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Nanoscale 3D spatial addressing and valence control of quantum dots using wireframe DNA origami.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32662-w
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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28603-2
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Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics.
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- Nucleic Acids Research, 2022, v. 50, n. 2, p. 717, doi. 10.1093/nar/gkab1246
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- Article
Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami.
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- Nucleic Acids Research, 2021, v. 49, n. 18, p. 10265, doi. 10.1093/nar/gkab762
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- Article
The NEET Ways of Thinking: Implementing them at MIT and Assessing their Efficacy.
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- Advances in Engineering Education, 2021, v. 9, n. 3, p. 1
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- Article
Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02276-x
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- Article
Opportunities and challenges for the clinical translation of structured DNA assemblies as gene therapeutic delivery and vaccine vectors.
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- WIREs: Nanomedicine & Nanobiotechnology, 2021, v. 13, n. 1, p. 1, doi. 10.1002/wnan.1657
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- Article
Tract-specific analysis improves sensitivity of spinal cord diffusion MRI to cross-sectional and longitudinal changes in amyotrophic lateral sclerosis.
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- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-1093-z
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- Article
Automated sequence design of 2D wireframe DNA origami with honeycomb edges.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13457-y
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- Article
Multiplexed and high-throughput neuronal fluorescence imaging with diffusible probes.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12372-6
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- Article
DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images.
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- PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007012
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- Article
A Bayesian framework for high-throughput T cell receptor pairing.
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- Bioinformatics, 2019, v. 35, n. 8, p. 1318, doi. 10.1093/bioinformatics/bty801
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- Article
Structure and conformational dynamics of scaffolded DNA origami nanoparticles.
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- Nucleic Acids Research, 2017, v. 45, n. 11, p. 6284, doi. 10.1093/nar/gkx378
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- Article
Mapping translation ’hot-spots’ in live cells by tracking single molecules of mRNA and ribosomes.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.10415
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Time series modeling of live-cell shape dynamics for image-based phenotypic profiling.
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- Integrative Biology, 2016, v. 8, n. 1, p. 73, doi. 10.1039/c5ib00283d
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Inferring transient particle transport dynamics in live cells.
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- Nature Methods, 2015, v. 12, n. 9, p. 838, doi. 10.1038/nmeth.3483
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Lattice-free prediction of three-dimensional structure of programmed DNA assemblies.
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- Nature Communications, 2014, v. 5, n. 12, p. 5578, doi. 10.1038/ncomms6578
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Structure-based model for light-harvesting properties of nucleic acid nanostructures.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2159, doi. 10.1093/nar/gkt1269
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- Article
Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae.
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- Nucleic Acids Research, 2013, v. 41, n. 20, p. 9310, doi. 10.1093/nar/gkt715
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- Article
H2A.Z Acidic Patch Couples Chromatin Dynamics to Regulation of Gene Expression Programs during ESC Differentiation.
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- PLoS Genetics, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pgen.1003725
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Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures.
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- Nucleic Acids Research, 2012, v. 40, n. 7, p. 2862, doi. 10.1093/nar/gkr1173
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- Article
A primer to scaffolded DNA origami.
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- Nature Methods, 2011, v. 8, n. 3, p. 221, doi. 10.1038/nmeth.1570
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Conformational dynamics data bank: a database for conformational dynamics of proteins and supramolecular protein assemblies.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D451, doi. 10.1093/nar/gkq1088
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- Article
Transiently crosslinked F-actin bundles.
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- European Biophysics Journal, 2011, v. 40, n. 1, p. 93, doi. 10.1007/s00249-010-0621-z
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The subspace iteration method in protein normal mode analysis.
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- Journal of Computational Chemistry, 2010, v. 31, n. 1, p. 66, doi. 10.1002/jcc.21250
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A finite element framework for computation of protein normal modes and mechanical response.
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- Proteins, 2008, v. 70, n. 4, p. 1595, doi. 10.1002/prot.21708
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- Article
Actin-binding proteins sensitively mediate F-actin bundle stiffness.
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- Nature Materials, 2006, v. 5, n. 9, p. 748, doi. 10.1038/nmat1718
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Inverse Monte Carlo procedure for conformation determination of macromolecules.
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- Journal of Computational Chemistry, 2003, v. 24, n. 7, p. 876
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- Article