Found: 24
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Terraces in species tree inference from gene trees.
- Published in:
- BMC Ecology & Evolution, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12862-024-02309-z
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- Article
Pair-EGRET: enhancing the prediction of protein–protein interaction sites through graph attention networks and protein language models.
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- Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae588
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- Article
Machine learning based imputation techniques for estimating phylogenetic trees from incomplete distance matrices.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06892-5
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- Article
STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6519-y
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- Article
BEENE: deep learning-based nonlinear embedding improves batch effect estimation.
- Published in:
- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad479
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- Article
Quartet Fiduccia–Mattheyses revisited for larger phylogenetic studies.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad332
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- Article
wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
- Published in:
- Bioinformatics, 2021, v. 37, n. 21, p. 3734, doi. 10.1093/bioinformatics/btab428
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- Article
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129183
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- Article
Accurate Phylogenetic Tree Reconstruction from Quartets: A Heuristic Approach.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104008
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- Article
Evaluation of classification and forecasting methods on time series gene expression data.
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- PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0241686
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- Article
Quartet-based inference of cell differentiation trees from ChIP-Seq histone modification data.
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- PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0221270
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- Article
Gene tree parsimony for incomplete gene trees: addressing true biological loss.
- Published in:
- Algorithms for Molecular Biology, 2018, v. 13, p. 1, doi. 10.1186/s13015-017-0120-1
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- Article
EGRET: edge aggregated graph attention networks and transfer learning improve protein–protein interaction site prediction.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab578
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- Article
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab116
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- Article
Distance-Based Phylogenetic Placement with Statistical Support.
- Published in:
- Biology (2079-7737), 2022, v. 11, n. 8, p. N.PAG, doi. 10.3390/biology11081212
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- Article
CHAPAO: Likelihood and hierarchical reference-based representation of biomolecular sequences and applications to compressing multiple sequence alignments.
- Published in:
- PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0265360
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- Article
Biological computation and computational biology: survey, challenges, and discussion.
- Published in:
- Artificial Intelligence Review, 2021, v. 54, n. 6, p. 4169, doi. 10.1007/s10462-020-09951-1
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- Article
SAINT-Angle: self-attention augmented inception-inside-inception network and transfer learning improve protein backbone torsion angle prediction.
- Published in:
- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad042
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- Article
Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model.
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- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac055
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- Article
Genome wide association studies on seven yield‐related traits of 183 rice varieties in Bangladesh.
- Published in:
- Plant Direct, 2024, v. 8, n. 6, p. 1, doi. 10.1002/pld3.593
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- Article
Align-gram: Rethinking the Skip-gram Model for Protein Sequence Analysis.
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- Protein Journal, 2023, v. 42, n. 2, p. 135, doi. 10.1007/s10930-023-10096-7
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- Article
Disk covering methods improve phylogenomic analyses.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S7
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- Article
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction.
- Published in:
- Bioinformatics, 2020, v. 36, n. 17, p. 4599, doi. 10.1093/bioinformatics/btaa531
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- Article
Naive binning improves phylogenomic analyses.
- Published in:
- Bioinformatics, 2013, v. 29, n. 18, p. 2277, doi. 10.1093/bioinformatics/btt394
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- Article