Works by Beisser, Daniela

Results: 29

Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.5894
By:
- Kraus, Diana;
- Jingyun Chi;
- Boenigk, Jens;
- Beisser, Daniela;
- Graupner, Nadine;
- Dunthorn, Micah
Publication type:
Article
Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01498
By:
- Beisser, Daniela;
- Bock, Christina;
- Hahn, Martin W.;
- Vos, Matthijs;
- Sures, Bernd;
- Rahmann, Sven;
- Boenigk, Jens
Publication type:
Article
Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum.
Published in:
BMC Systems Biology, 2012, v. 6, n. 1, p. 72, doi. 10.1186/1752-0509-6-72
By:
- Beisser, Daniela;
- Grohme, Markus A.;
- Kopka, Joachim;
- Frohme, Marcus;
- Schill, Ralph O.;
- Hengherr, Steffen;
- Dandekar, Thomas;
- Klau, Gunnar W.;
- Dittrich, Marcus;
- Mller, Tobias
Publication type:
Article
TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4168-6
By:
- Beisser, Daniela;
- Graupner, Nadine;
- Grossmann, Lars;
- Timm, Henning;
- Boenigk, Jens;
- Rahmann, Sven
Publication type:
Article
Geographic distance and mountain ranges structure freshwater protist communities on a European scale.
Published in:
Metabarcoding & Metagenomics, 2018, n. 2, p. 1, doi. 10.3897/mbmg.2.21519
By:
- Boenigk, Jens;
- Wodniok, Sabina;
- Bock, Christina;
- Beisser, Daniela;
- Hempel, Christopher;
- Grossmann, Lars;
- Lange, Anja;
- Jensen, Manfred
Publication type:
Article
Functional and phylogenetic analysis of the core transcriptome of Ochromonadales.
Published in:
Metabarcoding & Metagenomics, 2017, n. 1, p. 1, doi. 10.3897/mbmg.1.19862
By:
- Graupner, Nadine;
- Boenigk, Jens;
- Bock, Christina;
- Jensen, Manfred;
- Marks, Sabina;
- Rahmann, Sven;
- Beisser, Daniela
Publication type:
Article
Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution.
Published in:
Frontiers in Microbiology, 2022, p. 1, doi. 10.3389/fmicb.2021.787290
By:
- Frantal, Daniela;
- Agatha, Sabine;
- Beisser, Daniela;
- Boenigk, Jens;
- Darienko, Tatyana;
- Dirren-Pitsch, Gianna;
- Filker, Sabine;
- Gruber, Michael;
- Kammerlander, Barbara;
- Nachbaur, Laura;
- Scheffel, Ulrike;
- Stoeck, Thorsten;
- Qian, Kuimei;
- Weißenbacher, Birgit;
- Pröschold, Thomas;
- Sonntag, Bettina
Publication type:
Article
xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.
Published in:
Bioinformatics, 2015, v. 31, n. 19, p. 3147, doi. 10.1093/bioinformatics/btv316
By:
- El-Kebir, Mohammed;
- Soueidan, Hayssam;
- Hume, Thomas;
- Beisser, Daniela;
- Dittrich, Marcus;
- Müller, Tobias;
- Blin, Guillaume;
- Heringa, Jaap;
- Nikolski, Macha;
- Wessels, Lodewyk F. A.;
- Klau, Gunnar W.
Publication type:
Article
Intraspecific Variation in Protists: Clues for Microevolution from Poteriospumella lacustris (Chrysophyceae).
Published in:
Genome Biology & Evolution, 2019, v. 11, n. 9, p. 2492, doi. 10.1093/gbe/evz171
By:
- Majda, Stephan;
- Boenigk, Jens;
- Beisser, Daniela
Publication type:
Article
Bioinformatics identifies tardigrade molecular adaptations including the DNA‐j family and first steps towards dynamical modelling.
Published in:
Journal of Zoological Systematics & Evolutionary Research, 2011, v. 49, n. 1, p. 120, doi. 10.1111/j.1439-0469.2010.00609.x
By:
- Förster, Frank;
- Beisser, Daniela;
- Frohme, Marcus;
- Schill, Ralph O.;
- Dandekar, Thomas
Publication type:
Article
Bioinformatics identifies tardigrade molecular adaptations including the DNA-j family and first steps towards dynamical modelling.
Published in:
Journal of Zoological Systematics & Evolutionary Research, 2011, v. 49, p. 120, doi. 10.1111/j.1439-0469.2010.00609.x
By:
- Förster, Frank;
- Beisser, Daniela;
- Frohme, Marcus;
- Schill, Ralph O.;
- Dandekar, Thomas
Publication type:
Article
NGS Detects Extensive Genomic Alterations in Survivors of Irradiated Normal Human Fibroblast Cells.
Published in:
Radiation Research, 2025, v. 203, n. 1, p. 37, doi. 10.1667/RADE-24-00094.1
By:
- Soni, Aashish;
- Beisser, Daniela;
- Mladenov, Emil;
- Höller, Matthias;
- Wohlers, Inken;
- Nikolov, Vladimir;
- Magin, Simon;
- Mussfeldt, Tamara;
- Klein-Hitpass, Ludger;
- Cornforth, Michael N.;
- Loucas, Bradford D.;
- Rahmann, Sven;
- Iliakis, George
Publication type:
Article
Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.
Published in:
BMC Genomics, 2009, v. 10, p. 469, doi. 10.1186/1471-2164-10-469
By:
- Förster, Frank;
- Liang, Chuanguang;
- Shkumatov, Alexander;
- Beisser, Daniela;
- Engelmann, Julia C.;
- Schnölzer, Martina;
- Frohme, Marcus;
- Müller, Tobias;
- Schill, Ralph O.;
- Dandekar, Thomas
Publication type:
Article
Genome‐resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.
Published in:
Environmental Microbiology, 2024, v. 26, n. 6, p. 1, doi. 10.1111/1462-2920.16634
By:
- Shah, Manan;
- Bornemann, Till L. V.;
- Nuy, Julia K.;
- Hahn, Martin W.;
- Probst, Alexander J.;
- Beisser, Daniela;
- Boenigk, Jens
Publication type:
Article
Factors shaping community patterns of protists and bacteria on a European scale.
Published in:
Environmental Microbiology, 2020, v. 22, n. 6, p. 2243, doi. 10.1111/1462-2920.14992
By:
- Bock, Christina;
- Jensen, Manfred;
- Forster, Dominik;
- Marks, Sabina;
- Nuy, Julia;
- Psenner, Roland;
- Beisser, Daniela;
- Boenigk, Jens
Publication type:
Article
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis.
Published in:
PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0168183
By:
- Beisser, Daniela;
- Kaschani, Farnusch;
- Graupner, Nadine;
- Grossmann, Lars;
- Jensen, Manfred;
- Ninck, Sabrina;
- Schulz, Florian;
- Rahmann, Sven;
- Boenigk, Jens;
- Kaiser, Markus
Publication type:
Article
Human TLR8 senses UR/URR motifs in bacterial and mitochondrial RNA.
Published in:
EMBO Reports, 2015, v. 16, n. 12, p. 1656, doi. 10.15252/embr.201540861
By:
- Krüger, Anne;
- Oldenburg, Marina;
- Chebrolu, Chiranjeevi;
- Beisser, Daniela;
- Kolter, Julia;
- Sigmund, Anna M;
- Steinmann, Jörg;
- Schäfer, Simon;
- Hochrein, Hubertus;
- Rahmann, Sven;
- Wagner, Hermann;
- Henneke, Philipp;
- Hornung, Veit;
- Buer, Jan;
- Kirschning, Carsten J
Publication type:
Article
Functional screening identifies aryl hydrocarbon receptor as suppressor of lung cancer metastasis.
Published in:
Oncogenesis, 2020, v. 9, n. 11, p. 1, doi. 10.1038/s41389-020-00286-8
By:
- Nothdurft, Silke;
- Thumser-Henner, Clotilde;
- Breitenbücher, Frank;
- Okimoto, Ross A.;
- Dorsch, Madeleine;
- Opitz, Christiane A.;
- Sadik, Ahmed;
- Esser, Charlotte;
- Hölzel, Michael;
- Asthana, Saurabh;
- Forster, Jan;
- Beisser, Daniela;
- Kalmbach, Sophie;
- Grüner, Barbara M.;
- Bivona, Trever G.;
- Schramm, Alexander;
- Schuler, Martin
Publication type:
Article
Mutational dynamics between primary and relapse neuroblastomas.
Published in:
Nature Genetics, 2015, v. 47, n. 8, p. 872, doi. 10.1038/ng.3349
By:
- Schramm, Alexander;
- Althoff, Kristina;
- Mahlow, Ellen;
- Odersky, Andrea;
- Henssen, Anton G;
- Stephan, Harald;
- De Preter, Katleen;
- Speleman, Frank;
- Plass, Christoph;
- Lee, Sangkyun;
- Lode, Holger N;
- Henrich, Kai-Oliver;
- Gartlgruber, Moritz;
- Westermann, Frank;
- Rahmann, Sven;
- Fischer, Matthias;
- Eggert, Angelika;
- Schulte, Johannes H;
- Köster, Johannes;
- Beisser, Daniela
Publication type:
Article
Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
Published in:
BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03852-4
By:
- Welzel, Marius;
- Lange, Anja;
- Heider, Dominik;
- Schwarz, Michael;
- Freisleben, Bernd;
- Jensen, Manfred;
- Boenigk, Jens;
- Beisser, Daniela
Publication type:
Article
Robustness and accuracy of functional modules in integrated network analysis.
Published in:
Bioinformatics, 2012, v. 28, n. 14, p. 1887, doi. 10.1093/bioinformatics/bts265
By:
- Beisser, Daniela;
- Brunkhorst, Stefan;
- Dandekar, Thomas;
- Klau, Gunnar W.;
- Dittrich, Marcus T.;
- Müller, Tobias
Publication type:
Article
BioNet: an R-Package for the functional analysis of biological networks.
Published in:
Bioinformatics, 2010, v. 26, n. 8, p. 1129, doi. 10.1093/bioinformatics/btq089
By:
- Beisser, Daniela;
- Klau, Gunnar W.;
- Dandekar, Thomas;
- Müller, Tobias;
- Dittrich, Marcus T.
Publication type:
Article
Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients.
Published in:
Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00154
By:
- Nuy, Julia K.;
- Hoetzinger, Matthias;
- Hahn, Martin W.;
- Beisser, Daniela;
- Boenigk, Jens
Publication type:
Article
Nutrient-driven genome evolution revealed by comparative genomics of chrysomonad flagellates.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01781-3
By:
- Majda, Stephan;
- Beisser, Daniela;
- Boenigk, Jens
Publication type:
Article
Transcriptome Analysis in Tardigrade Species Reveals Specific Molecular Pathways for Stress Adaptations.
Published in:
Bioinformatics & Biology Insights, 2012, n. 6, p. 69, doi. 10.4137/BBI.S9150
By:
- Förster, Frank;
- Beisser, Daniela;
- Grohme, Markus A.;
- Chunguang Liang;
- Mali, Brahim;
- Siegl, Alexander Matthias;
- Engelmann, Julia C.;
- Shkumatov, Alexander V.;
- Schokraie, Elham;
- Müller, Tobias;
- Schnölzer, Martina;
- Schill, Ralph O.;
- Frohme, Marcus;
- Dandekar, Thomas
Publication type:
Article
Propionate supplementation promotes the expansion of peripheral regulatory T-Cells in patients with end-stage renal disease.
Published in:
Journal of Nephrology (JNonline), 2020, v. 33, n. 4, p. 817, doi. 10.1007/s40620-019-00694-z
By:
- Meyer, Fabian;
- Seibert, Felix S.;
- Nienen, Mikalai;
- Welzel, Marius;
- Beisser, Daniela;
- Bauer, Frederic;
- Rohn, Benjamin;
- Westhoff, Timm H.;
- Stervbo, Ulrik;
- Babel, Nina
Publication type:
Article
Quantification of the covariation of lake microbiomes and environmental variables using a machine learning‐based framework.
Published in:
Molecular Ecology, 2021, v. 30, n. 9, p. 2131, doi. 10.1111/mec.15872
By:
- Sperlea, Theodor;
- Kreuder, Nico;
- Beisser, Daniela;
- Hattab, Georges;
- Boenigk, Jens;
- Heider, Dominik
Publication type:
Article
Trade-off between taxon diversity and functional diversity in European lake ecosystems.
Published in:
Molecular Ecology, 2016, v. 25, n. 23, p. 5876, doi. 10.1111/mec.13878
By:
- Grossmann, Lars;
- Beisser, Daniela;
- Bock, Christina;
- Chatzinotas, Antonis;
- Jensen, Manfred;
- Preisfeld, Angelika;
- Psenner, Roland;
- Rahmann, Sven;
- Wodniok, Sabina;
- Boenigk, Jens
Publication type:
Article
Effects of Silver Nitrate and Silver Nanoparticles on a Planktonic Community: General Trends after Short-Term Exposure.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095340
By:
- Boenigk, Jens;
- Beisser, Daniela;
- Zimmermann, Sonja;
- Bock, Christina;
- Jakobi, Jurij;
- Grabner, Daniel;
- Groβmann, Lars;
- Rahmann, Sven;
- Barcikowski, Stephan;
- Sures, Bernd
Publication type:
Article