Works by Bastiaansen, John W. M.

Results: 41

Use of genomic information to exploit genotype-by-environment interactions for body weight of broiler chicken in bio-secure and production environments.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0493-3

By:

Chu, Thinh T.;
Bastiaansen, John W. M.;
Berg, Peer;
Romé, Hélène;
Marois, Danye;
Henshall, John;
Jensen, Just

Publication type:

Article

Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0412-z

By:

Marques, Daniele B. D.;
Bastiaansen, John W. M.;
Broekhuijse, Marleen L. W. J.;
Lopes, Marcos S.;
Knol, Egbert F.;
Harlizius, Barbara;
Guimarães, Simone E. F.;
Silva, Fabyano F.;
Lopes, Paulo S.

Publication type:

Article

The impact of genome editing on the introduction of monogenic traits in livestock.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0389-7

By:

Bastiaansen, John W. M.;
Bovenhuis, Henk;
Groenen, Martien A. M.;
Megens, Hendrik-Jan;
Mulder, Han A.

Publication type:

Article

Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0350-1

By:

Sevillano, Claudia A.;
Vandenplas, Jeremie;
Bastiaansen, John W. M.;
Bergsma, Rob;
Calus, Mario P. L.

Publication type:

Article

Genomic selection for crossbred performance accounting for breed-specific effects.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0328-z

By:

Lopes, Marcos S.;
Bovenhuis, Henk;
Hidalgo, André M.;
van Arendonk, Johan A. M.;
Knol, Egbert F.;
Bastiaansen, John W. M.

Publication type:

Article

Assigning breed origin to alleles in crossbred animals.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0240-y

By:

Vandenplas, Jérémie;
Calus, Mario P. L.;
Sevillano, Claudia A.;
Windig, Jack J.;
Bastiaansen, John W. M.

Publication type:

Article

Empirical determination of breed-of-origin of alleles in three-breed cross pigs.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0234-9

By:

Sevillano, Claudia A.;
Vandenplas, Jeremie;
Bastiaansen, John W. M.;
Calus, Mario P. L.

Publication type:

Article

Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0189-x

By:

Verardo, Lucas L.;
Silva, Fabyano F.;
Lopes, Marcos S.;
Madsen, Ole;
Bastiaansen, John W. M.;
Knol, Egbert F.;
Kelly, Mathew;
Varona, Luis;
Lopes, Paulo S.;
Guimarães, Simone E. F.

Publication type:

Article

Genome-wide association study using deregressed breeding values for cryptorchidism and scrotal/ inguinal hernia in two pig lines.

Published in:

Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-015-0096-6

By:

Sevillano, Claudia A.;
Lopes, Marcos S.;
Harlizius, Barbara;
Hanenberg, Egiel H. A. T.;
Knol, Egbert F.;
Bastiaansen, John W. M.

Publication type:

Article

Standard error of the genetic correlation: how much data do we need to estimate a purebred-crossbred genetic correlation?

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0079-z

By:

Bijma, Piter;
Bastiaansen, John W. M.

Publication type:

Article

Optimizing design to estimate genetic correlations between environments with common environmental effects.

Published in:

Journal of Animal Science, 2020, v. 98, n. 2, p. N.PAG, doi. 10.1093/jas/skaa034

By:

Lozano-Jaramillo, Maria;
Komen, Hans;
Wientjes, Yvonne C J;
Mulder, Han A;
Bastiaansen, John W M

Publication type:

Article

Genetic correlations between growth performance and carcass traits of purebred and crossbred pigs raised in tropical and temperate climates<sup />.

Published in:

Journal of Animal Science, 2019, v. 97, n. 9, p. 3648, doi. 10.1093/jas/skz229

By:

Godinho, Rodrigo M;
Bergsma, Rob;
Silva, Fabyano F;
Sevillano, Claudia A;
Knol, Egbert F;
Komen, Hans;
Guimarães, Simone Eliza F;
Lopes, Marcos S;
Bastiaansen, John W M

Publication type:

Article

Response to a selection index including environmental costs and risk preferences of producers 1.

Published in:

Journal of Animal Science, 2019, v. 97, n. 1, p. 156, doi. 10.1093/jas/sky400

By:

Ali, Beshir M;
Bastiaansen, John W M;
Mey, Yann de;
Lansink, Alfons G J M Oude

Publication type:

Article

On the relationship between an Asian haplotype on chromosome 6 that reduces and rostenone levels in boars and the differential expression of SULT2A1 in the testis.

Published in:

BMC Genetics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2156-15-4

By:

Hidalgo, André M;
Bastiaansen, John W. M.;
Harlizius, Barbara;
Megens, Hendrik-Jan;
Madsen, Ole;
Crooijmans, Richard P. M. A;
Groenen, Martien A. M.

Publication type:

Article

Whole genome QTL mapping for growth, meat quality and breast meat yield traits in turkey.

Published in:

BMC Genetics, 2011, v. 12, n. 1, p. 61, doi. 10.1186/1471-2156-12-61

By:

Aslam, Muhammad L.;
Bastiaansen, John W. M.;
Crooijmans, Richard P. M. A.;
Vereijken, Addie;
Groenen, Martien A. M.

Publication type:

Article

Genetic variances, heritabilities and maternal effects on body weight, breast meat yield, meat quality traits and the shape of the growth curve in turkey birds.

Published in:

BMC Genetics, 2011, v. 12, n. 1, p. 14, doi. 10.1186/1471-2156-12-14

By:

Aslam, Muhammad L.;
Bastiaansen, John W. M.;
Crooijmans, Richard P. M. A.;
Ducro, Bart J.;
Vereijken, Addie;
Groenen, Martien A. M.

Publication type:

Article

QTLMAS 2009: simulated dataset.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1186/1753-6561-4-S1-S3

By:

Coster, Albart;
Bastiaansen, John W. M.;
Calus, Mario P. L.;
Maliepaard, Chris;
Bink, Marco C. A. M.

Publication type:

Article

Comparison of analyses of the QTLMAS XIII common dataset. II: QTL analysis.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.3382/ps.2008-00317

By:

Maliepaard, Chris;
Bastiaansen, John W. M.;
Calus, Mario P. L.;
Coster, Albart;
Bink, Marco C. A. M.

Publication type:

Article

Comparison of analyses of the QTLMAS XIII common dataset. I: genomic selection.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1038/nrg701

By:

Bastiaansen, John W. M.;
Bink, Marco C. A. M.;
Coster, Albart;
Maliepaard, Chris;
Calus, Mario P. L.

Publication type:

Article

Efficient detection of QTL with large effects in a simulated pig-type pedigree using selective genotyping.

Published in:

BMC Proceedings, 2009, v. 3, p. 1

By:

Heuven, Henri C. M.;
Bastiaansen, John W. M.;
van den Berg, Stéphanie M.

Publication type:

Article

Estimation of Additive, Dominance, and Imprinting Genetic Variance Using Genomic Data.

Published in:

G3: Genes | Genomes | Genetics, 2015, v. 5, n. 12, p. 2629, doi. 10.1534/g3.115.019513

By:

Lopes, Marcos S.;
Bastiaansen, John W. M.;
Janss, Luc;
Knol, Egbert F.;
Bovenhuis, Henk

Publication type:

Article

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs.

Published in:

G3: Genes | Genomes | Genetics, 2015, v. 5, n. 8, p. 1575, doi. 10.1534/g3.115.018119

By:

Hidalgo, André M.;
Bastiaansen, John W. M.;
Lopes, Marcos S.;
Harlizius, Barbara;
Groenen, Martien A. M.;
de Koning, Dirk-Jan

Publication type:

Article

Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures.

Published in:

Genetics Selection Evolution, 2012, v. 44, n. 3, p. 1, doi. 10.1186/1297-9686-44-3

By:

Bastiaansen, John W. M.;
Coster, Albart;
Calus, Mario P. L.;
van Arendonk, Johan A. M.;
Bovenhuis, Henk

Publication type:

Article

Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures.

Published in:

Genetics Selection Evolution, 2012, v. 44, n. 1, p. 1, doi. 10.1186/1297-9686-44-3

By:

Bastiaansen, John W. M.;
Coster, Albart;
Calus, Mario P. L.;
van Arendonk, Johan A. M.;
Bovenhuis, Henk

Publication type:

Article

Identification of Mendelian inconsistencies between SNP and pedigree information of sibs.

Published in:

Genetics Selection Evolution, 2011, v. 43, n. 10, p. 1, doi. 10.1186/1297-9686-43-34

By:

Calus, Mario P. L.;
Mulder, Han A.;
Bastiaansen, John W. M.

Publication type:

Article

Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance.

Published in:

Genetics Selection Evolution, 2010, v. 42, n. 3, p. 1, doi. 10.1186/1297-9686-42-9

By:

Coster, Albart;
Bastiaansen, John W. M.;
Calus, Mario P. L.;
van Arendonk, Johan A. M.;
Bovenhuis, Henk

Publication type:

Article

Species and Phenotypic Distribution Models Reveal Population Differentiation in Ethiopian Indigenous Chickens.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.723360

By:

Kebede, Fasil Getachew;
Komen, Hans;
Dessie, Tadelle;
Alemu, Setegn Worku;
Hanotte, Olivier;
Bastiaansen, John W. M.

Publication type:

Article

Accuracy of imputation using the most common sires as reference population in layer chickens.

Published in:

BMC Genetics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12863-015-0253-5

By:

Heidaritabar, Marzieh;
Calus, Mario P. L.;
Vereijken, Addie;
Groenen, Martien A. M.;
Bastiaansen, John W. M.

Publication type:

Article

A nonsensemutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1936-z

By:

Ducro, Bart J.;
Schurink, Anouk;
Bastiaansen, John W. M.;
Boegheim, Iris J. M.;
van Steenbeek, Frank G.;
Vos-Loohuis, Manon;
Nijman, Isaac J.;
Monroe, Glen R.;
Hellinga, Ids;
Dibbits, Bert W.;
Back, Willem;
Leegwater, Peter A. J.

Publication type:

Article

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-449

By:

Paudel, Yogesh;
Madsen, Ole;
Megens, Hendrik-Jan;
Frantz, Laurent A. F.;
Bosse, Mirte;
Bastiaansen, John .W. M;
Crooijmans, Richard P. M. A;
Groenen, Martien A. M.

Publication type:

Article

Multi-environment performance analysis identifies more productive and widely adapted chicken breeds for smallholder farmers.

Published in:

Frontiers in Sustainable Food Systems, 2024, p. 1, doi. 10.3389/fsufs.2024.1441295

By:

Kebede, Fasil Getachew;
Komen, Hans;
Dessie, Tadelle;
Hanotte, Olivier;
Kemp, Steve;
Alemu, Setegn Worku;
Bastiaansen, John W. M.

Publication type:

Article

Multi-environment performance analysis identifies more productive and widely adapted chicken breeds for smallholder farmers.

Published in:

Frontiers in Sustainable Food Systems, 2024, p. 1, doi. 10.3389/fsufs.2024.1441295

By:

Kebede, Fasil Getachew;
Komen, Hans;
Dessie, Tadelle;
Hanotte, Olivier;
Kemp, Steve;
Alemu, Setegn Worku;
Bastiaansen, John W. M.

Publication type:

Article

Growth Performance, Carcass and Pork Quality Traits of Growing-Finishing Pigs with High and Low Breeding Values for Residual Feed Intake Fed Diets with Macauba (Acrocomia aculeata) Pulp as Alternative Raw Material.

Published in:

Agriculture; Basel, 2022, v. 12, n. 11, p. 1860, doi. 10.3390/agriculture12111860

By:

Moreira, Vinicius E.;
Veroneze, Renata;
Saraiva, Alysson;
Duarte, Marcio de S.;
Guimaraes, Simone E. F.;
Lopes, Marcos S.;
Bastiaansen, John W. M.;
Santos, Gabryele A.;
Campos, Lorena D.;
Campos, Paulo H. R. F.

Publication type:

Article

Genotype by Environment Interactions (G*E) of Chickens Tested in Ethiopia Using Body Weight as a Performance Trait.

Published in:

Animals (2076-2615), 2023, v. 13, n. 19, p. 3121, doi. 10.3390/ani13193121

By:

de Kinderen, Maud A. J.;
Sölkner, Johann;
Mészáros, Gábor;
Alemu, Setegn W.;
Esatu, Wondmeneh;
Bastiaansen, John W. M.;
Komen, Hans;
Dessie, Tadelle

Publication type:

Article

Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus).

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07486-5

By:

Yu, Xiaofei;
Megens, Hendrik-Jan;
Mengistu, Samuel Bekele;
Bastiaansen, John W. M.;
Mulder, Han A.;
Benzie, John A. H.;
Groenen, Martien A. M.;
Komen, Hans

Publication type:

Article

A Genome-Wide Association Study Reveals Dominance Effects on Number of Teats in Pigs.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105867

By:

Lopes, Marcos S.;
Bastiaansen, John W. M.;
Harlizius, Barbara;
Knol, Egbert F.;
Bovenhuis, Henk

Publication type:

Article

Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039191

By:

McKnite, Autumn M.;
Perez-Munoz, Maria Elisa;
Lu Lu;
Williams, Evan G.;
Brewer, Simon;
Andreux, Pénélope A.;
Bastiaansen, John W. M.;
Wang, Xusheng;
Kachman, Stephen D.;
Auwerx, Johan;
Williams, Robert W.;
Benson, Andrew K.;
Peterson, Daniel A.;
Ciobanu, Daniel C.

Publication type:

Article

Correction to: Use of genomic information to exploit genotype-by-environment interactions for body weight of broiler chicken in bio-secure and production environments.

Published in:

2019

By:

Chu, Thinh T.;
Bastiaansen, John W. M.;
Berg, Peer;
Romé, Hélène;
Marois, Danye;
Henshall, John;
Jensen, Just

Publication type:

Correction Notice

Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0509-z

By:

Chu, Thinh T.;
Bastiaansen, John W. M.;
Berg, Peer;
Komen, Hans

Publication type:

Article

Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3186-0

By:

Leegwater, Peter A.;
Vos-Loohuis, Manon;
Ducro, Bart J.;
Boegheim, Iris J.;
van Steenbeek, Frank G.;
Nijman, Isaac J.;
Monroe, Glen R.;
Bastiaansen, John W. M.;
Dibbits, Bert W.;
van de Goor, Leanne H.;
Hellinga, Ids;
Back, Willem;
Schurink, Anouk

Publication type:

Article

A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the Turkey and Chicken genomes.

Published in:

BMC Genomics, 2010, v. 11, p. 647, doi. 10.1186/1471-2164-11-647

By:

Aslam, Muhammad L.;
Bastiaansen, John W. M.;
Crooijmans, Richard P. M. A.;
Vereijken, Addie;
Megens, Hendrik-Jan;
Groenen, Martien A. M.

Publication type:

Article