Works matching AU Barry, Kerrie W.


Results: 36
    1

    Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA.

    Published in:
    Plant Journal, 2023, v. 116, n. 4, p. 1003, doi. 10.1111/tpj.16454
    By:
    • Zhou, Ran;
    • Jenkins, Jerry W;
    • Zeng, Yibing;
    • Shu, Shengqiang;
    • Jang, Hosung;
    • Harding, Scott A.;
    • Williams, Melissa;
    • Plott, Christopher;
    • Barry, Kerrie W.;
    • Koriabine, Maxim;
    • Amirebrahimi, Mojgan;
    • Talag, Jayson;
    • Rajasekar, Shanmugam;
    • Grimwood, Jane;
    • Schmitz, Robert J.;
    • Dawe, R. Kelly;
    • Schmutz, Jeremy;
    • Tsai, Chung‐Jui
    Publication type:
    Article
    2

    Construction and comparison of three reference‐quality genome assemblies for soybean.

    Published in:
    Plant Journal, 2019, v. 100, n. 5, p. 1066, doi. 10.1111/tpj.14500
    By:
    • Valliyodan, Babu;
    • Cannon, Steven B.;
    • Bayer, Philipp E.;
    • Shu, Shengqiang;
    • Brown, Anne V.;
    • Ren, Longhui;
    • Jenkins, Jerry;
    • Chung, Claire Y.‐L.;
    • Chan, Ting‐Fung;
    • Daum, Christopher G.;
    • Plott, Christopher;
    • Hastie, Alex;
    • Baruch, Kobi;
    • Barry, Kerrie W.;
    • Huang, Wei;
    • Patil, Gunvant;
    • Varshney, Rajeev K.;
    • Hu, Haifei;
    • Batley, Jacqueline;
    • Yuan, Yuxuan
    Publication type:
    Article
    3

    Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 10, p. 1263, doi. 10.1038/nbt1247
    By:
    • Martín, Héctor García;
    • Ivanova, Natalia;
    • Kunin, Victor;
    • Warnecke, Falk;
    • Barry, Kerrie W.;
    • McHardy, Alice C.;
    • Yeates, Christine;
    • He, Shaomei;
    • Salamov, Asaf A.;
    • Szeto, Ernest;
    • Dalin, Eileen;
    • Putnam, Nik H.;
    • Shapiro, Harris J.;
    • Pangilinan, Jasmyn L.;
    • Rigoutsos, Isidore;
    • Kyrpides, Nikos C.;
    • Blackall, Linda Louise;
    • McMahon, Katherine D.;
    • Hugenholtz, Philip
    Publication type:
    Article
    4
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    Symbiosis insights through metagenomic analysis of a microbial consortium.

    Published in:
    Nature, 2006, v. 443, n. 7114, p. 950, doi. 10.1038/nature05192
    By:
    • Woyke, Tanja;
    • Teeling, Hanno;
    • Ivanova, Natalia N.;
    • Huntemann, Marcel;
    • Richter, Michael;
    • Gloeckner, Frank Oliver;
    • Boffelli, Dario;
    • Anderson, Iain J.;
    • Barry, Kerrie W.;
    • Shapiro, Harris J.;
    • Szeto, Ernest;
    • Kyrpides, Nikos C.;
    • Mussmann, Marc;
    • Amann, Rudolf;
    • Bergin, Claudia;
    • Ruehland, Caroline;
    • Rubin, Edward M.;
    • Dubilier, Nicole
    Publication type:
    Article
    6

    Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.

    Published in:
    Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02009-0
    By:
    • Healey, Adam L.;
    • Shepherd, Mervyn;
    • King, Graham J.;
    • Butler, Jakob B.;
    • Freeman, Jules S.;
    • Lee, David J.;
    • Potts, Brad M.;
    • Silva-Junior, Orzenil B.;
    • Baten, Abdul;
    • Jenkins, Jerry;
    • Shu, Shengqiang;
    • Lovell, John T.;
    • Sreedasyam, Avinash;
    • Grimwood, Jane;
    • Furtado, Agnelo;
    • Grattapaglia, Dario;
    • Barry, Kerrie W.;
    • Hundley, Hope;
    • Simmons, Blake A.;
    • Schmutz, Jeremy
    Publication type:
    Article
    7

    DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus.

    Published in:
    New Phytologist, 2023, v. 238, n. 6, p. 2561, doi. 10.1111/nph.18734
    By:
    • Vigneaud, Julien;
    • Kohler, Annegret;
    • Sow, Mamadou Dia;
    • Delaunay, Alain;
    • Fauchery, Laure;
    • Guinet, Frederic;
    • Daviaud, Christian;
    • Barry, Kerrie W.;
    • Keymanesh, Keykhosrow;
    • Johnson, Jenifer;
    • Singan, Vasanth;
    • Grigoriev, Igor;
    • Fichot, Régis;
    • Conde, Daniel;
    • Perales, Mariano;
    • Tost, Jörg;
    • Martin, Francis M.;
    • Allona, Isabel;
    • Strauss, Steven H.;
    • Veneault‐Fourrey, Claire
    Publication type:
    Article
    8

    Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi.

    Published in:
    New Phytologist, 2022, v. 233, n. 5, p. 2294, doi. 10.1111/nph.17892
    By:
    • Looney, Brian;
    • Miyauchi, Shingo;
    • Morin, Emmanuelle;
    • Drula, Elodie;
    • Courty, Pierre Emmanuel;
    • Kohler, Annegret;
    • Kuo, Alan;
    • LaButti, Kurt;
    • Pangilinan, Jasmyn;
    • Lipzen, Anna;
    • Riley, Robert;
    • Andreopoulos, William;
    • He, Guifen;
    • Johnson, Jenifer;
    • Nolan, Matt;
    • Tritt, Andrew;
    • Barry, Kerrie W.;
    • Grigoriev, Igor V.;
    • Nagy, László G.;
    • Hibbett, David
    Publication type:
    Article
    9

    Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle.

    Published in:
    New Phytologist, 2021, v. 229, n. 5, p. 2917, doi. 10.1111/nph.17044
    By:
    • Marqués‐Gálvez, José Eduardo;
    • Miyauchi, Shingo;
    • Paolocci, Francesco;
    • Navarro‐Ródenas, Alfonso;
    • Arenas, Francisco;
    • Pérez‐Gilabert, Manuela;
    • Morin, Emmanuelle;
    • Auer, Lucas;
    • Barry, Kerrie W.;
    • Kuo, Alan;
    • Grigoriev, Igor V.;
    • Martin, Francis M.;
    • Kohler, Annegret;
    • Morte, Asunción
    Publication type:
    Article
    10

    Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.

    Published in:
    New Phytologist, 2018, v. 217, n. 3, p. 1213, doi. 10.1111/nph.14974
    By:
    • Martino, Elena;
    • Morin, Emmanuelle;
    • Grelet, Gwen‐Aëlle;
    • Kuo, Alan;
    • Kohler, Annegret;
    • Daghino, Stefania;
    • Barry, Kerrie W.;
    • Cichocki, Nicolas;
    • Clum, Alicia;
    • Dockter, Rhyan B.;
    • Hainaut, Matthieu;
    • Kuo, Rita C.;
    • LaButti, Kurt;
    • Lindahl, Björn D.;
    • Lindquist, Erika A.;
    • Lipzen, Anna;
    • Khouja, Hassine‐Radhouane;
    • Magnuson, Jon;
    • Murat, Claude;
    • Ohm, Robin A.
    Publication type:
    Article
    11
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    Genetic determinants of endophytism in the Arabidopsis root mycobiome.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27479-y
    By:
    • Mesny, Fantin;
    • Miyauchi, Shingo;
    • Thiergart, Thorsten;
    • Pickel, Brigitte;
    • Atanasova, Lea;
    • Karlsson, Magnus;
    • Hüttel, Bruno;
    • Barry, Kerrie W.;
    • Haridas, Sajeet;
    • Chen, Cindy;
    • Bauer, Diane;
    • Andreopoulos, William;
    • Pangilinan, Jasmyn;
    • LaButti, Kurt;
    • Riley, Robert;
    • Lipzen, Anna;
    • Clum, Alicia;
    • Drula, Elodie;
    • Henrissat, Bernard;
    • Kohler, Annegret
    Publication type:
    Article
    15

    Genome sequence of the model rice variety KitaakeX.

    Published in:
    BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6262-4
    By:
    • Jain, Rashmi;
    • Jenkins, Jerry;
    • Shu, Shengqiang;
    • Chern, Mawsheng;
    • Martin, Joel A.;
    • Copetti, Dario;
    • Duong, Phat Q.;
    • Pham, Nikki T.;
    • Kudrna, David A.;
    • Talag, Jayson;
    • Schackwitz, Wendy S.;
    • Lipzen, Anna M.;
    • Dilworth, David;
    • Bauer, Diane;
    • Grimwood, Jane;
    • Nelson, Catherine R.;
    • Xing, Feng;
    • Xie, Weibo;
    • Barry, Kerrie W.;
    • Wing, Rod A.
    Publication type:
    Article
    16
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    19

    Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose.

    Published in:
    Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01702-2
    By:
    • van Munster, Jolanda M.;
    • Daly, Paul;
    • Blythe, Martin J.;
    • Ibbett, Roger;
    • Kokolski, Matt;
    • Gaddipati, Sanyasi;
    • Lindquist, Erika;
    • Singan, Vasanth R.;
    • Barry, Kerrie W.;
    • Lipzen, Anna;
    • Ngan, Chew Yee;
    • Petzold, Christopher J.;
    • Chan, Leanne Jade G.;
    • Arvas, Mikko;
    • Raulo, Roxane;
    • Pullan, Steven T.;
    • Delmas, Stéphane;
    • Grigoriev, Igor V.;
    • Tucker, Gregory A.;
    • Simmons, Blake A.
    Publication type:
    Article
    20
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    22

    Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum.

    Published in:
    Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00141
    By:
    • de Freitas Pereira, Maíra;
    • Veneault-Fourrey, Claire;
    • Vion, Patrice;
    • Guinet, Fréderic;
    • Morin, Emmanuelle;
    • Barry, Kerrie W.;
    • Lipzen, Anna;
    • Singan, Vasanth;
    • Pfister, Stephanie;
    • Na, Hyunsoo;
    • Kennedy, Megan;
    • Egli, Simon;
    • Grigoriev, Igor;
    • Martin, Francis;
    • Kohler, Annegret;
    • Peter, Martina
    Publication type:
    Article
    23
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    Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1688, doi. 10.1038/ismej.2012.10
    By:
    • Aylward, Frank O;
    • Burnum, Kristin E;
    • Scott, Jarrod J;
    • Suen, Garret;
    • Tringe, Susannah G;
    • Adams, Sandra M;
    • Barry, Kerrie W;
    • Nicora, Carrie D;
    • Piehowski, Paul D;
    • Purvine, Samuel O;
    • Starrett, Gabriel J;
    • Goodwin, Lynne A;
    • Smith, Richard D;
    • Lipton, Mary S;
    • Currie, Cameron R
    Publication type:
    Article
    26

    Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.

    Published in:
    PLoS Pathogens, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.ppat.1003037
    By:
    • Ohm, Robin A.;
    • Feau, Nicolas;
    • Henrissat, Bernard;
    • Schoch, Conrad L.;
    • Horwitz, Benjamin A.;
    • Barry, Kerrie W.;
    • Condon, Bradford J.;
    • Copeland, Alex C.;
    • Dhillon, Braham;
    • Glaser, Fabian;
    • Hesse, Cedar N.;
    • Kosti, Idit;
    • LaButti, Kurt;
    • Lindquist, Erika A.;
    • Lucas, Susan;
    • Salamov, Asaf A.;
    • Bradshaw, Rosie E.;
    • Ciuffetti, Lynda;
    • Hamelin, Richard C.;
    • Kema, Gert H. J.
    Publication type:
    Article
    27

    Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.

    Published in:
    PLoS Pathogens, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.ppat.1003037
    By:
    • Ohm, Robin A.;
    • Feau, Nicolas;
    • Henrissat, Bernard;
    • Schoch, Conrad L.;
    • Horwitz, Benjamin A.;
    • Barry, Kerrie W.;
    • Condon, Bradford J.;
    • Copeland, Alex C.;
    • Dhillon, Braham;
    • Glaser, Fabian;
    • Hesse, Cedar N.;
    • Kosti, Idit;
    • LaButti, Kurt;
    • Lindquist, Erika A.;
    • Lucas, Susan;
    • Salamov, Asaf A.;
    • Bradshaw, Rosie E.;
    • Ciuffetti, Lynda;
    • Hamelin, Richard C.;
    • Kema, Gert H. J.
    Publication type:
    Article
    28
    29

    Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.

    Published in:
    Nature Communications, 2016, v. 7, n. 9, p. 12662, doi. 10.1038/ncomms12662
    By:
    • Peter, Martina;
    • Kohler, Annegret;
    • Ohm, Robin A.;
    • Kuo, Alan;
    • Krützmann, Jennifer;
    • Morin, Emmanuelle;
    • Arend, Matthias;
    • Barry, Kerrie W.;
    • Binder, Manfred;
    • Choi, Cindy;
    • Clum, Alicia;
    • Copeland, Alex;
    • Grisel, Nadine;
    • Haridas, Sajeet;
    • Kipfer, Tabea;
    • LaButti, Kurt;
    • Lindquist, Erika;
    • Lipzen, Anna;
    • Maire, Renaud;
    • Meier, Barbara
    Publication type:
    Article
    30

    Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.

    Published in:
    Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0700-9
    By:
    • Daly, Paul;
    • van Munster, Jolanda M.;
    • Blythe, Martin J.;
    • Ibbett, Roger;
    • Kokolski, Matt;
    • Gaddipati, Sanyasi;
    • Lindquist, Erika;
    • Singan, Vasanth R.;
    • Barry, Kerrie W.;
    • Lipzen, Anna;
    • Chew Yee Ngan;
    • Petzold, Christopher J.;
    • Chan, Leanne Jade G.;
    • Pullan, Steven T.;
    • Delmas, Stéphane;
    • Waldron, Paul R.;
    • Grigoriev, Igor V.;
    • Tucker, Gregory A.;
    • Simmons, Blake A.;
    • Archer, David B.
    Publication type:
    Article
    31

    Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.

    Published in:
    Plant Physiology, 2022, v. 189, n. 2, p. 516, doi. 10.1093/plphys/kiac128
    By:
    • Bewg, William P.;
    • Harding, Scott A.;
    • Engle, Nancy L.;
    • Vaidya, Brajesh N.;
    • Ran Zhou;
    • Reeves, Jacob;
    • Horn, Thomas W.;
    • Joshee, Nirmal;
    • Jenkins, Jerry W.;
    • Shengqiang Shu;
    • Barry, Kerrie W.;
    • Yuko Yoshinaga;
    • Grimwood, Jane;
    • Schmitz, Robert J.;
    • Schmutz, Jeremy;
    • Tschaplinski, Timothy J.;
    • Chung-Jui Tsai
    Publication type:
    Article
    32
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    Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18795-w
    By:
    • Miyauchi, Shingo;
    • Kiss, Enikő;
    • Kuo, Alan;
    • Drula, Elodie;
    • Kohler, Annegret;
    • Sánchez-García, Marisol;
    • Morin, Emmanuelle;
    • Andreopoulos, Bill;
    • Barry, Kerrie W.;
    • Bonito, Gregory;
    • Buée, Marc;
    • Carver, Akiko;
    • Chen, Cindy;
    • Cichocki, Nicolas;
    • Clum, Alicia;
    • Culley, David;
    • Crous, Pedro W.;
    • Fauchery, Laure;
    • Girlanda, Mariangela;
    • Hayes, Richard D.
    Publication type:
    Article
    34
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    Blueprint for a pop-up SARS-CoV-2 testing lab.

    Published in:
    2020
    By:
    • IGI Testing Consortium;
    • Amen, Alexandra M.;
    • Barry, Kerrie W.;
    • Boyle, John M.;
    • Brook, Cara E.;
    • Choo, Seunga;
    • Cornmesser, L. T.;
    • Dilworth, David J.;
    • Doudna, Jennifer A.;
    • Ehrenberg, Alexander J.;
    • Fedrigo, Indro;
    • Friedline, Skyler E.;
    • Graham, Thomas G. W.;
    • Green, Ralph;
    • Hamilton, Jennifer R.;
    • Hirsh, Ariana;
    • Hochstrasser, Megan L.;
    • Hockemeyer, Dirk;
    • Krishnappa, Netravathi;
    • Lari, Azra
    Publication type:
    Letter