Works by Bentley, Stephen

Results: 156

Taming the next-gen beast.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 3, p. 161, doi. 10.1038/nrmicro2322

By:

Bentley, Stephen

Publication type:

Article

Population genomics of Streptococcus mitis in UK and Ireland bloodstream infection and infective endocarditis cases.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52120-z

By:

Kalizang'oma, Akuzike;
Richard, Damien;
Kwambana-Adams, Brenda;
Coelho, Juliana;
Broughton, Karen;
Pichon, Bruno;
Hopkins, Katie L.;
Chalker, Victoria;
Beleza, Sandra;
Bentley, Stephen D.;
Chaguza, Chrispin;
Heyderman, Robert S.

Publication type:

Article

Producing polished prokaryotic pangenomes with the Panaroo pipeline.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02090-4

By:

Tonkin-Hill, Gerry;
MacAlasdair, Neil;
Ruis, Christopher;
Weimann, Aaron;
Horesh, Gal;
Lees, John A.;
Gladstone, Rebecca A.;
Lo, Stephanie;
Beaudoin, Christopher;
Floto, R. Andres;
Frost, Simon D.W.;
Corander, Jukka;
Bentley, Stephen D.;
Parkhill, Julian

Publication type:

Article

Correction: Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.

Published in:

2023

By:

Wyres, Kelly L.;
van Tonder, Andries;
Lambertsen, Lotte M.;
Hakenbeck, Regine;
Parkhill, Julian;
Bentley, Stephen D.;
Brueggemann, Angela B.

Publication type:

Correction Notice

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-49

By:

Croucher, Nicholas J.;
Hanage, William P.;
Harris, Simon R.;
McGee, Lesley;
van der Linden, Mark;
de Lencastre, Herminia;
Sá-Leão, Raquel;
Jae-Hoon Song;
Kwan Soo Ko;
Beall, Bernard;
Klugman, Keith P.;
Parkhill, Julian;
Tomasz, Alexander;
Kristinsson, Karl G.;
Bentley, Stephen D.

Publication type:

Article

Sequencing the species pan-genome.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 4, p. 258, doi. 10.1038/nrmicro2123

By:

Bentley, Stephen

Publication type:

Article

Genomic 'valleys of death'.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 4, p. 260, doi. 10.1038/nrmicro1881

By:

Bentley, Stephen

Publication type:

Article

Bacterial therapeutics.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 3, p. 170, doi. 10.1038/nrmicro1633

By:

Bentley, Stephen;
Sebaihia, Mohammed

Publication type:

Article

The grapes of wrath.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 11, p. 806, doi. 10.1038/nrmicro1535

By:

Holden, Matthew;
Lindsay, Jodi;
Bentley, Stephen

Publication type:

Article

Animal, vegetable or mineral?

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 10, p. 725, doi. 10.1038/nrmicro1508

By:

Cerdeño-Tárraga, Ana M.;
Bentley, Stephen

Publication type:

Article

Where there's muck there's microbes.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 9, p. 646, doi. 10.1038/nrmicro1497

By:

Seth-Smith, Helena;
Bentley, Stephen

Publication type:

Article

Faecal matters.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 8, p. 572, doi. 10.1038/nrmicro1483

By:

Walker, Alan;
Cerdeño-Tárraga, Ana;
Bentley, Stephen

Publication type:

Article

Bacterial home from home.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 3, p. 168, doi. 10.1038/nrmicro1367

By:

Thomson, Nicholas;
Crossman, Lisa;
Bentley, Stephen

Publication type:

Article

Food for thought.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 12, p. 912, doi. 10.1038/nrmicro1292

By:

Holden, Matthew;
Rajandream, Marie-Adèle;
Bentley, Stephen

Publication type:

Article

Genome watch: Microbial mariners.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 10, p. 748, doi. 10.1038/nrmicro1262

By:

Holden, Matthew;
Thomson, Nicholas;
Bentley, Stephen

Publication type:

Article

Genome watch: Massive attack.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 8, p. 586, doi. 10.1038/nrmicro1212

By:

Thomson, Nicholas;
Cerdeño-Tárraga, Ana;
Bentley, Stephen

Publication type:

Article

Correction: Genome Watch: Enemies within.

Published in:

2005

By:

Bentley, Stephen;
Sebaihia, Mohammed;
Crossman, Lisa

Publication type:

Correction Notice

Genome watch: Enemies within.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 1, p. 8, doi. 10.1038/nrmicro1071

By:

Bentley, Stephen;
Sebaihia, Mohammed;
Crossman, Lisa

Publication type:

Article

Genome watch: Genomic pot pourri.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 12, p. 928, doi. 10.1038/nrmicro1051

By:

Bentley, Stephen;
Crossman, Lisa;
Cerdeño-Tárraga, Ana;
Parkhill, Julian

Publication type:

Article

Genome watch: Eukaryotes: not beyond compare.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 11, p. 856, doi. 10.1038/nrmicro1028

By:

Pain, Arnab;
Bentley, Stephen;
Parkhill, Julian

Publication type:

Article

RCandy: an R package for visualizing homologous recombinations in bacterial genomes.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814

By:

Chaguza, Chrispin;
Tonkin-Hill, Gerry;
Lo, Stephanie W;
Hadfield, James;
Croucher, Nicholas J;
Harris, Simon R;
Bentley, Stephen D

Publication type:

Article

Residual Variation Intolerance Score Detects Loci Under Selection in Neuroinvasive Listeria monocytogenes.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02702

By:

Ferwerda, Bart;
Maury, Mylène M.;
Brouwer, Mathijs C.;
Hafner, Lukas;
van der Ende, Arie;
Bentley, Stephen;
Lecuit, Marc;
van de Beek, Diederik

Publication type:

Article

The hexA gene of Erwinia carotovora encodes a LysR homologue and regulates motility and the expression of multiple virulence determinants.

Published in:

Molecular Microbiology, 1998, v. 28, n. 4, p. 705, doi. 10.1046/j.1365-2958.1998.00825.x

By:

Harris, Stephen J;
Shih, Yu-Ling;
Bentley, Stephen D;
Salmond, George P. C

Publication type:

Article

Description and Nomenclature of Neisseria meningitidis Capsule Locus.

Published in:

Emerging Infectious Diseases, 2013, v. 19, n. 4, p. 566, doi. 10.3201/eid1904.111799

By:

Harrison, Odile B.;
Claus, Heike;
Jiang, Ying;
Bennett, Julia S.;
Bratcher, Holly B.;
Jolley, Keith A.;
Corton, Craig;
Care, Rory;
Poolman, Jan T.;
Zollinger, Wendell D.;
Frasch, Carl E.;
Stephens, David S.;
Feavers, Ian;
Frosch, Matthias;
Parkhill, Julian;
Vogel, Ulrich;
Quail, Michael A.;
Bentley, Stephen D.;
Maiden, Martin C. J.

Publication type:

Article

Lineage-specific Virulence Determinants of Haemophilus influenzae Biogroup aegyptius.

Published in:

Emerging Infectious Diseases, 2012, v. 18, n. 3, p. 449, doi. 10.3201/eid1803.110728

By:

Strouts, Fiona R.;
Power, Peter;
Croucher, Nicholas J.;
Corton, Nicola;
van Tonder, Andries;
Quail, Michael A.;
Langford, Paul R.;
Hudson, Michael J.;
Parkhill, Julian;
Kroll, J. Simon;
Bentley, Stephen D.

Publication type:

Article

Detection of recombination events in bacterial genomes from large population samples.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr928

By:

Marttinen, Pekka;
Hanage, William P.;
Croucher, Nicholas J.;
Connor, Thomas R.;
Harris, Simon R.;
Bentley, Stephen D.;
Corander, Jukka

Publication type:

Article

A simple method for directional transcriptome sequencing using Illumina technology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 22, p. e148, doi. 10.1093/nar/gkp811

By:

Croucher, Nicholas J.;
Fookes, Maria C.;
Perkins, Timothy T.;
Turner, Daniel J.;
Marguerat, Samuel B.;
Keane, Thomas;
Quail, Michael A.;
He, Miao;
Assefa, Sammey;
Bähler, Jürg;
Kingsley, Robert A.;
Parkhill, Julian;
Bentley, Stephen D.;
Dougan, Gordon;
Thomson, Nicholas R.

Publication type:

Article

A genomic infection control study for <em>Staphylococcus aureus</em> in two Ghanaian hospitals.

Published in:

Infection & Drug Resistance, 2018, v. 11, p. 1757, doi. 10.2147/IDR.S167639

By:

Donkor, Eric S;
Jamrozy, Dorota;
Mills, Richael O;
Dankwah, Thomas;
Amoo, Philip K;
Egyir, Beverly;
Badoe, Ebenezer V;
Twasam, Joana;
Bentley, Stephen D

Publication type:

Article

Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1252-9

By:

Harkins, Catriona P.;
Pichon, Bruno;
Doumith, Michel;
Parkhill, Julian;
Westh, Henrik;
Tomasz, Alexander;
de Lencastre, Herminia;
Bentley, Stephen D.;
Kearns, Angela M.;
Holden, Matthew T. G.

Publication type:

Article

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.

Published in:

PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552

By:

Bentley, Stephen D.;
Comas, Iñaki;
Bryant, Josephine M.;
Walker, Danielle;
Smith, Noel H.;
Harris, Simon R.;
Thurston, Scott;
Gagneux, Sebastien;
Wood, Jonathan;
Antonio, Martin;
Quail, Michael A.;
Gehre, Florian;
Adegbola, Richard A.;
Parkhill, Julian;
de Jong, Bouke C.

Publication type:

Article

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.

Published in:

PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552

By:

Bentley, Stephen D.;
Comas, Iñaki;
Bryant, Josephine M.;
Walker, Danielle;
Smith, Noel H.;
Harris, Simon R.;
Thurston, Scott;
Gagneux, Sebastien;
Wood, Jonathan;
Antonio, Martin;
Quail, Michael A.;
Gehre, Florian;
Adegbola, Richard A.;
Parkhill, Julian;
Jong, Bouke C. De

Publication type:

Article

Endocarditis Caused by Nontypeable Streptococcus pneumoniae.

Published in:

Clinical Infectious Diseases, 2022, v. 75, n. 4, p. 719, doi. 10.1093/cid/ciac079

By:

Henriet, Stefanie S V;
Langereis, Jeroen D;
Lo, Stephanie W;
Bentley, Stephen;
Mesman, Rob J;
Fejzic, Zina;
Niftrik, Laura van;
Sorge, Nina M van;
Wertheim, Heiman F L;
Jonge, Marien I de;
Cremers, Amelieke J H

Publication type:

Article

Persistent and Emerging Pneumococcal Carriage Serotypes in a Rural Gambian Community After 10 Years of Pneumococcal Conjugate Vaccine Pressure.

Published in:

Clinical Infectious Diseases, 2021, v. 73, n. 11, p. e3825, doi. 10.1093/cid/ciaa856

By:

Usuf, Effua;
Bottomley, Christian;
Gladstone, Rebecca;
Bojang, Ebrima;
Jawneh, Kaddijatou;
Cox, Isatou;
Jallow, Edrissa;
Bojang, Abdoulie;
Greenwood, Brian;
Adegbola, Richard A;
Bentley, Stephen D;
Hill, Philip C;
Roca, Anna

Publication type:

Article

Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus pneumoniae Serotype 2.

Published in:

Clinical Infectious Diseases, 2021, v. 73, n. 11, p. e3768, doi. 10.1093/cid/ciaa1720

By:

Dagan, Ron;
Ben-Shimol, Shalom;
Benisty, Rachel;
Regev-Yochay, Gili;
Lo, Stephanie W;
Bentley, Stephen D;
Hawkins, Paulina A;
McGee, Lesley;
Ron, Merav;
Givon-Lavi, Noga;
Valinsky, Lea;
Rokney, Assaf

Publication type:

Article

Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.

Published in:

Clinical Infectious Diseases, 2020, v. 70, n. 7, p. 1294, doi. 10.1093/cid/ciz404

By:

Chaguza, Chrispin;
Heinsbroek, Ellen;
Gladstone, Rebecca A;
Tafatatha, Terence;
Alaerts, Maaike;
Peno, Chikondi;
Cornick, Jennifer E;
Musicha, Patrick;
Bar-Zeev, Naor;
Kamng'ona, Arox;
Kadioglu, Aras;
McGee, Lesley;
Hanage, William P;
Breiman, Robert F;
Heyderman, Robert S;
French, Neil;
Everett, Dean B;
Bentley, Stephen D

Publication type:

Article

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Published in:

Nature Genetics, 2003, v. 35, n. 1, p. 32, doi. 10.1038/ng1227

By:

Parkhill, Julian;
Sebaihia, Mohammed;
Preston, Andrew;
Murphy, Lee D.;
Thomson, Nicholas;
Harris, David E.;
Holden, Matthew T. G.;
Churcher, Carol M.;
Bentley, Stephen D.;
Mungall, Karen L.;
Cerdeño-Tárraga, Ana M.;
Temple, Louise;
James, Keith;
Harris, Barbara;
Quail, Michael A.;
Achtman, Mark;
Atkin, Rebecca;
Baker, Steven;
Basham, David;
Bason, Nathalie

Publication type:

Article

Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants.

Published in:

BMC Microbiology, 2012, v. 12, n. 1, p. 273, doi. 10.1186/1471-2180-12-273

By:

Power, Peter M.;
Bentley, Stephen D.;
Parkhill, Julian;
Moxon, E. Richard;
Hood, Derek W.

Publication type:

Article

Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor.

Published in:

BMC Microbiology, 2004, v. 4, p. 1

By:

Studholme, David J.;
Bentley, Stephen D.;
Kormanec, Jan

Publication type:

Article

New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor.

Published in:

BMC Microbiology, 2003, v. 3, p. 1

By:

Yeats, Corin;
Bentley, Stephen;
Bateman, Alex

Publication type:

Article

Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928–2013): antimicrobial use/misuse selects for resistance and drives evolution.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6511-6

By:

Golparian, Daniel;
Harris, Simon R.;
Sánchez-Busó, Leonor;
Hoffmann, Steen;
Shafer, William M.;
Bentley, Stephen D.;
Jensen, Jörgen S.;
Unemo, Magnus

Publication type:

Article

Selective and Genetic Constraints on Pneumococcal Serotype Switching.

Published in:

PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005095

By:

Croucher, Nicholas J.;
Kagedan, Lisa;
Thompson, Claudette M.;
Parkhill, Julian;
Bentley, Stephen D.;
Finkelstein, Jonathan A.;
Lipsitch, Marc;
Hanage, William P.

Publication type:

Article

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes.

Published in:

PLoS Genetics, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pgen.1004547

By:

Chewapreecha, Claire;
Marttinen, Pekka;
Croucher, Nicholas J.;
Salter, Susannah J.;
Harris, Simon R.;
Mather, Alison E.;
Hanage, William P.;
Goldblatt, David;
Nosten, Francois H.;
Turner, Claudia;
Turner, Paul;
Bentley, Stephen D.;
Parkhill, Julian

Publication type:

Article

Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution.

Published in:

PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004300

By:

Mostowy, Rafal;
Croucher, Nicholas J.;
Hanage, William P.;
Harris, Simon R.;
Bentley, Stephen;
Fraser, Christophe

Publication type:

Article

Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection.

Published in:

PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003868

By:

Croucher, Nicholas J.;
Mitchell, Andrea M.;
Gould, Katherine A.;
Inverarity, Donald;
Barquist, Lars;
Feltwell, Theresa;
Fookes, Maria C.;
Harris, Simon R.;
Dordel, Janina;
Salter, Susannah J.;
Browall, Sarah;
Zemlickova, Helena;
Parkhill, Julian;
Normark, Staffan;
Henriques-Normark, Birgitta;
Hinds, Jason;
Mitchell, Tim J.;
Bentley, Stephen D.

Publication type:

Article

Meningococcal Genetic Variation Mechanisms Viewed through Comparative Analysis of Serogroup C Strain FAM18.

Published in:

PLoS Genetics, 2007, v. 3, n. 2, p. 230, doi. 10.1371/journal.pgen.0030023

By:

Bentley, Stephen D.;
Vernikos, George S.;
Snyder, Lori A. S.;
Churcher, Carol;
Arrowsmith, Claire;
Chillingworth, Tracey;
Cronin, Ann;
Davis, Paul H.;
Holroyd, Nancy E.;
Jagels, Kay;
Maddison, Mark;
Moule, Sharon;
Rabbinowitsch, Ester;
Sharp, Sarah;
Unwin, Louise;
Whitehead, Sally;
Quail, Michael A.;
Achtman, Mark;
Barrell, Bart;
Saunders, Nigel J.

Publication type:

Article

Genetic Analysis of the Capsular Biosynthetic<br /> Locus from All 90 Pneumococcal Serotypes.

Published in:

PLoS Genetics, 2006, v. 2, n. 3, p. e31, doi. 10.1371/journal.pgen.0020031

By:

Bentley, Stephen D.;
Aanensen, David M.;
Mavroidi, Angeliki;
Saunders, David;
Rabbinowitsch, Ester;
Collins, Matthew;
Donohoe, Kathy;
Harris, David;
Murphy, Lee;
Quail, Michael A.;
Samuel, Gabby;
Skovsted, Ian C.;
Kaltoft, Margit Staum;
Barrell, Bart;
Reeves, Peter R.;
Parkhill, Julian;
Spratt, Brian G.

Publication type:

Article

Agar-Dilution Is Comparable to Broth Dilution for MIC Determination in Streptococcus agalactiae.

Published in:

Antibiotics (2079-6382), 2025, v. 14, n. 2, p. 156, doi. 10.3390/antibiotics14020156

By:

Portal, Edward A. R.;
Farley, Caitlin;
Iannetelli, Teresa;
Coelho, Juliana;
Efstratiou, Androulla;
Bentley, Stephen D.;
Chalker, Victoria J.;
Spiller, Owen B.

Publication type:

Article

Long-Term Co-Circulation of Host-Specialist and Host-Generalist Lineages of Group B Streptococcus in Brazilian Dairy Cattle with Heterogeneous Antimicrobial Resistance Profiles.

Published in:

Antibiotics (2079-6382), 2024, v. 13, n. 5, p. 389, doi. 10.3390/antibiotics13050389

By:

Oliveira, Laura Maria Andrade de;
Simões, Leandro Correia;
Crestani, Chiara;
Costa, Natália Silva;
Pantoja, José Carlos de Figueiredo;
Rabello, Renata Fernandes;
Teixeira, Lucia Martins;
Khan, Uzma Basit;
Bentley, Stephen;
Jamrozy, Dorota;
Pinto, Tatiana de Castro Abreu;
Zadoks, Ruth N.

Publication type:

Article

Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17600-6

By:

Cleary, David W.;
Jones, Jessica;
Gladstone, Rebecca A.;
Osman, Karen L.;
Devine, Vanessa T.;
Jefferies, Johanna M.;
Bentley, Stephen D.;
Faust, Saul N.;
Clarke, Stuart C.

Publication type:

Article

Lineage‐specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages.

Published in:

Environmental Microbiology, 2020, v. 22, n. 12, p. 5058, doi. 10.1111/1462-2920.15111

By:

Zamudio, Roxana;
Haigh, Richard D.;
Ralph, Joseph D.;
De Ste Croix, Megan;
Tasara, Taurai;
Zurfluh, Katrin;
Kwun, Min Jung;
Millard, Andrew D.;
Bentley, Stephen D.;
Croucher, Nicholas J.;
Stephan, Roger;
Oggioni, Marco R.

Publication type:

Article