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Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon.
- Published in:
- Molecular Biology & Evolution, 2024, v. 41, n. 3, p. 1, doi. 10.1093/molbev/msae050
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- Publication type:
- Article
Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines.
- Published in:
- Genetics, 2022, v. 221, n. 3, p. 1, doi. 10.1093/genetics/iyac077
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- Publication type:
- Article
Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture.
- Published in:
- Genetics, 2021, v. 219, n. 2, p. 1, doi. 10.1093/genetics/iyab113
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- Publication type:
- Article
An Age-of-Allele Test of Neutrality for Transposable Element Insertions.
- Published in:
- Genetics, 2014, v. 196, n. 2, p. 523, doi. 10.1534/genetics.113.158147
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- Publication type:
- Article
McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data.
- Published in:
- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 8, p. 2763, doi. 10.1534/g3.117.043893
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- Publication type:
- Article
Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle.
- Published in:
- G3: Genes | Genomes | Genetics, 2015, v. 5, n. 12, p. 2843, doi. 10.1534/g3.115.021931
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- Publication type:
- Article
Conserved Noncoding Elements Influence the Transposable Element Landscape in Drosophila.
- Published in:
- Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1533, doi. 10.1093/gbe/evy104
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- Publication type:
- Article
Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster.
- Published in:
- Genome Biology & Evolution, 2009, v. 1, p. 439, doi. 10.1093/gbe/evp048
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- Publication type:
- Article
Whole genome screen reveals a novel relationship between Wolbachia levels and Drosophila host translation.
- Published in:
- PLoS Pathogens, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.ppat.1007445
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- Publication type:
- Article
Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 21, p. e124, doi. 10.1093/nar/gkac794
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- Publication type:
- Article
Unique transposon landscapes are pervasive across Drosophila melanogaster genomes.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 22, p. 10655, doi. 10.1093/nar/gkv1193
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- Publication type:
- Article
Drosophila innate immunity: regional and functional specialization of prophenoloxidases.
- Published in:
- BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0193-6
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- Publication type:
- Article
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.
- Published in:
- BMC Biology, 2005, v. 3, p. 1, doi. 10.1186/1741-7007-3-24
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- Publication type:
- Article
Principles of Genome Evolution in the Drosophila melanogaster Species Group.
- Published in:
- PLoS Biology, 2007, v. 5, n. 6, p. e152, doi. 10.1371/journal.pbio.0050152
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- Publication type:
- Article
Functional Evolution of a cis-Regulatory Module.
- Published in:
- PLoS Biology, 2005, v. 3, n. 4, p. 588, doi. 10.1371/journal.pbio.0030093
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- Publication type:
- Article
Functional Evolution of a cis-Regulatory Module.
- Published in:
- PLoS Biology, 2005, v. 3, n. 3, p. 1, doi. 10.1371/journal.pbio.0030093
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- Publication type:
- Article
Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 1, p. 95, doi. 10.1371/journal.pcbi.0030007
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- Publication type:
- Article
Combined Evidence Annotation of Transposable Elements in Genome Sequences.
- Published in:
- PLoS Computational Biology, 2005, v. 1, n. 2, p. 166, doi. 10.1371/journal.pcbi.0010022
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- Publication type:
- Article
Trapping a somatic endogenous retrovirus into a germline piRNA cluster immunizes the germline against further invasion.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1736-x
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- Publication type:
- Article
Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster.
- Published in:
- PLoS Genetics, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.pgen.1003129
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- Publication type:
- Article
Gene expression divergence recapitulates the developmental hourglass model.
- Published in:
- Nature, 2010, v. 468, n. 7325, p. 811, doi. 10.1038/nature09634
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- Publication type:
- Article
BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.
- Published in:
- Bioinformatics, 2012, v. 28, n. 16, p. 2154, doi. 10.1093/bioinformatics/bts332
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- Publication type:
- Article
The GNAT library for local and remote gene mention normalization.
- Published in:
- Bioinformatics, 2011, v. 27, n. 19, p. 2769, doi. 10.1093/bioinformatics/btr455
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- Publication type:
- Article
Annotating genes and genomes with DNA sequences extracted from biomedical articles.
- Published in:
- Bioinformatics, 2011, v. 27, n. 7, p. 980, doi. 10.1093/bioinformatics/btr043
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- Publication type:
- Article
Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
- Published in:
- Bioinformatics, 2006, v. 22, n. 23, p. 2858, doi. 10.1093/bioinformatics/btl499
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- Publication type:
- Article
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
- Published in:
- Bioinformatics, 2005, v. 21, n. 8, p. 1747, doi. 10.1093/bioinformatics/bti173
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- Publication type:
- Article
Discovering and detecting transposable elements in genome sequences.
- Published in:
- Briefings in Bioinformatics, 2007, v. 8, n. 6, p. 382, doi. 10.1093/bib/bbm048
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- Publication type:
- Article
Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast.
- Published in:
- Mobile DNA, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13100-023-00296-4
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- Publication type:
- Article
Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered.
- Published in:
- Mobile DNA, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13100-020-0205-0
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- Publication type:
- Article
Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus.
- Published in:
- Mobile DNA, 2018, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13100-018-0122-7
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- Publication type:
- Article
LINNAEUS: A species name identification systemfor biomedical literature.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 85, doi. 10.1186/1471-2105-11-85
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- Publication type:
- Article
Benchmarking tools for the alignment of functional noncoding DNA.
- Published in:
- BMC Bioinformatics, 2004, v. 5, p. 6, doi. 10.1186/1471-2105-5-6
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- Publication type:
- Article
Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae.
- Published in:
- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050978
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- Publication type:
- Article
Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster.
- Published in:
- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030008
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- Publication type:
- Article
pubmed2ensembl: A Resource for Mining the Biological Literature on Genes.
- Published in:
- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024716
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- Publication type:
- Article
Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast.
- Published in:
- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0011935
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- Publication type:
- Article
Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89091-w
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- Publication type:
- Article
Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
- Published in:
- PLoS Genetics, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pgen.1008632
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- Publication type:
- Article
A Large Palindrome With Interchromosomal Gene Duplications in the Pericentromeric Region of the D. melanogaster Y Chromosome.
- Published in:
- Molecular Biology & Evolution, 2011, v. 28, n. 7, p. 1967, doi. 10.1093/molbev/msr034
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- Publication type:
- Article
Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila.
- Published in:
- Molecular Biology & Evolution, 2007, v. 24, n. 10, p. 2222, doi. 10.1093/molbev/msm150
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- Publication type:
- Article
Tracing the Evolutionary History of Drosophila Regulatory Regions with Models that Identify Transcription Factor Binding Sites.
- Published in:
- Molecular Biology & Evolution, 2003, v. 20, n. 5, p. 703, doi. 10.1093/molbev/msg077
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- Publication type:
- Article
A novel transposable element-based authentication protocol for Drosophila cell lines.
- Published in:
- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 2, p. 1, doi. 10.1093/g3journal/jkab403
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- Publication type:
- Article
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.
- Published in:
- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401534
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- Publication type:
- Article
Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees.
- Published in:
- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 11, p. 3547, doi. 10.1534/g3.119.400486
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- Publication type:
- Article
Population genomics of domestic and wild yeasts.
- Published in:
- 2009
- By:
- Publication type:
- Letter
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D118, doi. 10.1093/nar/gkq999
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- Publication type:
- Article
Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 19, p. 6199, doi. 10.1093/nar/gkn563
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- Publication type:
- Article
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
- Published in:
- Nucleic Acids Research, 2008, v. 36, p. D594
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- Publication type:
- Article
Bringing PLOS Genetics Editors to Preprint Servers.
- Published in:
- 2016
- By:
- Publication type:
- Editorial