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Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
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- PLoS Biology, 2020, v. 18, n. 10, p. 1, doi. 10.1371/journal.pbio.3000878
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- Article
Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.
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- Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2209, doi. 10.1093/molbev/msab018
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- Article
Pneumococcal genetic variability in age-dependent bacterial carriage.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.69244
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- Article
Comparative Genomics of Carriage and Disease Isolates of Streptococcus pneumoniae Serotype 22F Reveals Lineage-Specific Divergence and Niche Adaptation.
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- Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1243, doi. 10.1093/gbe/evw066
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- Article
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape.
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- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1589, doi. 10.1093/gbe/evu120
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- Article
A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin.
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- Genome Biology & Evolution, 2011, v. 3, p. 881, doi. 10.1093/gbe/evr078
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- Article
Comparative Whole Genome Sequence Analysis of the Carcinogenic Bacterial Model Pathogen Helicobacter felis.
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- Genome Biology & Evolution, 2011, v. 3, p. 302, doi. 10.1093/gbe/evr022
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- Article
Hsp70/J-protein machinery from Glossina morsitans morsitans, vector of African trypanosomiasis.
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- PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0183858
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Screening for Small Molecule Modulators of Trypanosoma brucei Hsp70 Chaperone Activity Based upon Alcyonarian Coral-Derived Natural Products.
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- Marine Drugs, 2020, v. 18, n. 2, p. 81, doi. 10.3390/md18020081
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- Article
Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1599-9
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- Article
Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-710
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- Article
Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-500
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- Article
Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens.
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- BMC Genomics, 2012, v. 13, n. 1, p. 545, doi. 10.1186/1471-2164-13-545
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- Article
Identification, variation and transcription of pneumococcal repeat sequences.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-120
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- Article
Identification, variation and transcription of pneumococcal repeat sequences.
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- BMC Genomics, 2011, v. 12, n. 1, p. 120, doi. 10.1186/1471-2164-12-120
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- Article
Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-652
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- Article
The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome.
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- PLoS Pathogens, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.ppat.1006966
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- Article
Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health Microbiology.
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- JAMA Internal Medicine, 2013, v. 173, n. 15, p. 1397, doi. 10.1001/jamainternmed.2013.7734
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- Article
Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae.
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- Nucleic Acids Research, 2023, v. 51, n. 19, p. 10375, doi. 10.1093/nar/gkad760
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- Article
Genome-wide epistasis and co-selection study using mutual information.
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- Nucleic Acids Research, 2019, v. 47, n. 18, p. e112, doi. 10.1093/nar/gkz656
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- Article
Fast hierarchical Bayesian analysis of population structure.
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- Nucleic Acids Research, 2019, v. 47, n. 11, p. 5539, doi. 10.1093/nar/gkz361
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- Article
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
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- Nucleic Acids Research, 2018, v. 46, n. 22, p. e134, doi. 10.1093/nar/gky783
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- Article
Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition.
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- Nucleic Acids Research, 2018, v. 46, n. 21, p. 11438, doi. 10.1093/nar/gky906
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- Article
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
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- Nucleic Acids Research, 2015, v. 43, n. 3, p. e15, doi. 10.1093/nar/gku1196
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- Article
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17327-w
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Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
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- 2019
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- Correction Notice
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
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- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0274-3
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A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children.
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- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 10, p. 1, doi. 10.1371/journal.pntd.0005975
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- Article
Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone.
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- BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-49
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- Article
Unravelling the complex interplay between antibiotic consumption and adaptive changes in methicillin-resistant Staphylococcus aureus.
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- Journal of Antimicrobial Chemotherapy (JAC), 2024, v. 79, n. 4, p. 891, doi. 10.1093/jac/dkae048
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- Article
Molecular Epidemiology of Group B Streptococcus Colonization in Egyptian Women.
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- Microorganisms, 2023, v. 11, n. 1, p. 38, doi. 10.3390/microorganisms11010038
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- Article
Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31858-4
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- Article
Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system.
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- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0643-z
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- Article
Determinants of Invasiveness Beneath the Capsule of the Pneumococcus.
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- Journal of Infectious Diseases, 2014, v. 209, n. 3, p. 321, doi. 10.1093/infdis/jit483
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- Article
Pneumococcal Capsular Switching: A Historical Perspective.
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- Journal of Infectious Diseases, 2013, v. 207, n. 3, p. 439, doi. 10.1093/infdis/jis703
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- Article
Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928–2013): antimicrobial use/misuse selects for resistance and drives evolution.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6511-6
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- Article
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology.
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- PLoS Pathogens, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.ppat.1002824
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- Article
A High-Resolution View of Genome-Wide Pneumococcal Transformation.
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- PLoS Pathogens, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.ppat.1002745
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- Article
The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones.
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- PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002129
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- Article
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814
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- Article
pyseer: a comprehensive tool for microbial pangenome-wide association studies.
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- Bioinformatics, 2018, v. 34, n. 24, p. 4310, doi. 10.1093/bioinformatics/bty539
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- Article
Investigating genomic diversity of Staphylococcus aureus associated with pediatric atopic dermatitis in South Africa.
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- Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1422902
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- Article
Genetic markers associated with host status and clonal expansion of Group B Streptococcus in the Netherlands.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1410651
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- Article
Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae.
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- Genes, 2019, v. 10, n. 9, p. 707, doi. 10.3390/genes10090707
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- Article
Producing polished prokaryotic pangenomes with the Panaroo pipeline.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02090-4
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- Article
Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants.
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- BMC Microbiology, 2012, v. 12, n. 1, p. 273, doi. 10.1186/1471-2180-12-273
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- Article
Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor.
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- BMC Microbiology, 2004, v. 4, p. 1
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- Article
New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor.
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- BMC Microbiology, 2003, v. 3, p. 1
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- Article
Selective and Genetic Constraints on Pneumococcal Serotype Switching.
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- PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005095
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Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes.
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- PLoS Genetics, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pgen.1004547
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- Article