Works by Baryawno, Ninib

Results: 26

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1449-6

By:

Petukhov, Viktor;
Guo, Jimin;
Baryawno, Ninib;
Severe, Nicolas;
Scadden, David T.;
Samsonova, Maria G.;
Kharchenko, Peter V.

Publication type:

Article

Bone marrow drives central nervous system regeneration after radiation injury.

Published in:

2018

By:

Dietrich, Jorg;
Baryawno, Ninib;
Nayyar, Naema;
Valtis, Yannis K.;
Yang, Betty;
Ly, Ina;
Besnard, Antoine;
Severe, Nicolas;
Gustafsson, Karin U.;
Andronesi, Ovidiu C.;
Batchelor, Tracy T.;
Sahay, Amar;
Scadden, David T.

Publication type:

journal article

Bone marrow drives central nervous system regeneration after radiation injury.

Published in:

2018

By:

Dietrich, Jorg;
Baryawno, Ninib;
Nayyar, Naema;
Valtis, Yannis K.;
Yang, Betty;
Ly, Ina;
Besnard, Antoine;
Severe, Nicolas;
Gustafsson, Karin U.;
Andronesi, Ovidiu C.;
Batchelor, Tracy T.;
Sahay, Amar;
Scadden, David T.

Publication type:

journal article

Amino acid-insensitive mTORC1 regulation enables nutritional stress resilience in hematopoietic stem cells.

Published in:

2017

By:

Kalaitzidis, Demetrios;
Dongjun Lee;
Efeyan, Alejo;
Kfoury, Youmna;
Nayyar, Naema;
Sykes, David B.;
Mercier, Francois E.;
Papazian, Ani;
Baryawno, Ninib;
Victora, Gabriel D.;
Neuberg, Donna;
Sabatini, David M.;
Scadden, David T.;
Lee, Dongjun

Publication type:

journal article

Detection of human cytomegalovirus in medulloblastomas reveals a potential therapeutic target.

Published in:

2011

By:

Baryawno, Ninib;
Rahbar, Afsar;
Wolmer-Solberg, Nina;
Taher, Chato;
Odeberg, Jenny;
Darabi, Anna;
Khan, Zahidul;
Sveinbjörnsson, Baldur;
FuskevÅg, O.-M.;
Segerström, Lova;
Nordenskjöld, Magnus;
Siesjö, Peter;
Kogner, Per;
Johnsen, John Inge;
Söderberg-Nauclér, Cecilia;
Sveinbjörnsson, Baldur;
FuskevÅg, O-M;
Segerström, Lova;
Nordenskjöld, Magnus;
Siesjö, Peter

Publication type:

journal article

27-Hydroxycholesterol Negatively Affects the Function of Bone Marrow Endothelial Cells in the Bone Marrow.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10517, doi. 10.3390/ijms251910517

By:

Woo, Soo-Yeon;
Shim, Wan-Seog;
Lee, Hyejin;
Baryawno, Ninib;
Song, Parkyong;
Kim, Byoung Soo;
Yoon, Sik;
Oh, Sae-Ock;
Lee, Dongjun

Publication type:

Article

Blockade of mTORC1 via Rapamycin Suppresses 27-Hydroxycholestrol-Induced Inflammatory Responses.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10381, doi. 10.3390/ijms251910381

By:

Kang, Nakyung;
Kim, Jaesung;
Kwon, Munju;
Son, Yonghae;
Eo, Seong-Kug;
Baryawno, Ninib;
Kim, Byoung Soo;
Yoon, Sik;
Oh, Sae-Ock;
Lee, Dongjun;
Kim, Koanhoi

Publication type:

Article

External signals regulate continuous transcriptional states in hematopoietic stem cells.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.66512

By:

Fast, Eva M.;
Sporrij, Audrey;
Manning, Margot;
Lummertz Rocha, Edroaldo;
Song Yang;
Yi Zhou;
Jimin Guo;
Baryawno, Ninib;
Barkas, Nikolaos;
Scadden, David;
Camargo, Fernando;
Zon, Leonard I.

Publication type:

Article

Macrophage infiltration promotes regrowth in MYCN-amplified neuroblastoma after chemotherapy.

Published in:

OncoImmunology, 2023, v. 12, n. 1, p. 1, doi. 10.1080/2162402X.2023.2184130

By:

Valind, Anders;
Verhoeven, Bronte Manouk;
Enoksson, Jens;
Karlsson, Jenny;
Christensson, Gustav;
Mañas, Adriana;
Aaltonen, Kristina;
Jansson, Caroline;
Bexell, Daniel;
Baryawno, Ninib;
Gisselsson, David;
Hagerling, Catharina

Publication type:

Article

Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36325-2

By:

Hirz, Taghreed;
Mei, Shenglin;
Sarkar, Hirak;
Kfoury, Youmna;
Wu, Shulin;
Verhoeven, Bronte M.;
Subtelny, Alexander O.;
Zlatev, Dimitar V.;
Wszolek, Matthew W.;
Salari, Keyan;
Murray, Evan;
Chen, Fei;
Macosko, Evan Z.;
Wu, Chin-Lee;
Scadden, David T.;
Dahl, Douglas M.;
Baryawno, Ninib;
Saylor, Philip J.;
Kharchenko, Peter V.;
Sykes, David B.

Publication type:

Article

A transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33375-w

By:

Alchahin, Adele M.;
Mei, Shenglin;
Tsea, Ioanna;
Hirz, Taghreed;
Kfoury, Youmna;
Dahl, Douglas;
Wu, Chin-Lee;
Subtelny, Alexander O.;
Wu, Shulin;
Scadden, David T.;
Shin, John H.;
Saylor, Philip J.;
Sykes, David B.;
Kharchenko, Peter V.;
Baryawno, Ninib

Publication type:

Article

Solute carrier family 2 member 2 (glucose transporter 2): a common factor of hepatocyte and hepatocellular carcinoma differentiation.

Published in:

PLoS ONE, 2025, v. 20, n. 4, p. 1, doi. 10.1371/journal.pone.0321020

By:

Kim, Yejin;
Yeuni, Yu;
Heo, Hye Jin;
Kim, Eun Sun;
Myung, Kyungjae;
Baryawno, Ninib;
Kim, Yun Hak;
Oh, Chang-Kyu

Publication type:

Article

Uncovering NK cell sabotage in gut diseases via single cell transcriptomics.

Published in:

PLoS ONE, 2025, v. 20, n. 1, p. 1, doi. 10.1371/journal.pone.0315981

By:

Lee, Hansong;
Ko, Dai Sik;
Heo, Hye Jin;
Baek, Seung Eun;
Kim, Eun Kyoung;
Kwon, Eun Jung;
Kang, Junho;
Yu, Yeuni;
Baryawno, Ninib;
Kim, Kihun;
Lee, Dongjun;
Kim, Yun Hak

Publication type:

Article

Medulloblastoma.

Published in:

Cell Cycle, 2010, v. 9, n. 13, p. 2548, doi. 10.4161/cc.9.13.12170

By:

Baryawno, Ninib;
Sveinbjörnsson, Baldur;
Kogner, Per;
Johnsen, John Inge

Publication type:

Article

Frequent detection of human cytomegalovirus in neuroblastoma: A novel therapeutic target?

Published in:

International Journal of Cancer, 2013, v. 133, n. 10, p. 2351, doi. 10.1002/ijc.28265

By:

Wolmer‐Solberg, Nina;
Baryawno, Ninib;
Rahbar, Afsar;
Fuchs, Dieter;
Odeberg, Jenny;
Taher, Chato;
Wilhelmi, Vanessa;
Milosevic, Jelena;
Mohammad, Abdul‐Aleem;
Martinsson, Tommy;
Sveinbjörnsson, Baldur;
Johnsen, John Inge;
Kogner, Per;
Söderberg‐Nauclér, Cecilia

Publication type:

Article

Targeting the hedgehog signal transduction pathway at the level of GLI inhibits neuroblastoma cell growth in vitro and in vivo.

Published in:

International Journal of Cancer, 2013, v. 132, n. 7, p. 1516, doi. 10.1002/ijc.27820

By:

Wickström, Malin;
Dyberg, Cecilia;
Shimokawa, Takashi;
Milosevic, Jelena;
Baryawno, Ninib;
Fuskevåg, Ole M.;
Larsson, Rolf;
Kogner, Per;
Zaphiropoulos, Peter G.;
Johnsen, John I.

Publication type:

Article

Effects of small molecule inhibitors of PI3K/Akt/mTOR signaling on neuroblastoma growth in vitro and in vivo.

Published in:

International Journal of Cancer, 2011, v. 129, n. 12, p. 2958, doi. 10.1002/ijc.26268

By:

Segerström, Lova;
Baryawno, Ninib;
Sveinbjörnsson, Baldur;
Wickström, Malin;
Elfman, Lotta;
Kogner, Per;
Johnsen, John Inge

Publication type:

Article

Wnt/β-catenin pathway regulates MGMT gene expression in cancer and inhibition of Wnt signalling prevents chemoresistance.

Published in:

Nature Communications, 2015, v. 6, n. 11, p. 8904, doi. 10.1038/ncomms9904

By:

Wickström, Malin;
Dyberg, Cecilia;
Milosevic, Jelena;
Einvik, Christer;
Calero, Raul;
Sveinbjörnsson, Baldur;
Sandén, Emma;
Darabi, Anna;
Siesjö, Peter;
Kool, Marcel;
Kogner, Per;
Baryawno, Ninib;
Johnsen, John Inge

Publication type:

Article

DHODH Inhibition Suppresses MYC and Inhibits the Growth of Medulloblastoma in a Novel In Vivo Zebrafish Model.

Published in:

Cancers, 2024, v. 16, n. 24, p. 4162, doi. 10.3390/cancers16244162

By:

Tsea, Ioanna;
Olsen, Thale Kristin;
Polychronopoulos, Panagiotis Alkinoos;
Tümmler, Conny;
Sykes, David B.;
Baryawno, Ninib;
Dyberg, Cecilia

Publication type:

Article

Recent Advances in Single-Cell RNA-Sequencing of Primary and Metastatic Clear Cell Renal Cell Carcinoma.

Published in:

Cancers, 2023, v. 15, n. 19, p. 4734, doi. 10.3390/cancers15194734

By:

Alchahin, Adele M.;
Tsea, Ioanna;
Baryawno, Ninib

Publication type:

Article

High Expression of PPM1D Induces Tumors Phenotypically Similar to TP53 Loss-of-Function Mutations in Mice.

Published in:

Cancers, 2021, v. 13, n. 21, p. 5493, doi. 10.3390/cancers13215493

By:

Milosevic, Jelena;
Fransson, Susanne;
Gulyas, Miklos;
Olsen, Thale K.;
Gallo-Oller, Gabriel;
Treis, Diana;
Elfman, Lotta H. M.;
Wilhelm, Margareta;
Martinsson, Tommy;
Baryawno, Ninib;
Kogner, Per;
Johnsen, John Inge

Publication type:

Article

Expression of enzymes and receptors of the leukotriene pathway in human neuroblastoma promotes tumor survival and provides a target for therapy.

Published in:

FASEB Journal, 2008, v. 22, n. 10, p. 3525, doi. 10.1096/fj.07-103457

By:

Sveinbjörnsson, Baldur;
Rasmuson, Agnes;
Baryawno, Ninib;
Min Wan;
Pettersen, Ingvild;
Ponthan, Frida;
Orrego, Abiel;
Haeggström, Jesper Z.;
Johnsen, John I.;
Kogner, Per

Publication type:

Article

Blood loses it when nerves go bad.

Published in:

Cell Research, 2014, v. 24, n. 10, p. 1151, doi. 10.1038/cr.2014.98

By:

Baryawno, Ninib;
Scadden, David T

Publication type:

Article

Genomic tumor evolution dictates human medulloblastoma progression.

Published in:

Neuro-Oncology Advances, 2024, v. 6, n. 1, p. 1, doi. 10.1093/noajnl/vdae172

By:

Ruchiy, Yana;
Tsea, Ioanna;
Preka, Efthalia;
Verhoeven, Bronte Manouk;
Olsen, Thale Kristin;
Mei, Shenglin;
Sinha, Indranil;
Blomgren, Klas;
Carlson, Lena-Maria;
Dyberg, Cecilia;
Johnsen, John Inge;
Baryawno, Ninib

Publication type:

Article

Oxime derivative TFOBO promotes cell death by modulating reactive oxygen species and regulating NADPH oxidase activity in myeloid leukemia.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11543-8

By:

Jo, Ahyoung;
Kwak, Jae-Hwan;
Woo, Soo-Yeon;
Kim, Bo-Young;
Son, Yonghae;
Choi, Hee-Seon;
Kim, Jayoung;
Kwon, Munju;
Cho, Hyok-Rae;
Eo, Seong-Kug;
Nam, Ji Ho;
Kim, Hyung-Sik;
Baryawno, Ninib;
Lee, Dongjun;
Kim, Koanhoi

Publication type:

Article

Role of reactive oxygen species in regulating 27-hydroxycholesterol-induced apoptosis of hematopoietic progenitor cells and myeloid cell lines.

Published in:

Cell Death & Disease, 2022, v. 13, n. 10, p. 1, doi. 10.1038/s41419-022-05360-0

By:

Woo, Soo-Yeon;
Lee, Hansong;
Park, Su Min;
Choi, Hee-Seon;
Kim, Jayoung;
Kwon, Munju;
Sohn, Jihyung;
Nam, Ji Ho;
Kim, Hyung-Sik;
Song, Parkyong;
Baryawno, Ninib;
Kim, Yun-Hak;
Kim, Koanhoi;
Lee, Dongjun

Publication type:

Article