Works by Bateman, Alex

Results: 135

Metazoan Scc4 Homologs Link Sister Chromatid Cohesion to Cell and Axon Migration Guidance.

Published in:

PLoS Biology, 2006, v. 4, n. 8, p. e242, doi. 10.1371/journal.pbio.0040242

By:

Seitan, Vlad C.;
Banks, Peter;
Laval, Steve;
Majid, Nazia A.;
Dorsett, Dale;
Rana, Amer;
Smith, Jim;
Bateman, Alex;
Krpic, Sanja;
Hostert, Arnd;
Rollins, Robert A.;
Erdjument-Bromage, Hediye;
Tempst, Paul;
Benard, Claire Y.;
Hekimi, Siegfried;
Newbury, Sarah F.;
Strachan, Tom

Publication type:

Article

MEROPS: the peptidase database.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D227, doi. 10.1093/nar/gkp971

By:

Rawlings, Neil D.;
Barrett, Alan J.;
Bateman, Alex

Publication type:

Article

InterPro: the integrative protein signature database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D211, doi. 10.1093/nar/gkn785

By:

Hunter, Sarah;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bork, Peer;
Das, Ujjwal;
Daugherty, Louise;
Duquenne, Lauranne;
Finn, Robert D.;
Gough, Julian;
Haft, Daniel;
Hulo, Nicolas;
Kahn, Daniel;
Kelly, Elizabeth;
Laugraud, Aurélie;
Letunic, Ivica;
Lonsdale, David;
Lopez, Rodrigo

Publication type:

Article

Rfam: updates to the RNA families database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D136, doi. 10.1093/nar/gkn766

By:

Gardner, Paul P.;
Daub, Jennifer;
Tate, John G.;
Nawrocki, Eric P.;
Kolbe, Diana L.;
Lindgreen, Stinus;
Wilkinson, Adam C.;
Finn, Robert D.;
Griffiths-Jones, Sam;
Eddy, Sean R.;
Bateman, Alex

Publication type:

Article

The Pfam protein families database.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D281

By:

Finn, Robert D.;
Tate, John;
Mistry, Jaina;
Coggill, Penny C.;
Sammut, Stephen John;
Hotz, Hans-Rudolf;
Ceric, Goran;
Forslund, Kristoffer;
Eddy, Sean R.;
Sonnhammer, Erik L. L.;
Bateman, Alex

Publication type:

Article

Editorial.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D1

By:

Bateman, Alex

Publication type:

Article

New developments in the InterPro database.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d224, doi. 10.1093/nar/gkl841

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bork, Peer;
Buillard, Virginie;
Cerutti, Lorenzo;
Copley, Richard;
Courcelle, Emmanuel;
Das, Ujjwal;
Daugherty, Louise;
Dibley, Mark;
Finn, Robert;
Fleischmann, Wolfgang;
Gough, Julian;
Haft, Daniel;
Hulo, Nicolas;
Hunter, Sarah

Publication type:

Article

EDITORIAL.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d1, doi. 10.1093/nar/gkj150

By:

Bateman, Alex

Publication type:

Article

Pfam: clans, web tools and services.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d247, doi. 10.1093/nar/gkj149

By:

Finn, Robert D.;
Mistry, Jaina;
Schuster-Böckler, Benjamin;
Griffiths-Jones, Sam;
Hollich, Volker;
Lassmann, Timo;
Moxon, Simon;
Marshall, Mhairi;
Khanna, Ajay;
Durbin, Richard;
Eddy, Sean R.;
Sonnhammer, Erik L. L.;
Bateman, Alex

Publication type:

Article

miRBase: microRNA sequences, targets and gene nomenclature.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d140, doi. 10.1093/nar/gkj112

By:

Griffiths-Jones, Sam;
Grocock, Russell J.;
van Dongen, Stijn;
Bateman, Alex;
Enright, Anton J.

Publication type:

Article

Editorial.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d1

By:

Bateman, Alex

Publication type:

Article

InterPro, progress and status in 2005.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d201

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bradley, Paul;
Bork, Peer;
Bucher, Phillip;
Cerutti, Lorenzo;
Copley, Richard;
Courcelle, Emmanuel;
Das, Ujjwal;
Durbin, Richard;
Fleischmann, Wolfgang;
Gough, Julian;
Haft, Daniel;
Harte, Nicola;
Hulo, Nicolas;
Kahn, Daniel

Publication type:

Article

Rfam: annotating non-coding RNAs in complete genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d121

By:

Griffiths-Jones, Sam;
Moxon, Simon;
Marshall, Mhairi;
Khanna, Ajay;
Eddy, Sean R.;
Bateman, Alex

Publication type:

Article

The Pfam protein families database.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d138

By:

Bateman, Alex;
Coin, Lachlan;
Durbin, Richard;
Finn, Robert D.;
Hollich, Volker;
Griffiths‐Jones, Sam;
Khanna, Ajay;
Marshall, Mhairi;
Moxon, Simon;
Sonnhammer, Erik L. L.;
Studholme, David J.;
Yeats, Corin;
Eddy, Sean R.

Publication type:

Article

Rfam: an RNA family database.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 439, doi. 10.1093/nar/gkg006

By:

Griffiths-Jones, Sam;
Bateman, Alex;
Marshall, Mhairi;
Khanna, Ajay;
Eddy, Sean R.

Publication type:

Article

The InterPro Database, 2003 brings increased coverage and new features.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 315, doi. 10.1093/nar/gkg046

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Barrell, Daniel;
Bateman, Alex;
Binns, David;
Biswas, Margaret;
Bradley, Paul;
Bork, Peer;
Bucher, Phillip;
Copley, Richard R.;
Courcelle, Emmanuel;
Das, Ujjwal;
Durbin, Richard;
Falquet, Laurent;
Fleischmann, Wolfgang;
Griffiths-Jones, Sam;
Haft, Daniel;
Harte, Nicola

Publication type:

Article

The Pfam Protein Families Database.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 1, p. 276, doi. 10.1093/nar/30.1.276

By:

Bateman, Alex;
Birney, Ewan;
Cerruti, Lorenzo;
Durbin, Richard;
Etwiller, Laurence;
Eddy, Sean R.;
Griffiths-Jones, Sam;
Howe, Kevin L.;
Marshall, Mhairi;
Sonnhammer, Erik L. L.

Publication type:

Article

The Pfam Protein Families Database.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 1, p. 263, doi. 10.1093/nar/28.1.263

By:

Bateman, Alex;
Birney, Ewan;
Durbin, Richard;
Eddy, Sean R.;
Howe, Kevin L.;
Sonnhammer, Erik L. L.

Publication type:

Article

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 1, p. 260, doi. 10.1093/nar/27.1.260

By:

Bateman, Alex;
Birney, Ewan;
Durbin, Richard;
Eddy, Sean R.;
Finn, Robert D.;
Sonnhammer, Erik L. L.

Publication type:

Article

Domain atrophy creates rare cases of functional partial protein domains.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0655-8

By:

Prakash, Ananth;
Bateman, Alex

Publication type:

Article

Expanding the repertoire of human tandem repeat RNA-binding proteins.

Published in:

PLoS ONE, 2023, v. 18, n. 9, p. 1, doi. 10.1371/journal.pone.0290890

By:

Ormazábal, Agustín;
Carletti, Matías Sebastián;
Saldaño, Tadeo Enrique;
Gonzalez Buitron, Martín;
Marchetti, Julia;
Palopoli, Nicolas;
Bateman, Alex

Publication type:

Article

How to use the MEROPS database and website to help understand peptidase specificity.

Published in:

Protein Science: A Publication of the Protein Society, 2021, v. 30, n. 1, p. 83, doi. 10.1002/pro.3948

By:

Rawlings, Neil D.;
Bateman, Alex

Publication type:

Article

Discovery of fibrillar adhesins across bacterial species.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07586-2

By:

Monzon, Vivian;
Lafita, Aleix;
Bateman, Alex

Publication type:

Article

Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 5, p. 1, doi. 10.15252/msb.20209880

By:

Smyshlyaev, Georgy;
Bateman, Alex;
Barabas, Orsolya

Publication type:

Article

Pfam 10 years on: 10000 families and still growing.

Published in:

Briefings in Bioinformatics, 2008, v. 9, n. 3, p. 210, doi. 10.1093/bib/bbn010

By:

Sammut, Stephen John;
Finn, Robert D.;
Bateman, Alex

Publication type:

Article

HMM-based databases in InterPro.

Published in:

Briefings in Bioinformatics, 2002, v. 3, n. 3, p. 236, doi. 10.1093/bib/3.3.236

By:

Bateman, Alex;
Haft, Daniel H.

Publication type:

Article

Distant homology recognition using structural classification of proteins.

Published in:

Proteins, 1997, v. 29, n. S1, p. 105, doi. 10.1002/(SICI)1097-0134(1997)1+<105::AID-PROT14>3.0.CO;2-S

By:

Murzin, Alexey G.;
Bateman, Alex

Publication type:

Article

ISCB Computational Biology Wikipedia Competition.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003242

By:

Bateman, Alex;
Kelso, Janet;
Mietchen, Daniel;
Macintyre, Geoff;
Di Domenico, Tomás;
Abeel, Thomas;
Logan, Darren W.;
Radivojac, Predrag;
Rost, Burkhard

Publication type:

Article

Ten Simple Rules for Editing Wikipedia.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000941

By:

Logan, Darren W.;
Sandal, Massimo;
Gardner, Paul P.;
Manske, Magnus;
Bateman, Alex

Publication type:

Article

Ten Simple Rules for Chairing a Scientific Session.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000517

By:

Bateman, Alex;
Bourne, Philip E.

Publication type:

Article

Time to underpin Wikipedia wisdom.

Published in:

2010

By:

Bateman, Alex;
Logan, Darren W.

Publication type:

Letter

New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor.

Published in:

BMC Microbiology, 2003, v. 3, p. 1

By:

Yeats, Corin;
Bentley, Stephen;
Bateman, Alex

Publication type:

Article

Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13577-5

By:

Bortnov, Valeriu;
Tonelli, Marco;
Lee, Woonghee;
Lin, Ziqing;
Annis, Douglas S.;
Demerdash, Omar N.;
Bateman, Alex;
Mitchell, Julie C.;
Ge, Ying;
Markley, John L.;
Mosher, Deane F.

Publication type:

Article

Bioimage informatics: a new category in Bioinformatics.

Published in:

Bioinformatics, 2012, v. 28, n. 8, p. 1057, doi. 10.1093/bioinformatics/bts111

By:

Peng, Hanchuan;
Bateman, Alex;
Valencia, Alfonso;
Wren, Jonathan D.

Publication type:

Article

The rise and fall of supervised machine learning techniques.

Published in:

2011

By:

Jensen, Lars Juhl;
Bateman, Alex

Publication type:

Editorial

LOTUS, a new domain associated with small RNA pathways in the germline.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1140, doi. 10.1093/bioinformatics/btq122

By:

Callebaut, Isabelle;
Mornon, Jean-Paul;
Bateman, Alex

Publication type:

Article

Curators of the world unite: the International Society of Biocuration.

Published in:

2010

By:

Bateman, Alex

Publication type:

Editorial

Cloud computing.

Published in:

Bioinformatics, 2009, v. 25, n. 12, p. 1475, doi. 10.1093/bioinformatics/btp274

By:

Alex Bateman;
Matt Wood

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2009, v. 25, n. 4, p. 429, doi. 10.1093/bioinformatics/btp037

By:

Alex Bateman;
John Quackenbush

Publication type:

Article

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.

Published in:

Bioinformatics, 2009, v. 25, n. 2, p. 159, doi. 10.1093/bioinformatics/btn595

By:

Alex Bateman;
Robert D. Finn;
Peter J. Sims;
Therese Wiedmer;
Andreas Biegert;
Johannes SÃ¶ding

Publication type:

Article

Databases, data tombs and dust in the wind.

Published in:

Bioinformatics, 2008, v. 24, n. 19, p. 2127, doi. 10.1093/bioinformatics/btn464

By:

Jonathan D. Wren;
Alex Bateman

Publication type:

Article

SCOOP: a simple method for identification of novel protein superfamily relationships.

Published in:

Bioinformatics, 2007, v. 23, n. 7, p. 809, doi. 10.1093/bioinformatics/btm034

By:

Alex Bateman

Publication type:

Article

EDITORIAL.

Published in:

Bioinformatics, 2007, v. 23, n. 2, p. 133

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

Structural genomics meets computational biology.

Published in:

Bioinformatics, 2006, v. 22, n. 19, p. 2319, doi. 10.1093/bioinformatics/btl426

By:

Bateman, Alex;
Valencia, Alfonso

Publication type:

Article

Software patents in Bioinformatics.

Published in:

Bioinformatics, 2006, v. 22, n. 12, p. 1415, doi. 10.1093/bioinformatics/btl166

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

BioinformaticsThe new home for protein sequence motifs.

Published in:

Bioinformatics, 2006, v. 22, n. 1, p. 2, doi. 10.1093/bioinformatics/bti755

By:

Alex Bateman

Publication type:

Article

An update from the Bioinformatics Editors.

Published in:

Bioinformatics, 2005, v. 21, n. 24, p. 4319, doi. 10.1093/bioinformatics/bti768

By:

Alex Bateman;
Alfonso Valencia

Publication type:

Article

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation.

Published in:

Bioinformatics, 2005, v. 21, n. 8, p. 1301, doi. 10.1093/bioinformatics/bti206

By:

Alex Bateman

Publication type:

Article

INCREASING THE IMPACT OF BIOINFORMATICS.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. 1, doi. 10.1093/bioinformatics/bti185

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

New Leadership for Bioinformatics.

Published in:

Bioinformatics, 2004, v. 20, n. 12, p. 1821, doi. 10.1093/bioinformatics/bth403

By:

Alex Bateman;
Alfonso Valencia

Publication type:

Article