Works by Berezikov, Eugene

Results: 59

Resilience to aging in the regeneration‐capable flatworm <italic>Macrostomum lignano</italic>.

Published in:

Aging Cell, 2018, v. 17, n. 3, p. 1, doi. 10.1111/acel.12739

By:

Mouton, Stijn;
Grudniewska, Magda;
Glazenburg, Lisa;
Guryev, Victor;
Berezikov, Eugene

Publication type:

Article

Mouse microRNA profiles determined with a new and sensitive cloning method.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 17, p. e115, doi. 10.1093/nar/gkl653

By:

Takada, Shuji;
Berezikov, Eugene;
Yamashita, Yoshihiro;
Lagos-Quintana, Mariana;
Kloosterman, Wigard P.;
Enomoto, Munehiro;
Hatanaka, Hisashi;
Fujiwara, Shin-ichiro;
Watanabe, Hideki;
Soda, Manabu;
Choi, Young Lim;
Plasterk, Ronald H. A.;
Cuppen, Edwin;
Mano, Hiroyuki

Publication type:

Article

Cloning and expression of new microRNAs from zebrafish.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 9, p. 2558, doi. 10.1093/nar/gkl278

By:

Kloosterman, Wigard P.;
Steiner, Florian A.;
Berezikov, Eugene;
de Bruijn, Ewart;
van de Belt, Jose;
Verheul, Mark;
Cuppen, Edwin;
Plasterk, Ronald H.A.

Publication type:

Article

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w447, doi. 10.1093/nar/gki378

By:

Berezikov, Eugene;
Guryev, Victor;
Cuppen, Edwin

Publication type:

Article

Homologous gene targeting in Caenorhabditis elegans by biolistic transformation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 4, p. e40, doi. 10.1093/nar/gnh033

By:

Berezikov, Eugene;
Bargmann, Cornelia I.;
Plasterk, Ronald H. A.

Publication type:

Article

Bile proteome reveals biliary regeneration during normothermic preservation of human donor livers.

Published in:

Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-43368-y

By:

Thorne, Adam M.;
Wolters, Justina C.;
Lascaris, Bianca;
Bodewes, Silke B.;
Lantinga, Veerle A.;
van Leeuwen, Otto B.;
de Jong, Iris E. M.;
Ustyantsev, Kirill;
Berezikov, Eugene;
Lisman, Ton;
Kuipers, Folkert;
Porte, Robert J.;
de Meijer, Vincent E.

Publication type:

Article

A pan‐metazoan concept for adult stem cells: the wobbling Penrose landscape.

Published in:

Biological Reviews, 2022, v. 97, n. 1, p. 299, doi. 10.1111/brv.12801

By:

Rinkevich, Baruch;
Ballarin, Loriano;
Martinez, Pedro;
Somorjai, Ildiko;
Ben‐Hamo, Oshrat;
Borisenko, Ilya;
Berezikov, Eugene;
Ereskovsky, Alexander;
Gazave, Eve;
Khnykin, Denis;
Manni, Lucia;
Petukhova, Olga;
Rosner, Amalia;
Röttinger, Eric;
Spagnuolo, Antonietta;
Sugni, Michela;
Tiozzo, Stefano;
Hobmayer, Bert

Publication type:

Article

Extremely stable Piwi-induced gene silencing in Caenorhabditis elegans.

Published in:

EMBO Journal, 2012, v. 31, n. 16, p. 3422, doi. 10.1038/emboj.2012.213

By:

Luteijn, Maartje J;
van Bergeijk, Petra;
Kaaij, Lucas J T;
Almeida, Miguel Vasconcelos;
Roovers, Elke F;
Berezikov, Eugene;
Ketting, René F

Publication type:

Article

Hen1 is required for oocyte development and piRNA stability in zebrafish.

Published in:

EMBO Journal, 2012, v. 31, n. 1, p. 248, doi. 10.1038/emboj.2011.462

By:

Kamminga, Leonie M;
Luteijn, Maartje J;
den Broeder, Marjo J;
Redl, Stefan;
Kaaij, Lucas JT;
Roovers, Elke F;
Ladurner, Peter;
Berezikov, Eugene;
Ketting, René F

Publication type:

Article

Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish.

Published in:

EMBO Journal, 2011, v. 30, n. 16, p. 3298, doi. 10.1038/emboj.2011.228

By:

Huang, Hsin-Yi;
Houwing, Saskia;
Kaaij, Lucas J T;
Meppelink, Amanda;
Redl, Stefan;
Gauci, Sharon;
Vos, Harmjan;
Draper, Bruce W;
Moens, Cecilia B;
Burgering, Boudewijn M;
Ladurner, Peter;
Krijgsveld, Jeroen;
Berezikov, Eugene;
Ketting, René F

Publication type:

Article

Hen1 is required for oocyte development and piRNA stability in zebrafish.

Published in:

EMBO Journal, 2010, v. 29, n. 21, p. 3688, doi. 10.1038/emboj.2010.233

By:

Kamminga, Leonie M.;
Luteijn, Maartje J.;
den Broeder, Marjo J.;
Redl, Stefan;
Kaaij, Lucas J. T.;
Roovers, Elke F.;
Ladurner, Peter;
Berezikov, Eugene;
Ketting, René F

Publication type:

Article

Zili is required for germ cell differentiation and meiosis in zebrafish.

Published in:

EMBO Journal, 2008, v. 27, n. 20, p. 2702, doi. 10.1038/emboj.2008.204

By:

Houwing, Saskia;
Berezikov, Eugene;
Ketting, René F

Publication type:

Article

The Evolution of SINEs and LINEs in the Genus Chironomus (Diptera).

Published in:

Journal of Molecular Evolution, 2004, v. 58, n. 3, p. 269, doi. 10.1007/s00239-003-2549-8

By:

Papusheva, Ekaterina;
Gruhl, Mary C.;
Berezikov, Eugene;
Groudieva, Tatiana;
Scherbik, Svetlana V.;
Martin, Jon;
Blinov, Alexander;
Bergtrom, Gerald

Publication type:

Article

Influence of temperature on development, reproduction and regeneration in the flatworm model organism, Macrostomum lignano.

Published in:

Zoological Letters, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1186/s40851-019-0122-6

By:

Wudarski, Jakub;
Ustyantsev, Kirill;
Glazenburg, Lisa;
Berezikov, Eugene

Publication type:

Article

TIM29 is required for enhanced stem cell activity during regeneration in the flatworm Macrostomum lignano.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80682-7

By:

Mouton, Stijn;
Ustyantsev, Kirill;
Beltman, Frank;
Glazenburg, Lisa;
Berezikov, Eugene

Publication type:

Article

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02214-8

By:

Wudarski, Jakub;
Simanov, Daniil;
Ustyantsev, Kirill;
de Mulder, Katrien;
Grelling, Margriet;
Grudniewska, Magda;
Beltman, Frank;
Glazenburg, Lisa;
Demircan, Turan;
Wunderer, Julia;
Weihong Qi;
Vizoso, Dita B.;
Weissert, Philipp M.;
Olivieri, Daniel;
Mouton, Stijn;
Guryev, Victor;
Aboobaker, Aziz;
Schärer, Lukas;
Ladurner, Peter;
Berezikov, Eugene

Publication type:

Article

SEX ALLOCATION ADJUSTMENT TO MATING GROUP SIZE IN A SIMULTANEOUS HERMAPHRODITE.

Published in:

Evolution, 2013, v. 67, n. 11, p. 3233, doi. 10.1111/evo.12189

By:

Janicke, Tim;
Marie‐Orleach, Lucas;
De Mulder, Katrien;
Berezikov, Eugene;
Ladurner, Peter;
Vizoso, Dita B.;
Schärer, Lukas

Publication type:

Article

Evidence for Karyotype Polymorphism in the Free-Living Flatworm, Macrostomum lignano, a Model Organism for Evolutionary and Developmental Biology.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0164915

By:

Zadesenets, Kira S.;
Vizoso, Dita B.;
Schlatter, Aline;
Konopatskaia, Irina D.;
Berezikov, Eugene;
Schärer, Lukas;
Rubtsov, Nikolay B.

Publication type:

Article

Diversity of microRNAs in human and chimpanzee brain.

Published in:

Nature Genetics, 2006, v. 38, n. 12, p. 1375, doi. 10.1038/ng1914

By:

Berezikov, Eugene;
Thuemmler, Fritz;
van Laake, Linda W.;
Kondova, Ivanela;
Bontrop, Ronald;
Cuppen, Edwin;
Plasterk, Ronald H. A.

Publication type:

Article

Approaches to microRNA discovery.

Published in:

Nature Genetics, 2006, v. 38, p. S2, doi. 10.1038/ng1794

By:

Berezikov, Eugene;
Cuppen, Edwin;
Plasterk, Ronald H. A.

Publication type:

Article

Sex allocation plasticity on a transcriptome scale: Socially sensitive gene expression in a simultaneous hermaphrodite.

Published in:

Molecular Ecology, 2019, v. 28, n. 9, p. 2321, doi. 10.1111/mec.15077

By:

Giannakara, Athina;
Schärer, Lukas;
Ramm, Steven A.;
Arbore, Roberto;
Lengerer, Birgit;
Pjeta, Robert;
Wunderer, Julia;
Ladurner, Peter;
Berezikov, Eugene

Publication type:

Article

The ctenophore genome and the evolutionary origins of neural systems.

Published in:

Nature, 2014, v. 510, n. 7503, p. 109, doi. 10.1038/nature13400

By:

Moroz, Leonid L.;
Kocot, Kevin M.;
Citarella, Mathew R.;
Dosung, Sohn;
Norekian, Tigran P.;
Povolotskaya, Inna S.;
Grigorenko, Anastasia P.;
Dailey, Christopher;
Berezikov, Eugene;
Buckley, Katherine M.;
Ptitsyn, Andrey;
Reshetov, Denis;
Mukherjee, Krishanu;
Moroz, Tatiana P.;
Bobkova, Yelena;
Yu, Fahong;
Kapitonov, Vladimir V.;
Jurka, Jerzy;
Bobkov, Yuri V.;
Swore, Joshua J.

Publication type:

Article

Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics.

Published in:

Biofouling, 2016, v. 32, n. 9, p. 1115, doi. 10.1080/08927014.2016.1233325

By:

Rodrigues, Marcelo;
Ostermann, Thomas;
Kremeser, Leopold;
Lindner, Herbert;
Beisel, Christian;
Berezikov, Eugene;
Hobmayer, Bert;
Ladurner, Peter

Publication type:

Article

Rodent heart failure models do not reflect the human circulating microRNA signature in heart failure.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177242

By:

Vegter, Eline L.;
Ovchinnikova, Ekaterina S.;
Silljé, Herman H. W.;
Meems, Laura M. G.;
van der Pol, Atze;
van der Velde, A. Rogier;
Berezikov, Eugene;
Voors, Adriaan A.;
de Boer, Rudolf A.;
van der Meer, Peter

Publication type:

Article

GENOTRACE: cDNA-based local GENOme assembly from TRACE archives.

Published in:

Bioinformatics, 2002, v. 18, n. 10, p. 1396, doi. 10.1093/bioinformatics/18.10.1396

By:

Berezikov, Eugene;
Plasterk, Ronald H.A.;
Cuppen, Edwin

Publication type:

Article

Evolution of microRNA diversity and regulation in animals.

Published in:

2011

By:

Berezikov, Eugene

Publication type:

journal article

Optimized protocols for RNA interference in Macrostomum lignano.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 5, p. 1, doi. 10.1093/g3journal/jkae037

By:

Mouton, Stijn;
Mougel, Alexandra;
Ustyantsev, Kirill;
Dissous, Colette;
Melnyk, Oleg;
Berezikov, Eugene;
Vicogne, Jérôme

Publication type:

Article

Genome assembly of the acoel flatworm Symsagittifera roscoffensis, a model for research on body plan evolution and photosymbiosis.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 2, p. 1, doi. 10.1093/g3journal/jkac336

By:

Martinez, Pedro;
Ustyantsev, Kirill;
Biryukov, Mikhail;
Mouton, Stijn;
Glasenburg, Liza;
Sprecher, Simon G.;
Bailly, Xavier;
Berezikov, Eugene

Publication type:

Article

Accumulation of 5-oxoproline in myocardial dysfunction and the protective effects of OPLAH.

Published in:

Science Translational Medicine, 2017, v. 9, n. 415, p. 1, doi. 10.1126/scitranslmed.aam8574

By:

van der Pol, Atze;
Gil, Andres;
Silljé, Herman H. W.;
Tromp, Jasper;
Ovchinnikova, Ekaterina S.;
Vreeswijk-Baudoin, Inge;
Hoes, Martijn;
Domian, Ibrahim J.;
van de Sluis, Bart;
van Deursen, Jan M.;
Voors, Adriaan A.;
van Veldhuisen, Dirk J.;
van Gilst, Wiek H.;
Berezikov, Eugene;
van der Harst, Pim;
de Boer, Rudolf A.;
Bischoff, Rainer;
van der Meer, Peter

Publication type:

Article

Mlig-SKP1 Gene Is Required for Spermatogenesis in the Flatworm Macrostomum lignano.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 15110, doi. 10.3390/ijms232315110

By:

Biryukov, Mikhail;
Dmitrieva, Anastasia;
Vavilova, Valeriya;
Ustyantsev, Kirill;
Bazarova, Erzhena;
Sukhikh, Igor;
Berezikov, Eugene;
Blinov, Alexandr

Publication type:

Article

Selenoprotein DIO2 Is a Regulator of Mitochondrial Function, Morphology and UPRmt in Human Cardiomyocytes.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 21, p. 11906, doi. 10.3390/ijms222111906

By:

Bomer, Nils;
Pavez-Giani, Mario G.;
Deiman, Frederik E.;
Linders, Annet N.;
Hoes, Martijn F.;
Baierl, Christiane L.J.;
Oberdorf-Maass, Silke U.;
de Boer, Rudolf A.;
Silljé, Herman H.W.;
Berezikov, Eugene;
Simonides, Warner S.;
Westenbrink, B. Daan;
van der Meer, Peter

Publication type:

Article

Identification of Waldo-A and Waldo-B, Two Closely Related Non-LTR Retrotransposons in Drosophila.

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 2, p. 196, doi. 10.1093/oxfordjournals.molbev.a003793

By:

Busseau, Isabelle;
Berezikov, Eugène;
Bucheton, Alain

Publication type:

Article

Low circulating microRNA levels in heart failure patients are associated with atherosclerotic disease and cardiovascular-related rehospitalizations.

Published in:

Clinical Research in Cardiology, 2017, v. 106, n. 8, p. 598, doi. 10.1007/s00392-017-1096-z

By:

Vegter, Eline;
Ovchinnikova, Ekaterina;
Veldhuisen, Dirk;
Jaarsma, Tiny;
Berezikov, Eugene;
Meer, Peter;
Voors, Adriaan

Publication type:

Article

Expression of Concern: Guanine quadruplex structures localize to heterochromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6253, doi. 10.1093/nar/gkx301

By:

Hoffmann, Roland F.;
Moshkin, Yuri M.;
Mouton, Stijn;
Grzeschik, Nicola A.;
Kalicharan, Ruby D.;
Kuipers, Jeroen;
Wolters, Anouk H. G.;
Nishida, Kazuki;
Romashchenko, Aleksander V.;
Postberg, Jan;
Lipps, Hans;
Berezikov, Eugene;
Sibon, Ody C. M.;
Giepmans, Ben N. G.;
Lansdorp, Peter M.

Publication type:

Article

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1036, doi. 10.1093/nar/gkv978

By:

Chereji, Rǎzvan V.;
Tsung-Wai Kan;
Grudniewska, Magda K.;
Romashchenko, Alexander V.;
Berezikov, Eugene;
Zhimulev, Igor F.;
Guryev, Victor;
Morozov, Alexandre V.;
Moshkin, Yuri M.

Publication type:

Article

Guanine quadruplex structures localize to heterochromatin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 152, doi. 10.1093/nar/gkv900

By:

Hoffmann, Roland F.;
Moshkin, Yuri M.;
Mouton, Stijn;
Grzeschik, Nicola A.;
Kalicharan, Ruby D.;
Kuipers, Jeroen;
Wolters, Anouk H.G.;
Nishida, Kazuki;
Romashchenko, Aleksander V.;
Postberg, Jan;
Lipps, Hans;
Berezikov, Eugene;
Sibon, Ody C.M.;
Giepmans, Ben N.G.;
Lansdorp, Peter M.

Publication type:

Article

microRNAs associated with the different human Argonaute proteins.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 19, p. 9850, doi. 10.1093/nar/gks705

By:

Dueck, Anne;
Ziegler, Christian;
Eichner, Alexander;
Berezikov, Eugene;
Meister, Gunter

Publication type:

Article

The free-living flatworm Macrostomum lignano.

Published in:

EvoDevo, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13227-020-00150-1

By:

Wudarski, Jakub;
Egger, Bernhard;
Ramm, Steven A.;
Schärer, Lukas;
Ladurner, Peter;
Zadesenets, Kira S.;
Rubtsov, Nikolay B.;
Mouton, Stijn;
Berezikov, Eugene

Publication type:

Article

MicroRNA mir-34 provides robustness to environmental stress response via the DAF-16 network in C. elegans.

Published in:

Scientific Reports, 2016, p. 36766, doi. 10.1038/srep36766

By:

Isik, Meltem;
Blackwell, T. Keith;
Berezikov, Eugene

Publication type:

Article

miR-378a-3p modulates tamoxifen sensitivity in breast cancer MCF-7 cells through targeting GOLT1A.

Published in:

Scientific Reports, 2015, p. 13170, doi. 10.1038/srep13170

By:

Ikeda, Kazuhiro;
Horie-Inoue, Kuniko;
Ueno, Toshihide;
Suzuki, Takashi;
Sato, Wataru;
Shigekawa, Takashi;
Osaki, Akihiko;
Saeki, Toshiaki;
Berezikov, Eugene;
Mano, Hiroyuki;
Inoue, Satoshi

Publication type:

Article

A Deep Sequencing Approach to Uncover the miRNOME in the Human Heart.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057800

By:

Leptidis, Stefanos;
el Azzouzi, Hamid;
Lok, Sjoukje I.;
de Weger, Roel;
Olieslagers, Serv;
Kisters, Natasja;
Silva, Gustavo J.;
Heymans, Stephane;
Cuppen, Edwin;
Berezikov, Eugene;
De Windt, Leon J.;
da Costa Martins, Paula

Publication type:

Article

Mesodermal Gene Expression in the Acoel <i>Isodiametra pulchra</i> Indicates a Low Number of Mesodermal Cell Types and the Endomesodermal Origin of the Gonads.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055499

By:

Chiodin, Marta;
Børve, Aina;
Berezikov, Eugene;
Ladurner, Peter;
Martinez, Pedro;
Hejnol, Andreas

Publication type:

Article

Neuronal Activity Regulates Hippocampal miRNA Expression.

Published in:

PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0025068

By:

Eacker, Stephen M.;
Keuss, Matthew J.;
Berezikov, Eugene;
Dawson, Valina L.;
Dawson, Ted M.

Publication type:

Article

Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits.

Published in:

Frontiers in Zoology, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12983-015-0106-0

By:

Arbore, Roberto;
Sekii, Kiyono;
Beisel, Christian;
Ladurner, Peter;
Berezikov, Eugene;
Schärer, Lukas

Publication type:

Article

Biological adhesion of the flatworm Macrostomum lignano relies on a duo-gland system and is mediated by a cell type-specific intermediate filament protein.

Published in:

Frontiers in Zoology, 2014, v. 11, n. 1, p. 1, doi. 10.1186/1742-9994-11-12

By:

Lengerer, Birgit;
Pjeta, Robert;
Wunderer, Julia;
Rodrigues, Marcelo;
Arbore, Roberto;
Schärer, Lukas;
Berezikov, Eugene;
Hess, Michael;
Pfaller, Kristian;
Egger, Bernhard;
Obwegeser, Sabrina;
Salvenmoser, Willi;
Ladurner, Peter

Publication type:

Article

Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3202-4

By:

Dueck, Anne;
Evers, Maurits;
Henz, Stefan R.;
Unger, Katharina;
Eichner, Norbert;
Merkl, Rainer;
Berezikov, Eugene;
Engelmann, Julia C.;
Weigel, Detlef;
Wenzl, Stephan;
Meister, Gunter

Publication type:

Article

Differential Impact of the HEN1 Homolog HENN-1 on 21U and 26G RNAs in the Germline of Caenorhabditis elegans.

Published in:

PLoS Genetics, 2012, v. 8, n. 7, p. 1, doi. 10.1371/journal.pgen.1002702

By:

Kamminga, Leonie M.;
Van Wolfswinkel, Josien C.;
Luteijn, Maartje J.;
Kaaij, Lucas J. T.;
Bagijn, Marloes P.;
Sapetschnig, Alexandra;
Miska, Eric A.;
Berezikov, Eugene;
Ketting, René F.

Publication type:

Article

Proof of principle for piggyBac-mediated transgenesis in the flatworm Macrostomum lignano.

Published in:

Genetics, 2021, v. 218, n. 3, p. 1, doi. 10.1093/genetics/iyab076

By:

Ustyantsev, Kirill;
Jakub Wudarski;
Sukhikh, Igor;
Reinoite, Filipa;
Mouton, Stijn;
Berezikov, Eugene

Publication type:

Article

Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.20607

By:

Grudniewska, Magda;
Mouton, Stijn;
Simanov, Daniil;
Beltman, Frank;
Grelling, Margriet;
de Mulder, Katrien;
Arindrarto, Wibowo;
Weissert, Philipp M.;
van der Elst, Stefan;
Berezikov, Eugene

Publication type:

Article

Camels and zebrafish, viruses and cancer: a microRNA update.

Published in:

Human Molecular Genetics, 2005, v. 14, n. 2, p. r183, doi. 10.1093/hmg/ddi271

By:

Berezikov, Eugene;
Plasterk, Ronald H.A.

Publication type:

Article