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Estimating between-country migration in pneumococcal populations.
- Published in:
- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 6, p. 1, doi. 10.1093/g3journal/jkae058
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- Article
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44584-2
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- Article
Correction: Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.
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- 2023
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- Publication type:
- Correction Notice
Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 19, p. 10375, doi. 10.1093/nar/gkad760
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- Article
Molecular Epidemiology of Group B Streptococcus Colonization in Egyptian Women.
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- Microorganisms, 2023, v. 11, n. 1, p. 38, doi. 10.3390/microorganisms11010038
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- Article
Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA.
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- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01147-2
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- Article
Pneumococcal genetic variability in age-dependent bacterial carriage.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.69244
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- Article
Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17600-6
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- Article
Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31858-4
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- Article
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814
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- Article
Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus pneumoniae Serotype 2.
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- Clinical Infectious Diseases, 2021, v. 73, n. 11, p. e3768, doi. 10.1093/cid/ciaa1720
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- Article
Persistent and Emerging Pneumococcal Carriage Serotypes in a Rural Gambian Community After 10 Years of Pneumococcal Conjugate Vaccine Pressure.
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- Clinical Infectious Diseases, 2021, v. 73, n. 11, p. e3825, doi. 10.1093/cid/ciaa856
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- Article
The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67113
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- Article
Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.
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- Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2209, doi. 10.1093/molbev/msab018
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- Article
Global genomic pathogen surveillance to inform vaccine strategies: a decade-long expedition in pneumococcal genomics.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00901-2
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- Article
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21749-5
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- Article
Lineage‐specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages.
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- Environmental Microbiology, 2020, v. 22, n. 12, p. 5058, doi. 10.1111/1462-2920.15111
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- Article
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
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- PLoS Biology, 2020, v. 18, n. 10, p. 1, doi. 10.1371/journal.pbio.3000878
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- Article
Producing polished prokaryotic pangenomes with the Panaroo pipeline.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02090-4
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- Article
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17327-w
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- Article
Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66214-3
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- Article
Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.
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- Clinical Infectious Diseases, 2020, v. 70, n. 7, p. 1294, doi. 10.1093/cid/ciz404
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- Article
Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928–2013): antimicrobial use/misuse selects for resistance and drives evolution.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6511-6
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- Article
Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Genome-wide epistasis and co-selection study using mutual information.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 18, p. e112, doi. 10.1093/nar/gkz656
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- Article
Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae.
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- Genes, 2019, v. 10, n. 9, p. 707, doi. 10.3390/genes10090707
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- Article
Fast hierarchical Bayesian analysis of population structure.
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- Nucleic Acids Research, 2019, v. 47, n. 11, p. 5539, doi. 10.1093/nar/gkz361
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- Article
Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.
- Published in:
- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00317
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- Article
pyseer: a comprehensive tool for microbial pangenome-wide association studies.
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- Bioinformatics, 2018, v. 34, n. 24, p. 4310, doi. 10.1093/bioinformatics/bty539
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- Article
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
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- Nucleic Acids Research, 2018, v. 46, n. 22, p. e134, doi. 10.1093/nar/gky783
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- Article
Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition.
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- Nucleic Acids Research, 2018, v. 46, n. 21, p. 11438, doi. 10.1093/nar/gky906
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- Article
A genomic infection control study for <em>Staphylococcus aureus</em> in two Ghanaian hospitals.
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- Infection & Drug Resistance, 2018, v. 11, p. 1757, doi. 10.2147/IDR.S167639
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- Article
Global Scale Dissemination of ST93: A Divergent <italic>Staphylococcus aureus</italic> Epidemic Lineage That Has Recently Emerged From Remote Northern Australia.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01453
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- Article
The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome.
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- PLoS Pathogens, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.ppat.1006966
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- Article
A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children.
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- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 10, p. 1, doi. 10.1371/journal.pntd.0005975
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- Article
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.
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- Molecular Biology & Evolution, 2017, v. 34, n. 10, p. 2537, doi. 10.1093/molbev/msx173
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- Article
Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1252-9
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- Article
Variants of AbGRI3 carrying the armA gene in extensively antibiotic-resistant Acinetobacter baumannii from Singapore.
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- 2017
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- Publication type:
- journal article
Association of Pneumococcal Protein Antigen Serology With Age and Antigenic Profile of Colonizing Isolates.
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- 2017
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- Publication type:
- journal article
Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data.
- Published in:
- Scientific Reports, 2017, p. 42808, doi. 10.1038/srep42808
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- Article
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
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- PLoS Genetics, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pgen.1006508
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- Article
Genome-wide association of functional traits linked with C ampylobacter jejuni survival from farm to fork.
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- Environmental Microbiology, 2017, v. 19, n. 1, p. 361, doi. 10.1111/1462-2920.13628
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- Article
Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000-2013.
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- 2016
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- Publication type:
- journal article
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes.
- Published in:
- Nature Communications, 2016, v. 7, n. 9, p. 12797, doi. 10.1038/ncomms12797
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- Publication type:
- Article
Comparative Genomics of Carriage and Disease Isolates of Streptococcus pneumoniae Serotype 22F Reveals Lineage-Specific Divergence and Niche Adaptation.
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- Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1243, doi. 10.1093/gbe/evw066
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- Article
Corrigendum: Climate induces seasonality in pneumococcal transmission.
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- Scientific Reports, 2016, p. 23307, doi. 10.1038/srep23307
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- Article
Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict.
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- PLoS Biology, 2016, v. 14, n. 3, p. 1, doi. 10.1371/journal.pbio.1002394
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- Article
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0274-3
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- Article
Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2234-5
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- Article
Climate induces seasonality in pneumococcal transmission.
- Published in:
- Scientific Reports, 2015, p. 11344, doi. 10.1038/srep11344
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- Publication type:
- Article