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Conserved water mediated recognition and the dynamics of active site Cys 331 and Tyr 411 in hydrated structure of human IMPDH-II.
Published in:
Journal of Molecular Recognition, 2011, v. 24, n. 1, p. 35, doi. 10.1002/jmr.1021
By:
- Bairagya, Hridoy R.;
- Mukhopadhyay, Bishnu P.;
- Bera, Asim K.
Publication type:
Article
Insight to structural subsite recognition in plant thiol protease-inhibitor complexes : Understanding the basis of differential inhibition and the role of water.
Published in:
BMC Structural Biology, 2001, v. 1, p. 4, doi. 10.1186/1472-6807-1-4
By:
- Bhattacharya, Suparna;
- Ghosh, Sreya;
- Chakraborty, Sibani;
- Bera, Asim K.;
- Mukhopadhayay, Bishnu P.;
- Dey, Indrani;
- Banerjee, Asok
Publication type:
Article
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23609-8
By:
- Hosseinzadeh, Parisa;
- Watson, Paris R.;
- Craven, Timothy W.;
- Li, Xinting;
- Rettie, Stephen;
- Pardo-Avila, Fátima;
- Bera, Asim K.;
- Mulligan, Vikram Khipple;
- Lu, Peilong;
- Ford, Alexander S.;
- Weitzner, Brian D.;
- Stewart, Lance J.;
- Moyer, Adam P.;
- Di Piazza, Maddalena;
- Whalen, Joshua G.;
- Greisen, Per Jr.;
- Christianson, David W.;
- Baker, David
Publication type:
Article
Design of multi-scale protein complexes by hierarchical building block fusion.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22276-z
By:
- Hsia, Yang;
- Mout, Rubul;
- Sheffler, William;
- Edman, Natasha I.;
- Vulovic, Ivan;
- Park, Young-Jun;
- Redler, Rachel L.;
- Bick, Matthew J.;
- Bera, Asim K.;
- Courbet, Alexis;
- Kang, Alex;
- Brunette, T. J.;
- Nattermann, Una;
- Tsai, Evelyn;
- Saleem, Ayesha;
- Chow, Cameron M.;
- Ekiert, Damian;
- Bhabha, Gira;
- Veesler, David;
- Baker, David
Publication type:
Article
Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel.
Published in:
Scientific Reports, 2017, p. 45277, doi. 10.1038/srep45277
By:
- Bera, Asim K;
- Aukema, Kelly G.;
- Elias, Mikael;
- Wackett, Lawrence P.
Publication type:
Article
Directing polymorph specific calcium carbonate formation with de novo protein templates.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43608-1
By:
- Davila-Hernandez, Fatima A.;
- Jin, Biao;
- Pyles, Harley;
- Zhang, Shuai;
- Wang, Zheming;
- Huddy, Timothy F.;
- Bera, Asim K.;
- Kang, Alex;
- Chen, Chun-Long;
- De Yoreo, James J.;
- Baker, David
Publication type:
Article
Green Synthesis of Substituted Anilines and Quinazolines from Isatoic Anhydride-8-amide.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50776-y
By:
- Gondi, Sudershan R.;
- Bera, Asim K.;
- Westover, Kenneth D.
Publication type:
Article
The nonreceptor tyrosine kinase SRMS inhibits autophagy and promotes tumor growth by phosphorylating the scaffolding protein FKBP51.
Published in:
PLoS Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1371/journal.pbio.3001281
By:
- Park, Jung Mi;
- Yang, Seung Wook;
- Zhuang, Wei;
- Bera, Asim K.;
- Liu, Yan;
- Gurbani, Deepak;
- von Hoyningen-Huene, Sergei J.;
- Sakurada, Sadie Miki;
- Gan, Haiyun;
- Pruett-Miller, Shondra M.;
- Westover, Kenneth D.;
- Potts, Malia B.
Publication type:
Article
GTP hydrolysis is modulated by Arg34 in the RASopathy‐associated KRAS<sup>P34R</sup>.
Published in:
Birth Defects Research, 2020, v. 112, n. 10, p. 708, doi. 10.1002/bdr2.1647
By:
- Bera, Asim K.;
- Lu, Jia;
- Lu, Chunya;
- Li, Lianbo;
- Gondi, Sudershan;
- Yan, Wei;
- Nelson, Andrew;
- Zhang, Goujun;
- Westover, Kenneth D.
Publication type:
Article
Conserved water-mediated H-bonding dynamics of catalytic Asn 175 in plant thiol protease.
Published in:
Journal of Biosciences, 2009, v. 34, n. 1, p. 27, doi. 10.1007/s12038-009-0006-6
By:
- NANDI, TAPAS K.;
- BAIRAGYA, HRIDOY R.;
- MUKHOPADHYAY, BISHNU P.;
- SEKAR, K.;
- SUKUL, DIPANKAR;
- BERA, ASIM K.
Publication type:
Article
Large-scale design and refinement of stable proteins using sequence-only models.
Published in:
PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0265020
By:
- Singer, Jedediah M.;
- Novotney, Scott;
- Strickland, Devin;
- Haddox, Hugh K.;
- Leiby, Nicholas;
- Rocklin, Gabriel J.;
- Chow, Cameron M.;
- Roy, Anindya;
- Bera, Asim K.;
- Motta, Francis C.;
- Cao, Longxing;
- Strauch, Eva-Maria;
- Chidyausiku, Tamuka M.;
- Ford, Alex;
- Ho, Ethan;
- Zaitzeff, Alexander;
- Mackenzie, Craig O.;
- Eramian, Hamed;
- DiMaio, Frank;
- Grigoryan, Gevorg
Publication type:
Article
Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis.
Published in:
PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0216979
By:
- Shi, Ke;
- Cho, Seunghee;
- Aukema, Kelly G.;
- Lee, Thomas;
- Bera, Asim K.;
- Seffernick, Jennifer L.;
- Wackett, Lawrence P.;
- Aihara, Hideki
Publication type:
Article
De novo design of monomeric helical bundles for pH‐controlled membrane lysis.
Published in:
Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 11, p. 1, doi. 10.1002/pro.4769
By:
- Goldbach, Nicolas;
- Benna, Issa;
- Wicky, Basile I. M.;
- Croft, Jacob T.;
- Carter, Lauren;
- Bera, Asim K.;
- Nguyen, Hannah;
- Kang, Alex;
- Sankaran, Banumathi;
- Yang, Erin C.;
- Lee, Kelly K.;
- Baker, David
Publication type:
Article

Found: 13