Works matching AU Bates, Declan G.

Results: 30

Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data.

Published in:

Bioinformatics, 2008, v. 24, n. 10, p. 1286, doi. 10.1093/bioinformatics/btn107

By:

Jongrae Kim;
Declan G. Bates;
Ian Postlethwaite;
Pat Heslop-Harrison;
Kwang-Hyun Cho

Publication type:

Article

A Theoretical Framework for Implementable Nucleic Acids Feedback Systems.

Published in:

Bioengineering (Basel), 2023, v. 10, n. 4, p. 466, doi. 10.3390/bioengineering10040466

By:

Paulino, Nuno M. G.;
Foo, Mathias;
de Greef, Tom F. A.;
Kim, Jongmin;
Bates, Declan G.

Publication type:

Article

A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007849

By:

Bowyer, Jack E.;
Ding, Chloe;
Weinberg, Benjamin H.;
Wong, Wilson W.;
Bates, Declan G.

Publication type:

Article

Restoring circadian gene profiles in clock networks using synthetic feedback control.

Published in:

NPJ Systems Biology & Applications, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41540-022-00216-x

By:

Foo, Mathias;
Akman, Ozgur E.;
Bates, Declan G.

Publication type:

Article

Inhaled sGC Modulator Can Lower PH in Patients With COPD Without Deteriorating Oxygenation.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2018, v. 7, n. 8, p. 491, doi. 10.1002/psp4.12308

By:

Saffaran, Sina;
Wang, Wenfei;
Das, Anup;
Schmitt, Walter;
Becker‐Pelster, Eva‐Maria;
Hardman, Jonathan G.;
Weimann, Gerrit;
Bates, Declan G.

Publication type:

Article

Evaluation of lung recruitment maneuvers in acute respiratory distress syndrome using computer simulation.

Published in:

Critical Care, 2015, v. 19, n. 1, p. 97, doi. 10.1186/s13054-014-0723-6

By:

Das, Anup;
Cole, Oana;
Chikhani, Marc;
Wenfei Wang;
Ali, Tayyba;
Haque, Mainul;
Bates, Declan G.;
Hardman, Jonathan G.

Publication type:

Article

Management of primary blast lung injury: a comparison of airway pressure release versus low tidal volume ventilation.

Published in:

Intensive Care Medicine Experimental, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40635-020-00314-2

By:

Scott, Timothy E.;
Das, Anup;
Haque, Mainul;
Bates, Declan G.;
Hardman, Jonathan G.

Publication type:

Article

Stochastic Noise and Synchronisation during Dictyostelium Aggregation Make cAMP Oscillations Robust.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 11, p. e218, doi. 10.1371/journal.pcbi.0030218

By:

Kim, Jongrae;
Heslop-Harrison, Pat;
Postlethwaite, Ian;
Bates, Declan G.

Publication type:

Article

Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-02898-6

By:

Darlington, Alexander P. S.;
Juhyun Kim;
Jiménez, José I.;
Bates, Declan G.

Publication type:

Article

Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-39

By:

Salerno, Luca;
Cosentino, Carlo;
Merola, Alessio;
Bates, Declan G.;
Amato, Francesco

Publication type:

Article

Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-48

By:

Valeyev, Najl V.;
Bates, Declan G.;
Heslop-Harrison, Pat;
Postlethwaite, Ian;
Kotov, Nikolay V.

Publication type:

Article

Validation of at-the-bedside formulae for estimating ventilator driving pressure during airway pressure release ventilation using computer simulation.

Published in:

2022

By:

Mistry, Sonal;
Das, Anup;
Saffaran, Sina;
Yehya, Nadir;
Scott, Timothy E.;
Chikhani, Marc;
Laffey, John G.;
Hardman, Jonathan G.;
Camporota, Luigi;
Bates, Declan G.

Publication type:

Journal Article

Hemodynamic effects of lung recruitment maneuvers in acute respiratory distress syndrome.

Published in:

2017

By:

Das, Anup;
Haque, Mainul;
Chikhani, Marc;
Cole, Oana;
Wenfei Wang;
Hardman, Jonathan G.;
Bates, Declan G.;
Wang, Wenfei

Publication type:

journal article

Designing an irreversible metabolic switch for scalable induction of microbial chemical production.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23606-x

By:

Mannan, Ahmad A.;
Bates, Declan G.

Publication type:

Article

Structural adaptation and robustness of Dictyostelium ligand-receptor kinetics for low and high ligand concentrations.

Published in:

International Journal of Robust & Nonlinear Control, 2010, v. 20, n. 9, p. 1047, doi. 10.1002/rnc.1587

By:

Kim, Jongrae;
Heslop-Harrison, Pat;
Postlethwaite, Ian;
Bates, Declan G.

Publication type:

Article

Design principles for engineering bacteria to maximise chemical production from batch cultures.

Published in:

Nature Communications, 2025, v. 16, p. 1, doi. 10.1038/s41467-024-55347-y

By:

Mannan, Ahmad A.;
Darlington, Alexander P. S.;
Tanaka, Reiko J.;
Bates, Declan G.

Publication type:

Article

High-fidelity computational simulation to refine strategies for lung-protective ventilation in paediatric acute respiratory distress syndrome.

Published in:

2019

By:

Saffaran, Sina;
Das, Anup;
Hardman, Jonathan G.;
Yehya, Nadir;
Bates, Declan G.

Publication type:

Letter

Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers.

Published in:

PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0161605

By:

Montefusco, Francesco;
Akman, Ozgur E.;
Soyer, Orkun S.;
Bates, Declan G.

Publication type:

Article

Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0153295

By:

Steinacher, Arno;
Bates, Declan G.;
Akman, Ozgur E.;
Soyer, Orkun S.

Publication type:

Article

Airway pressures generated by high flow nasal cannula in patients with acute hypoxemic respiratory failure: a computational study.

Published in:

Respiratory Research, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12931-025-03096-x

By:

Shamohammadi, Hossein;
Weaver, Liam;
Saffaran, Sina;
Tonelli, Roberto;
Laviola, Marianna;
Laffey, John G.;
Camporota, Luigi;
Scott, Timothy E.;
Hardman, Jonathan G.;
Clini, Enrico;
Bates, Declan G.

Publication type:

Article

Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome.

Published in:

Diagnostics (2075-4418), 2023, v. 13, n. 12, p. 2098, doi. 10.3390/diagnostics13122098

By:

Barakat, Chadi S.;
Sharafutdinov, Konstantin;
Busch, Josefine;
Saffaran, Sina;
Bates, Declan G.;
Hardman, Jonathan G.;
Schuppert, Andreas;
Brynjólfsson, Sigurður;
Fritsch, Sebastian;
Riedel, Morris

Publication type:

Article

High risk of patient self-inflicted lung injury in COVID-19 with frequently encountered spontaneous breathing patterns: a computational modelling study.

Published in:

Annals of Intensive Care, 2021, v. 11, n. 1, p. 1, doi. 10.1186/s13613-021-00904-7

By:

Weaver, Liam;
Das, Anup;
Saffaran, Sina;
Yehya, Nadir;
Scott, Timothy E.;
Chikhani, Marc;
Laffey, John G.;
Hardman, Jonathan G.;
Camporota, Luigi;
Bates, Declan G.

Publication type:

Article

Modeling the architecture of the regulatory system controlling methylenomycin production in Streptomyces coelicolor.

Published in:

Journal of Biological Engineering, 2017, v. 11, p. 1, doi. 10.1186/s13036-017-0071-6

By:

Bowyer, Jack E.;
de los Santos, Emmanuel L. C.;
Styles, Kathryn M.;
Fullwood, Alex;
Corre, Christophe;
Bates, Declan G.

Publication type:

Article

Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry.

Published in:

Journal of Biological Engineering, 2016, v. 10, p. 1, doi. 10.1186/s13036-016-0036-1

By:

Foo, Mathias;
Sawlekar, Rucha;
Bates, Declan G.

Publication type:

Article

Machine learning models compared with current clinical indices to predict the outcome of high flow nasal cannula therapy in acute hypoxemic respiratory failure.

Published in:

Critical Care, 2025, v. 29, n. 1, p. 1, doi. 10.1186/s13054-025-05336-4

By:

Yu, Hang;
Saffaran, Sina;
Tonelli, Roberto;
Laffey, John G.;
Esquinas, Antonio M.;
de Lima, Lucas Martins;
Kawano-Dourado, Letícia;
Maia, Israel S.;
Cavalcanti, Alexandre Biasi;
Clini, Enrico;
Bates, Declan G.

Publication type:

Article

A simplified modelling framework facilitates more complex representations of plant circadian clocks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007671

By:

Foo, Mathias;
Bates, Declan G.;
Akman, Ozgur E.

Publication type:

Article

gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3657, doi. 10.1093/bioinformatics/btac376

By:

Legon, Laurence;
Corre, Christophe;
Bates, Declan G;
Mannan, Ahmad A

Publication type:

Article

Scalable reverse‐engineering of gene regulatory networks from time‐course measurements.

Published in:

International Journal of Robust & Nonlinear Control, 2023, v. 33, n. 9, p. 5023, doi. 10.1002/rnc.6044

By:

Montefusco, Francesco;
Procopio, Anna;
Bates, Declan G.;
Amato, Francesco;
Cosentino, Carlo

Publication type:

Article

Translational recoding as a feedback controller: systems approaches reveal polyamine-specific effects on the antizyme ribosomal frameshift.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4587, doi. 10.1093/nar/gkq1349

By:

Rato, Claudia;
Amirova, Svetlana R.;
Bates, Declan G.;
Stansfield, Ian;
Wallace, Heather M.

Publication type:

Article

What links ventilator driving pressure with survival in the acute respiratory distress syndrome? A computational study.

Published in:

2019

By:

Das, Anup;
Camporota, Luigi;
Hardman, Jonathan G.;
Bates, Declan G.

Publication type:

journal article