Works matching AU Bateman, Alex

Results: 135

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3454, doi. 10.1093/bioinformatics/btx439

By:

Poux, Sylvain;
Arighi, Cecilia N.;
Magrane, Michele;
Bateman, Alex;
Chih-Hsuan Wei;
Zhiyong Lu;
Boutet, Emmanuel;
Hema Bye-A.-Jee;
Famiglietti, Maria Livia;
Roechert, Bernd

Publication type:

Article

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2264, doi. 10.1093/bioinformatics/btw114

By:

Doğan, Tunca;
MacDougall, Alistair;
Saidi, Rabie;
Poggioli, Diego;
Bateman, Alex;
O'Donovan, Claire;
Martin, Maria J.

Publication type:

Article

Bioimage informatics: a new category in Bioinformatics.

Published in:

Bioinformatics, 2012, v. 28, n. 8, p. 1057, doi. 10.1093/bioinformatics/bts111

By:

Peng, Hanchuan;
Bateman, Alex;
Valencia, Alfonso;
Wren, Jonathan D.

Publication type:

Article

The rise and fall of supervised machine learning techniques.

Published in:

2011

By:

Jensen, Lars Juhl;
Bateman, Alex

Publication type:

Editorial

LOTUS, a new domain associated with small RNA pathways in the germline.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1140, doi. 10.1093/bioinformatics/btq122

By:

Callebaut, Isabelle;
Mornon, Jean-Paul;
Bateman, Alex

Publication type:

Article

Curators of the world unite: the International Society of Biocuration.

Published in:

2010

By:

Bateman, Alex

Publication type:

Editorial

Cloud computing.

Published in:

Bioinformatics, 2009, v. 25, n. 12, p. 1475, doi. 10.1093/bioinformatics/btp274

By:

Alex Bateman;
Matt Wood

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2009, v. 25, n. 4, p. 429, doi. 10.1093/bioinformatics/btp037

By:

Alex Bateman;
John Quackenbush

Publication type:

Article

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.

Published in:

Bioinformatics, 2009, v. 25, n. 2, p. 159, doi. 10.1093/bioinformatics/btn595

By:

Alex Bateman;
Robert D. Finn;
Peter J. Sims;
Therese Wiedmer;
Andreas Biegert;
Johannes SÃ¶ding

Publication type:

Article

Databases, data tombs and dust in the wind.

Published in:

Bioinformatics, 2008, v. 24, n. 19, p. 2127, doi. 10.1093/bioinformatics/btn464

By:

Jonathan D. Wren;
Alex Bateman

Publication type:

Article

SCOOP: a simple method for identification of novel protein superfamily relationships.

Published in:

Bioinformatics, 2007, v. 23, n. 7, p. 809, doi. 10.1093/bioinformatics/btm034

By:

Alex Bateman

Publication type:

Article

EDITORIAL.

Published in:

Bioinformatics, 2007, v. 23, n. 2, p. 133

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

Structural genomics meets computational biology.

Published in:

Bioinformatics, 2006, v. 22, n. 19, p. 2319, doi. 10.1093/bioinformatics/btl426

By:

Bateman, Alex;
Valencia, Alfonso

Publication type:

Article

Software patents in Bioinformatics.

Published in:

Bioinformatics, 2006, v. 22, n. 12, p. 1415, doi. 10.1093/bioinformatics/btl166

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

BioinformaticsThe new home for protein sequence motifs.

Published in:

Bioinformatics, 2006, v. 22, n. 1, p. 2, doi. 10.1093/bioinformatics/bti755

By:

Alex Bateman

Publication type:

Article

An update from the Bioinformatics Editors.

Published in:

Bioinformatics, 2005, v. 21, n. 24, p. 4319, doi. 10.1093/bioinformatics/bti768

By:

Alex Bateman;
Alfonso Valencia

Publication type:

Article

Pepsin homologues in bacteria.

Published in:

BMC Genomics, 2009, v. 10, p. 437, doi. 10.1186/1471-2164-10-437

By:

Rawlings, Neil D.;
Bateman, Alex

Publication type:

Article

Ten simple rules to make your computing more environmentally sustainable.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009324

By:

Lannelongue, Loïc;
Grealey, Jason;
Bateman, Alex;
Inouye, Michael

Publication type:

Article

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation.

Published in:

Bioinformatics, 2005, v. 21, n. 8, p. 1301, doi. 10.1093/bioinformatics/bti206

By:

Alex Bateman

Publication type:

Article

INCREASING THE IMPACT OF BIOINFORMATICS.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. 1, doi. 10.1093/bioinformatics/bti185

By:

Alfonso Valencia;
Alex Bateman

Publication type:

Article

New Leadership for Bioinformatics.

Published in:

Bioinformatics, 2004, v. 20, n. 12, p. 1821, doi. 10.1093/bioinformatics/bth403

By:

Alex Bateman;
Alfonso Valencia

Publication type:

Article

QuickTree: building huge Neighbour-Joining trees of protein sequences.

Published in:

Bioinformatics, 2002, v. 18, n. 11, p. 1546, doi. 10.1093/bioinformatics/18.11.1546

By:

Howe, Kevin;
Bateman, Alex;
Durbin, Richard

Publication type:

Article

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.

Published in:

Bioinformatics, 2002, v. 18, n. 9, p. 1243, doi. 10.1093/bioinformatics/18.9.1243

By:

Griffiths-Jones, Sam;
Bateman, Alex

Publication type:

Article

The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 2, p. 124, doi. 10.1107/S2059798319016747

By:

Xu, Emma-Ruoqi;
Lafita, Aleix;
Bateman, Alex;
Hyvönen, Marko

Publication type:

Article

The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057848

By:

Eberhardt, Ruth Y.;
Bartholdson, S. Josefin;
Punta, Marco;
Bateman, Alex

Publication type:

Article

The YARHG Domain: An Extracellular Domain in Search of a Function.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0035575

By:

Coggill, Penny;
Bateman, Alex

Publication type:

Article

The Characterisation of Three Types of Genes that Overlie Copy Number Variable Regions.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0014814

By:

Woodwark, Cara;
Bateman, Alex

Publication type:

Article

Dosage Sensitivity Shapes the Evolution of Copy-Number Varied Regions.

Published in:

PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009474

By:

Schuster-Böckler, Benjamin;
Conrad, Donald;
Bateman, Alex

Publication type:

Article

Structure and function of DNA transposition assemblies involved in antibiotic resistance spreading.

Published in:

FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.0I103

By:

Barabas, Orsolya;
Smyshlyaev, Georgy;
Isbilir, Buse;
Khedkar, Supriya;
Rojas‐Cordova, Carlos;
Bateman, Alex G.;
Bork, Peer

Publication type:

Article

New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor.

Published in:

BMC Microbiology, 2003, v. 3, p. 1

By:

Yeats, Corin;
Bentley, Stephen;
Bateman, Alex

Publication type:

Article

Discovery of fibrillar adhesins across bacterial species.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07586-2

By:

Monzon, Vivian;
Lafita, Aleix;
Bateman, Alex

Publication type:

Article

Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 5, p. 1, doi. 10.15252/msb.20209880

By:

Smyshlyaev, Georgy;
Bateman, Alex;
Barabas, Orsolya

Publication type:

Article

Caenorhabditis elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene Expression.

Published in:

Genetics, 2020, v. 215, n. 4, p. 1039, doi. 10.1534/genetics.120.302923

By:

Walton, Sophie J.;
Han Wang;
Quintero-Cadena, Porfirio;
Bateman, Alex;
Sternberg, Paul W.

Publication type:

Article

Comparative Analysis of the Polycystic Kidney Disease 1 (PKD1) Gene Reveals an Integral Membrane Glycoprotein with Multiple Evolutionary Conserved Domains.

Published in:

Human Molecular Genetics, 1997, v. 6, n. 9, p. 1483, doi. 10.1093/hmg/6.9.1483

By:

Sandford, Richard;
Sgotto, Barbara;
Aparicio, Sam;
Brenner, Sydney;
Vaudin, Mark;
Wilson, Richard K.;
Chissoe, Stephanie;
Pepin, Kym;
Bateman, Alex;
Chothia, Cyrus;
Hughes, Jim;
Harris, Peter

Publication type:

Article

The ENTH domain

Published in:

FEBS Letters, 2002, v. 513, n. 1, p. 11, doi. 10.1016/S0014-5793(01)03306-3

By:

De Camilli, Pietro;
Chen, Hong;
Hyman, Joel;
Panepucci, Ezequiel;
Bateman, Alex;
Brunger, Axel T.

Publication type:

Article

CASP2 knowledge-based approach to distant homology recognition and fold prediction in CASP4.

Published in:

Proteins, 2001, v. 45, n. S5, p. 76, doi. 10.1002/prot.10037

By:

Murzin, Alexey G.;
Bateman, Alex

Publication type:

Article

Distant homology recognition using structural classification of proteins.

Published in:

Proteins, 1997, v. 29, n. S1, p. 105, doi. 10.1002/(SICI)1097-0134(1997)1+<105::AID-PROT14>3.0.CO;2-S

By:

Murzin, Alexey G.;
Bateman, Alex

Publication type:

Article

Metazoan Scc4 Homologs Link Sister Chromatid Cohesion to Cell and Axon Migration Guidance.

Published in:

PLoS Biology, 2006, v. 4, n. 8, p. e242, doi. 10.1371/journal.pbio.0040242

By:

Seitan, Vlad C.;
Banks, Peter;
Laval, Steve;
Majid, Nazia A.;
Dorsett, Dale;
Rana, Amer;
Smith, Jim;
Bateman, Alex;
Krpic, Sanja;
Hostert, Arnd;
Rollins, Robert A.;
Erdjument-Bromage, Hediye;
Tempst, Paul;
Benard, Claire Y.;
Hekimi, Siegfried;
Newbury, Sarah F.;
Strachan, Tom

Publication type:

Article

Keeping it in the family: using protein family templates to rescue low confidence AlphaFold2 models.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae188

By:

Costa, Francesco;
Blum, Matthias;
Bateman, Alex

Publication type:

Article

Investigation of protein family relationships with deep learning.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae132

By:

Ponamareva, Irina;
Andreeva, Antonina;
Bileschi, Maxwell L;
Colwell, Lucy;
Bateman, Alex

Publication type:

Article

Perspectives on tracking data reuse across biodata resources.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae057

By:

Ross, Karen E;
Bastian, Frederic B;
Buys, Matt;
Cook, Charles E;
D'Eustachio, Peter;
Harrison, Melissa;
Hermjakob, Henning;
Li, Donghui;
Lord, Phillip;
Natale, Darren A;
Peters, Bjoern;
Sternberg, Paul W;
Su, Andrew I;
Thakur, Matthew;
Thomas, Paul D;
Bateman, Alex;
Consortium, and the UniProt

Publication type:

Article

MBDBMetrics: an online metrics tool to measure the impact of biological data resources.

Published in:

Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad180

By:

Insana, Giuseppe;
Ignatchenko, Alex;
Martin, Maria;
Bateman, Alex;
Consortium, UniProt

Publication type:

Article

Nightingale: web components for protein feature visualization.

Published in:

Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad064

By:

Salazar, Gustavo A;
Luciani, Aurélien;
Watkins, Xavier;
Kandasaamy, Swaathi;
Rice, Daniel L;
Blum, Matthias;
Bateman, Alex;
Martin, Maria

Publication type:

Article

Reciprocal best structure hits: using AlphaFold models to discover distant homologues.

Published in:

Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac072

By:

Monzon, Vivian;
Paysan-Lafosse, Typhaine;
Wood, Valerie;
Bateman, Alex

Publication type:

Article

Folding the unfoldable: using AlphaFold to explore spurious proteins.

Published in:

Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbab043

By:

Monzon, Vivian;
Haft, Daniel H;
Bateman, Alex

Publication type:

Article

Editorial.

Published in:

Bioinformatics Advances, 2021, v. 1, n. 1, p. 1, doi. 10.1093/bioadv/vbab001

By:

Bateman, Alex;
Lengauer, Thomas

Publication type:

Article

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 642, doi. 10.1093/bib/bbaa232

By:

Hufsky, Franziska;
Lamkiewicz, Kevin;
Almeida, Alexandre;
Aouacheria, Abdel;
Arighi, Cecilia;
Bateman, Alex;
Baumbach, Jan;
Beerenwinkel, Niko;
Brandt, Christian;
Cacciabue, Marco;
Chuguransky, Sara;
Drechsel, Oliver;
Finn, Robert D;
Fritz, Adrian;
Fuchs, Stephan;
Hattab, Georges;
Hauschild, Anne-Christin;
Heider, Dominik;
Hoffmann, Marie;
Hölzer, Martin

Publication type:

Article

Pfam 10 years on: 10000 families and still growing.

Published in:

Briefings in Bioinformatics, 2008, v. 9, n. 3, p. 210, doi. 10.1093/bib/bbn010

By:

Sammut, Stephen John;
Finn, Robert D.;
Bateman, Alex

Publication type:

Article

HMM-based databases in InterPro.

Published in:

Briefings in Bioinformatics, 2002, v. 3, n. 3, p. 236, doi. 10.1093/bib/3.3.236

By:

Bateman, Alex;
Haft, Daniel H.

Publication type:

Article

roadmap for the functional annotation of protein families: a community perspective.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac062

By:

Crécy-lagard, Valérie de;
Hegedus, Rocio Amorin de;
Arighi, Cecilia;
Babor, Jill;
Bateman, Alex;
Blaby, Ian;
Blaby-Haas, Crysten;
Bridge, Alan J;
Burley, Stephen K;
Cleveland, Stacey;
Colwell, Lucy J;
Conesa, Ana;
Dallago, Christian;
Danchin, Antoine;
Waard, Anita de;
Deutschbauer, Adam;
Dias, Raquel;
Ding, Yousong;
Fang, Gang;
Friedberg, Iddo

Publication type:

Article