Works by Beisser, Daniela

Results: 31

Nutrient-driven genome evolution revealed by comparative genomics of chrysomonad flagellates.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01781-3

By:

Majda, Stephan;
Beisser, Daniela;
Boenigk, Jens

Publication type:

Article

Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00154

By:

Nuy, Julia K.;
Hoetzinger, Matthias;
Hahn, Martin W.;
Beisser, Daniela;
Boenigk, Jens

Publication type:

Article

Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution.

Published in:

Frontiers in Microbiology, 2022, p. 1, doi. 10.3389/fmicb.2021.787290

By:

Frantal, Daniela;
Agatha, Sabine;
Beisser, Daniela;
Boenigk, Jens;
Darienko, Tatyana;
Dirren-Pitsch, Gianna;
Filker, Sabine;
Gruber, Michael;
Kammerlander, Barbara;
Nachbaur, Laura;
Scheffel, Ulrike;
Stoeck, Thorsten;
Qian, Kuimei;
Weißenbacher, Birgit;
Pröschold, Thomas;
Sonntag, Bettina

Publication type:

Article

Genome‐resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.

Published in:

Environmental Microbiology, 2024, v. 26, n. 6, p. 1, doi. 10.1111/1462-2920.16634

By:

Shah, Manan;
Bornemann, Till L. V.;
Nuy, Julia K.;
Hahn, Martin W.;
Probst, Alexander J.;
Beisser, Daniela;
Boenigk, Jens

Publication type:

Article

Factors shaping community patterns of protists and bacteria on a European scale.

Published in:

Environmental Microbiology, 2020, v. 22, n. 6, p. 2243, doi. 10.1111/1462-2920.14992

By:

Bock, Christina;
Jensen, Manfred;
Forster, Dominik;
Marks, Sabina;
Nuy, Julia;
Psenner, Roland;
Beisser, Daniela;
Boenigk, Jens

Publication type:

Article

Quantification of the covariation of lake microbiomes and environmental variables using a machine learning‐based framework.

Published in:

Molecular Ecology, 2021, v. 30, n. 9, p. 2131, doi. 10.1111/mec.15872

By:

Sperlea, Theodor;
Kreuder, Nico;
Beisser, Daniela;
Hattab, Georges;
Boenigk, Jens;
Heider, Dominik

Publication type:

Article

Intraspecific Variation in Protists: Clues for Microevolution from Poteriospumella lacustris (Chrysophyceae).

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 9, p. 2492, doi. 10.1093/gbe/evz171

By:

Majda, Stephan;
Boenigk, Jens;
Beisser, Daniela

Publication type:

Article

Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.

Published in:

PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0168183

By:

Beisser, Daniela;
Kaschani, Farnusch;
Graupner, Nadine;
Grossmann, Lars;
Jensen, Manfred;
Ninck, Sabrina;
Schulz, Florian;
Rahmann, Sven;
Boenigk, Jens;
Kaiser, Markus

Publication type:

Article

Mutational dynamics between primary and relapse neuroblastomas.

Published in:

Nature Genetics, 2015, v. 47, n. 8, p. 872, doi. 10.1038/ng.3349

By:

Schramm, Alexander;
Althoff, Kristina;
Mahlow, Ellen;
Odersky, Andrea;
Henssen, Anton G;
Stephan, Harald;
De Preter, Katleen;
Speleman, Frank;
Plass, Christoph;
Lee, Sangkyun;
Lode, Holger N;
Henrich, Kai-Oliver;
Gartlgruber, Moritz;
Westermann, Frank;
Rahmann, Sven;
Fischer, Matthias;
Eggert, Angelika;
Schulte, Johannes H;
Köster, Johannes;
Beisser, Daniela

Publication type:

Article

Transcriptome Analysis in Tardigrade Species Reveals Specific Molecular Pathways for Stress Adaptations.

Published in:

Bioinformatics & Biology Insights, 2012, n. 6, p. 69, doi. 10.4137/BBI.S9150

By:

Förster, Frank;
Beisser, Daniela;
Grohme, Markus A.;
Chunguang Liang;
Mali, Brahim;
Siegl, Alexander Matthias;
Engelmann, Julia C.;
Shkumatov, Alexander V.;
Schokraie, Elham;
Müller, Tobias;
Schnölzer, Martina;
Schill, Ralph O.;
Frohme, Marcus;
Dandekar, Thomas

Publication type:

Article

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3147, doi. 10.1093/bioinformatics/btv316

By:

El-Kebir, Mohammed;
Soueidan, Hayssam;
Hume, Thomas;
Beisser, Daniela;
Dittrich, Marcus;
Müller, Tobias;
Blin, Guillaume;
Heringa, Jaap;
Nikolski, Macha;
Wessels, Lodewyk F. A.;
Klau, Gunnar W.

Publication type:

Article

Robustness and accuracy of functional modules in integrated network analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1887, doi. 10.1093/bioinformatics/bts265

By:

Beisser, Daniela;
Brunkhorst, Stefan;
Dandekar, Thomas;
Klau, Gunnar W.;
Dittrich, Marcus T.;
Müller, Tobias

Publication type:

Article

BioNet: an R-Package for the functional analysis of biological networks.

Published in:

Bioinformatics, 2010, v. 26, n. 8, p. 1129, doi. 10.1093/bioinformatics/btq089

By:

Beisser, Daniela;
Klau, Gunnar W.;
Dandekar, Thomas;
Müller, Tobias;
Dittrich, Marcus T.

Publication type:

Article

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum.

Published in:

BMC Systems Biology, 2012, v. 6, n. 1, p. 72, doi. 10.1186/1752-0509-6-72

By:

Beisser, Daniela;
Grohme, Markus A.;
Kopka, Joachim;
Frohme, Marcus;
Schill, Ralph O.;
Hengherr, Steffen;
Dandekar, Thomas;
Klau, Gunnar W.;
Dittrich, Marcus;
Mller, Tobias

Publication type:

Article

NGS Detects Extensive Genomic Alterations in Survivors of Irradiated Normal Human Fibroblast Cells.

Published in:

Radiation Research, 2025, v. 203, n. 1, p. 37, doi. 10.1667/RADE-24-00094.1

By:

Soni, Aashish;
Beisser, Daniela;
Mladenov, Emil;
Höller, Matthias;
Wohlers, Inken;
Nikolov, Vladimir;
Magin, Simon;
Mussfeldt, Tamara;
Klein-Hitpass, Ludger;
Cornforth, Michael N.;
Loucas, Bradford D.;
Rahmann, Sven;
Iliakis, George

Publication type:

Article

Breaking the Standard: Can Oxford Nanopore Technologies Sequencing Compete With Illumina in Protistan Amplicon Studies?

Published in:

Environmental DNA, 2025, v. 7, n. 2, p. 1, doi. 10.1002/edn3.70084

By:

Bludau, Dana;
Sieber, Guido;
Shah, Manan;
Deep, Aman;
Boenigk, Jens;
Beisser, Daniela

Publication type:

Article

Geographic distance and mountain ranges structure freshwater protist communities on a European scale.

Published in:

Metabarcoding & Metagenomics, 2018, n. 2, p. 1, doi. 10.3897/mbmg.2.21519

By:

Boenigk, Jens;
Wodniok, Sabina;
Bock, Christina;
Beisser, Daniela;
Hempel, Christopher;
Grossmann, Lars;
Lange, Anja;
Jensen, Manfred

Publication type:

Article

Functional and phylogenetic analysis of the core transcriptome of Ochromonadales.

Published in:

Metabarcoding & Metagenomics, 2017, n. 1, p. 1, doi. 10.3897/mbmg.1.19862

By:

Graupner, Nadine;
Boenigk, Jens;
Bock, Christina;
Jensen, Manfred;
Marks, Sabina;
Rahmann, Sven;
Beisser, Daniela

Publication type:

Article

Bioinformatics identifies tardigrade molecular adaptations including the DNA‐j family and first steps towards dynamical modelling.

Published in:

Journal of Zoological Systematics & Evolutionary Research, 2011, v. 49, n. 1, p. 120, doi. 10.1111/j.1439-0469.2010.00609.x

By:

Förster, Frank;
Beisser, Daniela;
Frohme, Marcus;
Schill, Ralph O.;
Dandekar, Thomas

Publication type:

Article

Bioinformatics identifies tardigrade molecular adaptations including the DNA-j family and first steps towards dynamical modelling.

Published in:

Journal of Zoological Systematics & Evolutionary Research, 2011, v. 49, p. 120, doi. 10.1111/j.1439-0469.2010.00609.x

By:

Förster, Frank;
Beisser, Daniela;
Frohme, Marcus;
Schill, Ralph O.;
Dandekar, Thomas

Publication type:

Article

Propionate supplementation promotes the expansion of peripheral regulatory T-Cells in patients with end-stage renal disease.

Published in:

Journal of Nephrology (JNonline), 2020, v. 33, n. 4, p. 817, doi. 10.1007/s40620-019-00694-z

By:

Meyer, Fabian;
Seibert, Felix S.;
Nienen, Mikalai;
Welzel, Marius;
Beisser, Daniela;
Bauer, Frederic;
Rohn, Benjamin;
Westhoff, Timm H.;
Stervbo, Ulrik;
Babel, Nina

Publication type:

Article

TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4168-6

By:

Beisser, Daniela;
Graupner, Nadine;
Grossmann, Lars;
Timm, Henning;
Boenigk, Jens;
Rahmann, Sven

Publication type:

Article

A metatranscriptomic exploration of fungal and bacterial contributions to allochthonous leaf litter decomposition in the streambed.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19120

By:

Deep, Aman;
Sieber, Guido;
Boden, Lisa;
David, Gwendoline M.;
Baikova, Daria;
Buchner, Dominik;
Starke, Jörn;
Stach, Tom L.;
Reinders, Torben;
Hadžiomerović, Una;
Beszteri, Sára;
Probst, Alexander J.;
Boenigk, Jens;
Beisser, Daniela

Publication type:

Article

Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.5894

By:

Kraus, Diana;
Jingyun Chi;
Boenigk, Jens;
Beisser, Daniela;
Graupner, Nadine;
Dunthorn, Micah

Publication type:

Article

Functional screening identifies aryl hydrocarbon receptor as suppressor of lung cancer metastasis.

Published in:

Oncogenesis, 2020, v. 9, n. 11, p. 1, doi. 10.1038/s41389-020-00286-8

By:

Nothdurft, Silke;
Thumser-Henner, Clotilde;
Breitenbücher, Frank;
Okimoto, Ross A.;
Dorsch, Madeleine;
Opitz, Christiane A.;
Sadik, Ahmed;
Esser, Charlotte;
Hölzel, Michael;
Asthana, Saurabh;
Forster, Jan;
Beisser, Daniela;
Kalmbach, Sophie;
Grüner, Barbara M.;
Bivona, Trever G.;
Schramm, Alexander;
Schuler, Martin

Publication type:

Article

Trade-off between taxon diversity and functional diversity in European lake ecosystems.

Published in:

Molecular Ecology, 2016, v. 25, n. 23, p. 5876, doi. 10.1111/mec.13878

By:

Grossmann, Lars;
Beisser, Daniela;
Bock, Christina;
Chatzinotas, Antonis;
Jensen, Manfred;
Preisfeld, Angelika;
Psenner, Roland;
Rahmann, Sven;
Wodniok, Sabina;
Boenigk, Jens

Publication type:

Article

Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01498

By:

Beisser, Daniela;
Bock, Christina;
Hahn, Martin W.;
Vos, Matthijs;
Sures, Bernd;
Rahmann, Sven;
Boenigk, Jens

Publication type:

Article

Effects of Silver Nitrate and Silver Nanoparticles on a Planktonic Community: General Trends after Short-Term Exposure.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095340

By:

Boenigk, Jens;
Beisser, Daniela;
Zimmermann, Sonja;
Bock, Christina;
Jakobi, Jurij;
Grabner, Daniel;
Groβmann, Lars;
Rahmann, Sven;
Barcikowski, Stephan;
Sures, Bernd

Publication type:

Article

Human TLR8 senses UR/URR motifs in bacterial and mitochondrial RNA.

Published in:

EMBO Reports, 2015, v. 16, n. 12, p. 1656, doi. 10.15252/embr.201540861

By:

Krüger, Anne;
Oldenburg, Marina;
Chebrolu, Chiranjeevi;
Beisser, Daniela;
Kolter, Julia;
Sigmund, Anna M;
Steinmann, Jörg;
Schäfer, Simon;
Hochrein, Hubertus;
Rahmann, Sven;
Wagner, Hermann;
Henneke, Philipp;
Hornung, Veit;
Buer, Jan;
Kirschning, Carsten J

Publication type:

Article

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03852-4

By:

Welzel, Marius;
Lange, Anja;
Heider, Dominik;
Schwarz, Michael;
Freisleben, Bernd;
Jensen, Manfred;
Boenigk, Jens;
Beisser, Daniela

Publication type:

Article

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.

Published in:

BMC Genomics, 2009, v. 10, p. 469, doi. 10.1186/1471-2164-10-469

By:

Förster, Frank;
Liang, Chuanguang;
Shkumatov, Alexander;
Beisser, Daniela;
Engelmann, Julia C.;
Schnölzer, Martina;
Frohme, Marcus;
Müller, Tobias;
Schill, Ralph O.;
Dandekar, Thomas

Publication type:

Article