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goSTAG: gene ontology subtrees to tag and annotate genes within a set.
Published in:
Source Code for Biology & Medicine, 2017, v. 12, p. 1, doi. 10.1186/s13029-017-0066-1
By:
- Bennett, Brian D.;
- Bushel, Pierre R.
Publication type:
Article
Imaging of Cellular Dynamics by Two-Photon Excitation Microscopy.
Published in:
Microscopy & Microanalysis, 1995, v. 1, n. 1, p. 25, doi. 10.1017/S1431927695110259
By:
- Piston, David W.;
- Bennett, Brian D.;
- Ying, Guangtao
Publication type:
Article
Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid.
Published in:
Frontiers in Oncology, 2024, p. 1, doi. 10.3389/fonc.2024.1389634
By:
- Carswell, Gleta;
- Chamberlin, John;
- Bennett, Brian D.;
- Bushel, Pierre R.;
- Chorley, Brian N.
Publication type:
Article
Revealing a human p53 universe.
Published in:
Nucleic Acids Research, 2018, v. 46, n. 16, p. 8153, doi. 10.1093/nar/gky720
By:
- Nguyen, Thuy-Ai T;
- Grimm, Sara A;
- Bushel, Pierre R;
- Li, Jianying;
- Li, Yuanyuan;
- Bennett, Brian D;
- Lavender, Christopher A;
- Ward, James M;
- Fargo, David C;
- Anderson, Carl W
Publication type:
Article
Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 22, p. 12723, doi. 10.1093/nar/gkx884
By:
- Pishun Li;
- Li Wang;
- Bennett, Brian D.;
- Wang, Jiajia;
- Jialun Li;
- Yufeng Qin;
- Motoki Takaku;
- Wade, Paul A.;
- Jiemin Wong;
- Guang Hu
Publication type:
Article
ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 10, p. 5678, doi. 10.1093/nar/gkx270
By:
- Lavender, Christopher A.;
- Shapiro, Andrew J.;
- Burkholder, Adam B.;
- Bennett, Brian D.;
- Adelman, Karen;
- Fargo, David C.
Publication type:
Article
Registration of 'NemaTAM II' peanut.
Published in:
Journal of Plant Registrations, 2023, v. 17, n. 2, p. 291, doi. 10.1002/plr2.20257
By:
- Baring, Michael R.;
- Cason, John M.;
- Burow, Mark D.;
- Simpson, C. E.;
- Chagoya, Jennifer;
- Bennett, Brian D.
Publication type:
Article
Registration of 'AG18' peanut.
Published in:
Journal of Plant Registrations, 2021, v. 15, n. 3, p. 435, doi. 10.1002/plr2.20162
By:
- Baring, Michael R.;
- Cason, John M.;
- Burow, Mark D.;
- Simpson, Charles E.;
- Chagoya, Jennifer;
- Bennett, Brian D.
Publication type:
Article
A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning.
Published in:
PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044635
By:
- Bennett, Brian D.;
- Qing Xiong;
- Mukherjee, Sayan;
- Furey, Terrence S.
Publication type:
Article
NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10905-7
By:
- Oldfield, Andrew J.;
- Henriques, Telmo;
- Kumar, Dhirendra;
- Burkholder, Adam B.;
- Cinghu, Senthilkumar;
- Paulet, Damien;
- Bennett, Brian D.;
- Yang, Pengyi;
- Scruggs, Benjamin S.;
- Lavender, Christopher A.;
- Rivals, Eric;
- Adelman, Karen;
- Jothi, Raja
Publication type:
Article
DNA methylation in mice is influenced by genetics as well as sex and life experience.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08067-z
By:
- Grimm, Sara A.;
- Shimbo, Takashi;
- Takaku, Motoki;
- Thomas, James W.;
- Auerbach, Scott;
- Bennett, Brian D.;
- Bucher, John R.;
- Burkholder, Adam B.;
- Day, Frank;
- Du, Ying;
- Duncan, Christopher G.;
- French, John E.;
- Foley, Julie F.;
- Li, Jianying;
- Merrick, B. Alex;
- Tice, Raymond R.;
- Wang, Tianyuan;
- Xu, Xiaojiang;
- NISC Comparative Sequencing Program;
- Bushel, Pierre R.
Publication type:
Article
Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type–Specific Enhancer Activation and Gene Expression.
Published in:
Environmental Health Perspectives, 2018, v. 126, n. 4, p. 047015-1, doi. 10.1289/EHP2395
By:
- Ma Wan;
- Bennett, Brian D.;
- Pittman, Gary S.;
- Campbell, Michelle R.;
- Reynolds, Lindsay M.;
- Porter, Devin K.;
- Crowl, Christopher L.;
- Xuting Wang;
- Dan Su;
- Englert, Neal A.;
- Thompson, Isabel J.;
- Yongmei Liu;
- Bell, Douglas A.
Publication type:
Article
Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.
Published in:
PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0166486
By:
- Su, Dan;
- Wang, Xuting;
- Campbell, Michelle R.;
- Porter, Devin K.;
- Pittman, Gary S.;
- Bennett, Brian D.;
- Wan, Ma;
- Englert, Neal A.;
- Crowl, Christopher L.;
- Gimple, Ryan N.;
- Adamski, Kelly N.;
- Huang, Zhiqing;
- Murphy, Susan K.;
- Bell, Douglas A.
Publication type:
Article
Mice deficient in BACE1, the Alzheimer's β-secretase, have normal phenotype and abolished β-amyloid generation.
Published in:
Nature Neuroscience, 2001, v. 4, n. 3, p. 231, doi. 10.1038/85059
By:
- Luo, Yi;
- Bolon, Brad;
- Kahn, Steve;
- Bennett, Brian D.;
- Babu-Khan, Safura;
- Denis, Paul;
- Fan, Wei;
- Kha, Hue;
- Zhang, Jianhua;
- Gong, Yunhua;
- Martin, Laura;
- Louis, Jean-Claude;
- Yan, Qiao;
- Richards, William G.;
- Citron, Martin;
- Vassar, Robert
Publication type:
Article
Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 9, p. 4756, doi. 10.1093/nar/gkaa179
By:
- Takaku, Motoki;
- Grimm, Sara A;
- De Kumar, Bony;
- Bennett, Brian D;
- Wade, Paul A
Publication type:
Article
GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03478-4
By:
- Motoki Takaku;
- Grimm, Sara A.;
- Roberts, John D.;
- Chrysovergis, Kaliopi;
- Bennett, Brian D.;
- Myers, Page;
- Perera, Lalith;
- Tucker, Charles J.;
- Perou, Charles M.;
- Wade, Paul A.
Publication type:
Article
P2-mediated responses in osteoclasts and osteoclast-like cells.
Published in:
Drug Development Research, 2001, v. 53, n. 2/3, p. 126, doi. 10.1002/ddr.1179
By:
- Steinberg, Thomas H.;
- Jørgensen, Niklas R.;
- Bong, Jeffrey S.;
- Henriksen, Zanne;
- Atal, Namita;
- Lin, George C.;
- Bennett, Brian D.;
- Eriksen, Erik F.;
- Sørensen, Ole H.;
- Civitelli, Roberto
Publication type:
Article
Prospective epigenome and transcriptome analyses of cord and peripheral blood from preterm infants at risk of bronchopulmonary dysplasia.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39313-0
By:
- Cho, Hye-Youn;
- Wang, Xuting;
- Campbell, Michelle R.;
- Panduri, Vijayalakshmi;
- Coviello, Silvina;
- Caballero, Mauricio T.;
- Bennett, Brian D.;
- Kleeberger, Steven R.;
- Polack, Fernando P.;
- Ofman, Gaston;
- Bell, Douglas A.
Publication type:
Article
Correction: Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.
Published in:
2017
By:
- Su, Dan;
- Wang, Xuting;
- Campbell, Michelle R.;
- Porter, Devin K.;
- Pittman, Gary S.;
- Bennett, Brian D.;
- Wan, Ma;
- Englert, Neal A.;
- Crowl, Christopher L.;
- Gimple, Ryan C.;
- Adamski, Kelly N.;
- Huang, Zhiqing;
- Murphy, Susan K.;
- Bell, Douglas A.
Publication type:
Correction Notice
Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.
Published in:
PLoS Genetics, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pgen.1006224
By:
- Lavender, Christopher A.;
- Cannady, Kimberly R.;
- Hoffman, Jackson A.;
- Trotter, Kevin W.;
- Gilchrist, Daniel A.;
- Bennett, Brian D.;
- Burkholder, Adam B.;
- Burd, Craig J.;
- Fargo, David C.;
- Archer, Trevor K.
Publication type:
Article

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