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Identification and Analysis of Fungal-Specific Regions in the Aspergillus fumigatus Cu Exporter CrpA That Are Essential for Cu Resistance but Not for Virulence.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 3705, doi. 10.3390/ijms24043705
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- Article
Structure of plant photosystem I-plastocyanin complex reveals strong hydrophobic interactions.
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- Biochemical Journal, 2021, v. 478, n. 12, p. 2371, doi. 10.1042/BCJ20210267
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- Article
Dimeric and high-resolution structures of Chlamydomonas Photosystem I from a temperature-sensitive Photosystem II mutant.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02911-7
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- Article
On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.64415
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- Article
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
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- Nucleic Acids Research, 2016, v. 44, n. W1, p. W344, doi. 10.1093/nar/gkw408
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- Article
PredictProtein—an open resource for online prediction of protein structural and functional features.
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- Nucleic Acids Research, 2014, v. 42, n. W1, p. W337, doi. 10.1093/nar/gku366
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- Article
Monte Carlo simulations of peptide–membrane interactions with the MCPep web server.
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- Nucleic Acids Research, 2012, v. 40, p. W358, doi. 10.1093/nar/gks577
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- Article
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
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- Nucleic Acids Research, 2010, v. 38, n. 21, p. 7869, doi. 10.1093/nar/gkq1208
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- Article
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W529, doi. 10.1093/nar/gkq399
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- Article
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W523, doi. 10.1093/nar/gkq528
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- Article
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D323, doi. 10.1093/nar/gkn822
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- Article
Mutations in the gene encoding pejvakin, a newly identified protein of the afferent auditory pathway, cause DFNB59 auditory neuropathy.
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- Nature Genetics, 2006, v. 38, n. 7, p. 770, doi. 10.1038/ng1829
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- Article
The uncoupled ATPase activity of the ABC transporter BtuC<sub>2</sub>D<sub>2</sub> leads to a hysteretic conformational change, conformational memory, and improved activity.
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- Scientific Reports, 2016, p. 21696, doi. 10.1038/srep21696
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- Article
Structure and Flexibility of the C-Ring in the Electromotor of Rotary F<sub>o</sub>F<sub>1</sub>-ATPase of Pea Chloroplasts.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043045
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- Article
The ConSurf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures.
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- Proteins, 2005, v. 58, n. 3, p. 610, doi. 10.1002/prot.20305
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- Article
Evolutionary analysis reveals collective properties and specificity in the C-type lectin and lectin-like domain superfamily.
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- Proteins, 2003, v. 53, n. 1, p. 44, doi. 10.1002/prot.10440
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- Article
Residue frequencies and pairing preferences at protein-protein interfaces.
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- Proteins, 2001, v. 43, n. 2, p. 89, doi. 10.1002/1097-0134(20010501)43:2<89::AID-PROT1021>3.0.CO;2-H
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- Article
C5 conserved region of hydrophilic C‐terminal part of Saccharomyces cerevisiae Nha1 antiporter determines its requirement of Erv14 COPII cargo receptor for plasma‐membrane targeting.
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- Molecular Microbiology, 2021, v. 115, n. 1, p. 41, doi. 10.1111/mmi.14595
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- Article
Stress-protective signalling of prion protein is corrupted by scrapie prions.
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- EMBO Journal, 2008, v. 27, n. 14, p. 1974, doi. 10.1038/emboj.2008.122
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- Article
Reused Protein Segments Linked to Functional Dynamics.
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- Molecular Biology & Evolution, 2024, v. 41, n. 9, p. 1, doi. 10.1093/molbev/msae184
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- Article
Erratum to: Bridging themes: short protein segments found in different architectures.
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- 2021
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- Correction Notice
Bridging Themes: Short Protein Segments Found in Different Architectures.
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- Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2191, doi. 10.1093/molbev/msab017
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- Article
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w255, doi. 10.1093/nar/gki496
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- Article
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w299, doi. 10.1093/nar/gki370
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- Article
DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations.
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- BMC Bioinformatics, 2019, v. 20, p. N.PAG, doi. 10.1186/s12859-019-2923-1
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- Article
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli.
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- PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004705
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- Article
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004461
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- Article
Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel.
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- PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003976
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- Article
Cooperative Transition between Open and Closed Conformations in Potassium Channels.
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- PLoS Computational Biology, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000164
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- Article
Functional evaluation of autism-associated mutations in NHE9.
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- Nature Communications, 2013, v. 4, n. 9, p. 2510, doi. 10.1038/ncomms3510
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- Article
Metal binding spectrum and model structure of the Bacillus anthracis virulence determinant MntA.
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- Metallomics, 2015, v. 7, n. 10, p. 1407, doi. 10.1039/c5mt00100e
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- Article
Potential Antigenic Cross-reactivity Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Dengue Viruses.
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- Clinical Infectious Diseases, 2021, v. 73, n. 7, p. e2444, doi. 10.1093/cid/ciaa1207
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- Article
Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior.
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- Molecular Biology & Evolution, 2004, v. 21, n. 9, p. 1781, doi. 10.1093/molbev/msh194
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- Article
Co-evolving residues in membrane proteins.
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- Bioinformatics, 2007, v. 23, n. 24, p. 3312, doi. 10.1093/bioinformatics/btm515
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- Article
Prediction and simulation of motion in pairs of transmembrane α-helices.
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- Bioinformatics, 2007, v. 23, n. 2, p. e212, doi. 10.1093/bioinformatics/btl325
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- Article
In silico identification of functional regions in proteins.
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- Bioinformatics, 2005, v. 21, p. i328, doi. 10.1093/bioinformatics/bti1023
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- Article
In silico identification of functional regions in proteins.
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- Bioinformatics, 2005, v. 21, n. 1, p. i328, doi. 10.1093/bioinformatics/bti1023
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- Article
Assigning transmembrane segments to helices in intermediate-resolution structures.
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- Bioinformatics, 2004, v. 20, n. suppl_1, p. i122, doi. 10.1093/bioinformatics/bth939
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- Article
ConSeq: the identification of functionally and structurally important residues in protein sequences.
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- Bioinformatics, 2004, v. 20, n. 8, p. 1322, doi. 10.1093/bioinformatics/bth070
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- Article
Assigning transmembrane segments to helices in intermediate-resolution structures.
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- Bioinformatics, 2004, v. 20, p. i122, doi. 10.1093/bioinformatics/bth939
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- Article
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information.
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- Bioinformatics, 2003, v. 19, n. 1, p. 163, doi. 10.1093/bioinformatics/19.1.163
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- Article
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.
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- Bioinformatics, 2002, v. 18, p. S71, doi. 10.1093/bioinformatics/18.suppl_1.S71
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- Article
Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus.
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- Scientific Reports, 2015, p. 12828, doi. 10.1038/srep12828
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- Article
PredictProtein - Predicting Protein Structure and Function for 29 Years.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W535, doi. 10.1093/nar/gkab354
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- Article
Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06770-5
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- Article
BcXYG1, a Secreted Xyloglucanase from Botrytis cinerea, Triggers Both Cell Death and Plant Immune Responses.
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- Plant Physiology, 2017, v. 175, n. 1, p. 438, doi. 10.1104/pp.17.00375
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- Article
A Myo6 Mutation Destroys Coordination between the Myosin Heads, Revealing New Functions of Myosin VI in the Stereocilia of Mammalian Inner Ear Hair Cells.
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- PLoS Genetics, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.pgen.1000207
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- Article
Using ConSurf to Detect Functionally Important Regions in RNA.
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- Current Protocols, 2021, v. 1, n. 10, p. 1, doi. 10.1002/cpz1.270
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- Article
Representation of the Protein Universe using Classifications, Maps, and Networks.
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- Israel Journal of Chemistry, 2014, v. 54, n. 8/9, p. 1286, doi. 10.1002/ijch.201400001
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- Article
Cover Picture: ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function / JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia (Isr. J. Chem. 3-4/2013).
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- Israel Journal of Chemistry, 2013, v. 53, n. 3/4, p. 137, doi. 10.1002/ijch.201390002
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- Article