Works by Bentley, Stephen

Results: 154

Agar-Dilution Is Comparable to Broth Dilution for MIC Determination in Streptococcus agalactiae.
Published in:
Antibiotics (2079-6382), 2025, v. 14, n. 2, p. 156, doi. 10.3390/antibiotics14020156
By:
- Portal, Edward A. R.;
- Farley, Caitlin;
- Iannetelli, Teresa;
- Coelho, Juliana;
- Efstratiou, Androulla;
- Bentley, Stephen D.;
- Chalker, Victoria J.;
- Spiller, Owen B.
Publication type:
Article
Residual Variation Intolerance Score Detects Loci Under Selection in Neuroinvasive Listeria monocytogenes.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02702
By:
- Ferwerda, Bart;
- Maury, Mylène M.;
- Brouwer, Mathijs C.;
- Hafner, Lukas;
- van der Ende, Arie;
- Bentley, Stephen;
- Lecuit, Marc;
- van de Beek, Diederik
Publication type:
Article
Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.
Published in:
Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00317
By:
- van Tonder, Andries J.;
- Bray, James E.;
- Jolley, Keith A.;
- Jansen van Rensburg, Melissa;
- Quirk, Sigríður J.;
- Haraldsson, Gunnsteinn;
- Maiden, Martin C. J.;
- Bentley, Stephen D.;
- Haraldsson, Ásgeir;
- Erlendsdóttir, Helga;
- Kristinsson, Karl G.;
- Brueggemann, Angela B.
Publication type:
Article
Global Scale Dissemination of ST93: A Divergent <italic>Staphylococcus aureus</italic> Epidemic Lineage That Has Recently Emerged From Remote Northern Australia.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01453
By:
- van Hal, Sebastiaan J.;
- Steinig, Eike J.;
- Andersson, Patiyan;
- Holden, Matthew T. G.;
- Harris, Simon R.;
- Nimmo, Graeme R.;
- Williamson, Deborah A.;
- Heffernan, Helen;
- Ritchie, S. R.;
- Kearns, Angela M.;
- Ellington, Matthew J.;
- Dickson, Elizabeth;
- de Lencastre, Herminia;
- Coombs, Geoffrey W.;
- Bentley, Stephen D.;
- Parkhill, Julian;
- Holt, Deborah C.;
- Giffard, Phillip M.;
- Tong, Steven Y. C.
Publication type:
Article
Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1252-9
By:
- Harkins, Catriona P.;
- Pichon, Bruno;
- Doumith, Michel;
- Parkhill, Julian;
- Westh, Henrik;
- Tomasz, Alexander;
- de Lencastre, Herminia;
- Bentley, Stephen D.;
- Kearns, Angela M.;
- Holden, Matthew T. G.
Publication type:
Article
A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children.
Published in:
PLoS Neglected Tropical Diseases, 2017, v. 11, n. 10, p. 1, doi. 10.1371/journal.pntd.0005975
By:
- Salter, Susannah J.;
- Turner, Claudia;
- Watthanaworawit, Wanitda;
- de Goffau, Marcus C.;
- Wagner, Josef;
- Parkhill, Julian;
- Bentley, Stephen D.;
- Goldblatt, David;
- Nosten, Francois;
- Turner, Paul
Publication type:
Article
Genomic and functional determinants of host spectrum in Group B Streptococcus.
Published in:
PLoS Pathogens, 2024, v. 20, n. 8, p. 1, doi. 10.1371/journal.ppat.1012400
By:
- Crestani, Chiara;
- Forde, Taya L.;
- Bell, John;
- Lycett, Samantha J.;
- Oliveira, Laura M. A.;
- Pinto, Tatiana C. A.;
- Cobo-Ángel, Claudia G.;
- Ceballos-Márquez, Alejandro;
- Phuoc, Nguyen N.;
- Sirimanapong, Wanna;
- Chen, Swaine L.;
- Jamrozy, Dorota;
- Bentley, Stephen D.;
- Fontaine, Michael;
- Zadoks, Ruth N.
Publication type:
Article
Group B Streptococcus Sequence Type 103 as Human and Bovine Pathogen, Brazil.
Published in:
Emerging Infectious Diseases, 2024, v. 30, n. 8, p. 1697, doi. 10.3201/eid3008.231575
By:
- Oliveira, Laura M. A.;
- Simões, Leandro C.;
- Crestani, Chiara;
- Costa, Natália S.;
- Pantoja, José Carlos F.;
- Rabello, Renata F.;
- Fracalanzza, Sérgio E. L.;
- Teixeira, Lucia M.;
- Khan, Uzma B.;
- Jamrozy, Dorota;
- Bentley, Stephen;
- Pinto, Tatiana C. A.;
- Zadoks, Ruth N.
Publication type:
Article
Population genomics of Streptococcus mitis in UK and Ireland bloodstream infection and infective endocarditis cases.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52120-z
By:
- Kalizang'oma, Akuzike;
- Richard, Damien;
- Kwambana-Adams, Brenda;
- Coelho, Juliana;
- Broughton, Karen;
- Pichon, Bruno;
- Hopkins, Katie L.;
- Chalker, Victoria;
- Beleza, Sandra;
- Bentley, Stephen D.;
- Chaguza, Chrispin;
- Heyderman, Robert S.
Publication type:
Article
Estimating between-country migration in pneumococcal populations.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 6, p. 1, doi. 10.1093/g3journal/jkae058
By:
- Belman, Sophie;
- Pesonen, Henri;
- Croucher, Nicholas J;
- Bentley, Stephen D;
- Corander, Jukka
Publication type:
Article
Producing polished prokaryotic pangenomes with the Panaroo pipeline.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02090-4
By:
- Tonkin-Hill, Gerry;
- MacAlasdair, Neil;
- Ruis, Christopher;
- Weimann, Aaron;
- Horesh, Gal;
- Lees, John A.;
- Gladstone, Rebecca A.;
- Lo, Stephanie;
- Beaudoin, Christopher;
- Floto, R. Andres;
- Frost, Simon D.W.;
- Corander, Jukka;
- Bentley, Stephen D.;
- Parkhill, Julian
Publication type:
Article
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology.
Published in:
PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002824
By:
- Köser, Claudio U.;
- Ellington, Matthew J.;
- Cartwright, Edward J. P.;
- Gillespie, Stephen H.;
- Brown, Nicholas M.;
- Farrington, Mark;
- Holden, Matthew T. G.;
- Dougan, Gordon;
- Bentley, Stephen D.;
- Parkhill, Julian;
- Peacock, Sharon J.
Publication type:
Article
A High-Resolution View of Genome-Wide Pneumococcal Transformation.
Published in:
PLoS Pathogens, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.ppat.1002745
By:
- Croucher, Nicholas J.;
- Harris, Simon R.;
- Barquist, Lars;
- Parkhill, Julian;
- Bentley, Stephen D.
Publication type:
Article
The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones.
Published in:
PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002129
By:
- Castillo-Ramirez, Santiago;
- Harris, Simon R.;
- Holden, Matthew T. G.;
- Miao He;
- Parkhill, Julian;
- Bentley, Stephen D.;
- Feil, Edward J.
Publication type:
Article
Genomic 'valleys of death'.
Published in:
Nature Reviews Microbiology, 2008, v. 6, n. 4, p. 260, doi. 10.1038/nrmicro1881
By:
- Bentley, Stephen
Publication type:
Article
Bacterial therapeutics.
Published in:
Nature Reviews Microbiology, 2007, v. 5, n. 3, p. 170, doi. 10.1038/nrmicro1633
By:
- Bentley, Stephen;
- Sebaihia, Mohammed
Publication type:
Article
The grapes of wrath.
Published in:
Nature Reviews Microbiology, 2006, v. 4, n. 11, p. 806, doi. 10.1038/nrmicro1535
By:
- Holden, Matthew;
- Lindsay, Jodi;
- Bentley, Stephen
Publication type:
Article
Animal, vegetable or mineral?
Published in:
Nature Reviews Microbiology, 2006, v. 4, n. 10, p. 725, doi. 10.1038/nrmicro1508
By:
- Cerdeño-Tárraga, Ana M.;
- Bentley, Stephen
Publication type:
Article
Where there's muck there's microbes.
Published in:
Nature Reviews Microbiology, 2006, v. 4, n. 9, p. 646, doi. 10.1038/nrmicro1497
By:
- Seth-Smith, Helena;
- Bentley, Stephen
Publication type:
Article
Faecal matters.
Published in:
Nature Reviews Microbiology, 2006, v. 4, n. 8, p. 572, doi. 10.1038/nrmicro1483
By:
- Walker, Alan;
- Cerdeño-Tárraga, Ana;
- Bentley, Stephen
Publication type:
Article
Bacterial home from home.
Published in:
Nature Reviews Microbiology, 2006, v. 4, n. 3, p. 168, doi. 10.1038/nrmicro1367
By:
- Thomson, Nicholas;
- Crossman, Lisa;
- Bentley, Stephen
Publication type:
Article
Food for thought.
Published in:
Nature Reviews Microbiology, 2005, v. 3, n. 12, p. 912, doi. 10.1038/nrmicro1292
By:
- Holden, Matthew;
- Rajandream, Marie-Adèle;
- Bentley, Stephen
Publication type:
Article
Genome watch: Microbial mariners.
Published in:
Nature Reviews Microbiology, 2005, v. 3, n. 10, p. 748, doi. 10.1038/nrmicro1262
By:
- Holden, Matthew;
- Thomson, Nicholas;
- Bentley, Stephen
Publication type:
Article
Genome watch: Massive attack.
Published in:
Nature Reviews Microbiology, 2005, v. 3, n. 8, p. 586, doi. 10.1038/nrmicro1212
By:
- Thomson, Nicholas;
- Cerdeño-Tárraga, Ana;
- Bentley, Stephen
Publication type:
Article
Correction: Genome Watch: Enemies within.
Published in:
2005
By:
- Bentley, Stephen;
- Sebaihia, Mohammed;
- Crossman, Lisa
Publication type:
Correction Notice
Genome watch: Enemies within.
Published in:
Nature Reviews Microbiology, 2005, v. 3, n. 1, p. 8, doi. 10.1038/nrmicro1071
By:
- Bentley, Stephen;
- Sebaihia, Mohammed;
- Crossman, Lisa
Publication type:
Article
Genome watch: Genomic pot pourri.
Published in:
Nature Reviews Microbiology, 2004, v. 2, n. 12, p. 928, doi. 10.1038/nrmicro1051
By:
- Bentley, Stephen;
- Crossman, Lisa;
- Cerdeño-Tárraga, Ana;
- Parkhill, Julian
Publication type:
Article
Genome watch: Eukaryotes: not beyond compare.
Published in:
Nature Reviews Microbiology, 2004, v. 2, n. 11, p. 856, doi. 10.1038/nrmicro1028
By:
- Pain, Arnab;
- Bentley, Stephen;
- Parkhill, Julian
Publication type:
Article
Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus haemolyticus in European hospitals.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2014, v. 69, n. 11, p. 2920, doi. 10.1093/jac/dku271
By:
- Cavanagh, Jorunn Pauline;
- Hjerde, Erik;
- Holden, Matthew T. G.;
- Kahlke, Tim;
- Klingenberg, Claus;
- Flægstad, Trond;
- Parkhill, Julian;
- Bentley, Stephen D.;
- Sollid, Johanna U. Ericson
Publication type:
Article
Rapid single-colony whole-genome sequencing of bacterial pathogens.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2014, v. 69, n. 5, p. 1275, doi. 10.1093/jac/dkt494
By:
- Köser, Claudio U.;
- Fraser, Louise J.;
- Ioannou, Avgousta;
- Becq, Jennifer;
- Ellington, Matthew J.;
- Holden, Matthew T. G.;
- Reuter, Sandra;
- Török, M. Estée;
- Bentley, Stephen D.;
- Parkhill, Julian;
- Gormley, Niall A.;
- Smith, Geoffrey P.;
- Peacock, Sharon J.
Publication type:
Article
In vivo evolution of antimicrobial resistance in a series of Staphylococcus aureus patient isolates: the entire picture or a cautionary tale?
Published in:
2014
By:
- van Hal, Sebastiaan J;
- Steen, Jason A;
- Espedido, Björn A;
- Grimmond, Sean M;
- Cooper, Matthew A;
- Holden, Matthew T G;
- Bentley, Stephen D;
- Gosbell, Iain B;
- Jensen, Slade O
Publication type:
journal article
Genomic identification of a novel co-trimoxazole resistance genotype and its prevalence amongst Streptococcus pneumoniae in Malawi.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2014, v. 69, n. 2, p. 368, doi. 10.1093/jac/dkt384
By:
- Cornick, Jennifer E.;
- Harris, Simon R.;
- Parry, Christopher M.;
- Moore, Michael J.;
- Jassi, Chikondi;
- Kamng'ona, Arox;
- Kulohoma, Benard;
- Heyderman, Robert S.;
- Bentley, Stephen D.;
- Everett, Dean B.
Publication type:
Article
In vivo evolution of antimicrobial resistance in a series of Staphylococcus aureus patient isolates: the entire picture or a cautionary tale?
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2014, v. 69, n. 2, p. 363, doi. 10.1093/jac/dkt354
By:
- van Hal, Sebastiaan J.;
- Steen, Jason A.;
- Espedido, Björn A.;
- Grimmond, Sean M.;
- Cooper, Matthew A.;
- Holden, Matthew T. G.;
- Bentley, Stephen D.;
- Gosbell, Iain B.;
- Jensen, Slade O.
Publication type:
Article
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Published in:
Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814
By:
- Chaguza, Chrispin;
- Tonkin-Hill, Gerry;
- Lo, Stephanie W;
- Hadfield, James;
- Croucher, Nicholas J;
- Harris, Simon R;
- Bentley, Stephen D
Publication type:
Article
pyseer: a comprehensive tool for microbial pangenome-wide association studies.
Published in:
Bioinformatics, 2018, v. 34, n. 24, p. 4310, doi. 10.1093/bioinformatics/bty539
By:
- Lees, John A;
- Weiser, Jeffrey N;
- Galardini, Marco;
- Bentley, Stephen D;
- Corander, Jukka
Publication type:
Article
2618. Determination of the Chemical Structure of a Novel Pneumococcal Serotype, 39X.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S911, doi. 10.1093/ofid/ofz360.2296
By:
- Ganaie, Feroze;
- Saad, Jamil;
- McGee, Lesley;
- Tonder, Andries van;
- Bentley, Stephen;
- Gladstone, Rebecca;
- Turner, Paul;
- Keenan, Jeremy;
- Breiman, Robert;
- Nahm, Moon H
Publication type:
Article
Pneumococcal genetic variability in age-dependent bacterial carriage.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.69244
By:
- Kremer, Philip H. C.;
- Ferwerda, Bart;
- Bootsma, Hester J.;
- Rots, Nienke Y.;
- Wijmenga-Monsuur, Alienke J.;
- Sanders, Elisabeth A. M.;
- Trzciński, Krzysztof;
- Wyllie, Anne L.;
- Turner, Paul;
- van der Ende, Arie;
- Brouwer, Matthijs C.;
- Bentley, Stephen D.;
- van de Beek, Diederik;
- Lees, John A.
Publication type:
Article
Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31858-4
By:
- Chaguza, Chrispin;
- Jamrozy, Dorota;
- Bijlsma, Merijn W.;
- Kuijpers, Taco W.;
- van de Beek, Diederik;
- van der Ende, Arie;
- Bentley, Stephen D.
Publication type:
Article
Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae.
Published in:
Genes, 2019, v. 10, n. 9, p. 707, doi. 10.3390/genes10090707
By:
- Kwun, Min Jung;
- Oggioni, Marco R.;
- Bentley, Stephen D.;
- Fraser, Christophe;
- Croucher, Nicholas J.
Publication type:
Article
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
Published in:
Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0274-3
By:
- Hsiao-Han Chang;
- Dordel, Janina;
- Donker, Tjibbe;
- Worby, Colin J.;
- Feil, Edward J.;
- Hanage, William P.;
- Bentley, Stephen D.;
- Huang, Susan S.;
- Lipsitch, Marc
Publication type:
Article
Comparative Genomics of Carriage and Disease Isolates of Streptococcus pneumoniae Serotype 22F Reveals Lineage-Specific Divergence and Niche Adaptation.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1243, doi. 10.1093/gbe/evw066
By:
- Cleary, David W.;
- Devine, Vanessa T.;
- Jefferies, Johanna M.C.;
- Webb, Jeremy S.;
- Bentley, Stephen D.;
- Gladstone, Rebecca A.;
- Faust, Saul N.;
- Clarke, Stuart C.
Publication type:
Article
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape.
Published in:
Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1589, doi. 10.1093/gbe/evu120
By:
- Croucher, Nicholas J.;
- Chewapreecha, Claire;
- Hanage, William P.;
- Harris, Simon R.;
- McGee, Lesley;
- van der Linden, Mark;
- Song, Jae-Hoon;
- Ko, Kwan Soo;
- de Lencastre, Herminia;
- Turner, Claudia;
- Yang, Fan;
- Sá-Leão, Raquel;
- Beall, Bernard;
- Klugman, Keith P.;
- Parkhill, Julian;
- Turner, Paul;
- Bentley, Stephen D.
Publication type:
Article
A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin.
Published in:
Genome Biology & Evolution, 2011, v. 3, p. 881, doi. 10.1093/gbe/evr078
By:
- Holt, Deborah C.;
- Holden, Matthew T.G.;
- Tong, Steven Y.C.;
- Castillo-Ramirez, Santiago;
- Clarke, Louise;
- Quail, Michael A.;
- Currie, Bart J.;
- Parkhill, Julian;
- Bentley, Stephen D.;
- Feil, Edward J.;
- Giffard, Philip M.
Publication type:
Article
Comparative Whole Genome Sequence Analysis of the Carcinogenic Bacterial Model Pathogen Helicobacter felis.
Published in:
Genome Biology & Evolution, 2011, v. 3, p. 302, doi. 10.1093/gbe/evr022
By:
- Arnold, Isabelle C.;
- Zigova, Zuzana;
- Holden, Matthew;
- Lawley, Trevor D.;
- Rad, Roland;
- Dougan, Gordon Dougan;
- Falkow, Stanley;
- Bentley, Stephen D.;
- Müller, Anne
Publication type:
Article
Association of Pneumococcal Protein Antigen Serology With Age and Antigenic Profile of Colonizing Isolates.
Published in:
2017
By:
- Azarian, Taj;
- Grant, Lindsay R.;
- Georgieva, Maria;
- Hammitt, Laura L.;
- Reid, Raymond;
- Bentley, Stephen D.;
- Goldblatt, David;
- Santosham, Mathuran;
- Weatherholtz, Robert;
- Burbidge, Paula;
- Goklish, Novalene;
- Thompson, Claudette M.;
- Hanage, William P.;
- O’Brien, Kate L.;
- Lipsitch, Marc;
- O'Brien, Kate L
Publication type:
journal article
Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000-2013.
Published in:
2016
By:
- Grad, Yonatan H.;
- Harris, Simon R.;
- Kirkcaldy, Robert D.;
- Green, Anna G.;
- Marks, Debora S.;
- Bentley, Stephen D.;
- Trees, David;
- Lipsitch, Marc
Publication type:
journal article
Determinants of Invasiveness Beneath the Capsule of the Pneumococcus.
Published in:
Journal of Infectious Diseases, 2014, v. 209, n. 3, p. 321, doi. 10.1093/infdis/jit483
By:
- Klugman, Keith P.;
- Bentley, Stephen D.;
- McGee, Lesley
Publication type:
Article
Pneumococcal Capsular Switching: A Historical Perspective.
Published in:
Journal of Infectious Diseases, 2013, v. 207, n. 3, p. 439, doi. 10.1093/infdis/jis703
By:
- Wyres, Kelly L.;
- Lambertsen, Lotte M.;
- Croucher, Nicholas J.;
- McGee, Lesley;
- von Gottberg, Anne;
- Liñares, Josefina;
- Jacobs, Michael R.;
- Kristinsson, Karl G.;
- Beall, Bernard W.;
- Klugman, Keith P.;
- Parkhill, Julian;
- Hakenbeck, Regine;
- Bentley, Stephen D.;
- Brueggemann, Angela B.
Publication type:
Article
Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2234-5
By:
- Bryant, Josephine M.;
- Thibault, Virginie C.;
- Smith, David G. E.;
- McLuckie, Joyce;
- Heron, Ian;
- Sevilla, Iker A.;
- Biet, Franck;
- Harris, Simon R.;
- Maskell, Duncan J.;
- Bentley, Stephen D.;
- Parkhill, Julian;
- Stevenson, Karen
Publication type:
Article
Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1599-9
By:
- Steinig, Eike J.;
- Andersson, Patiyan;
- Harris, Simon R.;
- Sarovich, Derek S.;
- Manoharan, Anand;
- Coupland, Paul;
- Holden, Matthew T. G.;
- Parkhill, Julian;
- Bentley, Stephen D.;
- Robinson, D. Ashley;
- Tong, Steven Y. C.
Publication type:
Article