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HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05335-8
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- Article
Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33300-1
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- Article
The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication.
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- Plant Journal, 2022, v. 111, n. 6, p. 1580, doi. 10.1111/tpj.15908
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- Article
BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification.
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- Plant Journal, 2022, v. 111, n. 4, p. 1183, doi. 10.1111/tpj.15871
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- Publication type:
- Article
Genome-Wide Association Study for Resistance to Rhynchosporium in a Diverse Collection of Spring Barley Germplasm.
- Published in:
- Agronomy, 2022, v. 12, n. 4, p. N.PAG, doi. 10.3390/agronomy12040782
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- Article
EORNA, a barley gene and transcript abundance database.
- Published in:
- Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-00872-4
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- Article
Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0990-5
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- Article
Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4.
- Published in:
- Theoretical & Applied Genetics, 2020, v. 133, n. 4, p. 1243, doi. 10.1007/s00122-020-03545-9
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- Publication type:
- Article
BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.
- Published in:
- BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6243-7
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- Article
Characterisation of barley resistance to rhynchosporium on chromosome 6HS.
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- Theoretical & Applied Genetics, 2019, v. 132, n. 4, p. 1089, doi. 10.1007/s00122-018-3262-8
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- Publication type:
- Article
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species <italic>Solanum verrucosum</italic> through DNA capture technologies.
- Published in:
- Theoretical & Applied Genetics, 2018, v. 131, n. 6, p. 1287, doi. 10.1007/s00122-018-3078-6
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- Article
ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley.
- Published in:
- Plant Physiology, 2018, v. 176, n. 4, p. 2750, doi. 10.1104/pp.17.01459
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- Article
Combining high density GWAS and grain ionomics to identify a major gene influencing sodium content.
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- 2017
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- Abstract
Development and Evaluation of a Barley 50k iSelect SNP Array.
- Published in:
- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01792
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- Publication type:
- Article
Association Mapping of Diastatic Power in UK Winter and Spring Barley by Exome Sequencing of Phenotypically Contrasting Variety Sets.
- Published in:
- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01566
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- Publication type:
- Article
An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0801-z
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- Publication type:
- Article
Chromatin state analysis of the barley epigenome reveals a higher-order structure defined by H3K27me1 and H3K27me3 abundance.
- Published in:
- Plant Journal, 2015, v. 84, n. 1, p. 111, doi. 10.1111/tpj.12963
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- Publication type:
- Article
WHIRLY1 Functions in the Control of Responses to Nitrogen Deficiency But Not Aphid Infestation in Barley.
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- Plant Physiology, 2015, v. 168, n. 3, p. 1140, doi. 10.1104/pp.15.00580
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- Publication type:
- Article
The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.
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- Cell Proliferation, 2014, v. 47, n. 6, p. 981, doi. 10.1111/tpj.12600
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- Article
Genome-Tagged Amplification (GTA): a PCR-based method to prepare sample-tagged amplicons from hundreds of individuals for next generation sequencing.
- Published in:
- Molecular Breeding, 2014, v. 34, n. 3, p. 977, doi. 10.1007/s11032-014-0090-7
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- Publication type:
- Article
The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.
- Published in:
- Plant Journal, 2014, v. 79, n. 6, p. 981, doi. 10.1111/tpj.12600
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- Publication type:
- Article
The use of genotyping by sequencing in blackcurrant ( Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences.
- Published in:
- Molecular Breeding, 2014, v. 33, n. 4, p. 835, doi. 10.1007/s11032-013-9996-8
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- Publication type:
- Article
An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-104
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- Publication type:
- Article
Using Tablet for visual exploration of second-generation sequencing data.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 2, p. 193, doi. 10.1093/bib/bbs012
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- Article
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley.
- Published in:
- Nature Genetics, 2012, v. 44, n. 12, p. 1388, doi. 10.1038/ng.2447
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- Article
Comparative visualization of genetic and physical maps with Strudel.
- Published in:
- Bioinformatics, 2011, v. 27, n. 9, p. 1307, doi. 10.1093/bioinformatics/btr111
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- Article
Flapjack—graphical genotype visualization.
- Published in:
- Bioinformatics, 2010, v. 26, n. 24, p. 3133, doi. 10.1093/bioinformatics/btq580
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- Article
Tablet—next generation sequence assembly visualization.
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- Bioinformatics, 2010, v. 26, n. 3, p. 401, doi. 10.1093/bioinformatics/btp666
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- Publication type:
- Article
An eQTL Analysis of Partial Resistance to Puccinia hordei in Barley.
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- PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008598
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- Article
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.
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- Bioinformatics, 2009, v. 25, n. 1, p. 126, doi. 10.1093/bioinformatics/btn575
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- Article
Automatic diatom identification using contour analysis by morphological curvature scale spaces.
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- Machine Vision & Applications, 2005, v. 16, n. 4, p. 217, doi. 10.1007/s00138-005-0175-8
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- Article
Digital microscopy in phycological research, with special reference to microalgae.
- Published in:
- Phycological Research, 2001, v. 49, n. 4, p. 263, doi. 10.1111/j.1440-1835.2001.tb00256.x
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- Publication type:
- Article