly Reviews of Biophysics, 1977, v. 10, n. 2, p. 138, doi. 10.1017/S0033583500000202
By:
- Kallenbach, Neville R.;
- Berman, Helen M.
Publication type:
Article
Sequence dependent conformational variations of collagen triple-helical structure.
Published in:
Nature Structural Biology, 1999, v. 6, n. 5, p. 454
By:
- Kramer, Rachel Z.;
- Bella, Jordi;
- Mayville, Patricia;
- Brodsky, Barbara;
- Berman, Helen M.
Publication type:
Article

Found: 66