Works by Barrangou, Rodolphe

Results: 73

Evolution and classification of the CRISPR-Cas systems.

Published in:

2011

By:

Makarova, Kira S.;
Haft, Daniel H.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Wolf, Yuri I.;
Yakunin, Alexander F.;
van der Oost, John;
Koonin, Eugene V.

Publication type:

Opinion

A Protoplast System for CRISPR-Cas Ribonucleoprotein Delivery in Pinus taeda and Abies fraseri.

Published in:

Plants (2223-7747), 2025, v. 14, n. 7, p. 996, doi. 10.3390/plants14070996

By:

Marques, Barbara M.;
Sulis, Daniel B.;
Suarez, Bethany;
Yang, Chenmin;
Cofre-Vega, Carlos;
Thomas, Robert D.;
Whitehill, Justin G. A.;
Whetten, Ross W.;
Barrangou, Rodolphe;
Wang, Jack P.

Publication type:

Article

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29746-3

By:

Crawley, Alexandra B.;
Henriksen, Emily D.;
Stout, Emily;
Brandt, Katelyn;
Barrangou, Rodolphe

Publication type:

Article

Clustered Regularly Interspaced Short Palindromic Repeats Genotyping of Multidrug-Resistant Salmonella Heidelberg Strains Isolated From the Poultry Production Chain Across Brazil.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.867278

By:

Monte, Daniel F. M.;
Nethery, Matthew A.;
Berman, Hanna;
Keelara, Shivaramu;
Lincopan, Nilton;
Fedorka-Cray, Paula J.;
Barrangou, Rodolphe;
Landgraf, Mariza

Publication type:

Article

Metabolomic Analysis of Lactobacillus acidophilus, L. gasseri, L. crispatus , and Lacticaseibacillus rhamnosus Strains in the Presence of Pomegranate Extract.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.863228

By:

Chamberlain, MaryClaire;
O'Flaherty, Sarah;
Cobián, Natalia;
Barrangou, Rodolphe

Publication type:

Article

Comparative Genomic Analyses and CRISPR-Cas Characterization of Cutibacterium acnes Provide Insights Into Genetic Diversity and Typing Applications.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.758749

By:

Cobian, Natalia;
Garlet, Allison;
Hidalgo-Cantabrana, Claudio;
Barrangou, Rodolphe

Publication type:

Article

Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192181

By:

Anderson, Emily M.;
McClelland, Shawn;
Maksimova, Elena;
Strezoska, Žaklina;
Basila, Megan;
Briner, Alexandra E.;
Barrangou, Rodolphe;
Smith, Anja van Brabant

Publication type:

Article

Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-312

By:

Andersen, Joakim M.;
Barrangou, Rodolphe;
Hachem, Maher Abou;
Lahtinen, Sampo J.;
Yong Jun Goh;
Svensson, Birte;
Klaenhammer, Todd R.

Publication type:

Article

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 533, doi. 10.1186/1471-2164-13-533

By:

Broadbent, Jeff R.;
Neeno-Eckwall, Eric C.;
Stahl, Buffy;
Tandee, Kanokwan;
Cai, Hui;
Morovic, Wesley;
Horvath, Ohilippe;
Heidenreich, Jessie;
Perna, Nicole T.;
Barrangou, Rodolphe;
Steele, James L.

Publication type:

Article

The repurposing of type I-E CRISPR-Cascade for gene activation in plants.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0637-6

By:

Young, Joshua K.;
Gasior, Stephen L.;
Jones, Spencer;
Wang, Lijuan;
Navarro, Pedro;
Vickroy, Becca;
Barrangou, Rodolphe

Publication type:

Article

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133661

By:

Briner, Alexandra E.;
Lugli, Gabriele Andrea;
Milani, Christian;
Duranti, Sabrina;
Turroni, Francesca;
Gueimonde, Miguel;
Margolles, Abelardo;
van Sinderen, Douwe;
Ventura, Marco;
Barrangou, Rodolphe

Publication type:

Article

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044409

By:

Andersen, Joakim Mark;
Barrangou, Rodolphe;
Hachem, Maher Abou;
Lahtinen, Sampo J.;
Yong-Jun Goh;
Svensson, Birte;
Klaenhammer, Todd R.;
Gibas, Cynthia

Publication type:

Article

Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0038077

By:

Young, Jacque C.;
Dill, Brian D.;
Chongle Pan;
Hettich, Robert L.;
Banfield, Jillian F.;
Shah, Manesh;
Fremaux, Christophe;
Horvath, Philippe;
Barrangou, Rodolphe;
VerBerkmoes, Nathan C.

Publication type:

Article

CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates.

Published in:

BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-254

By:

Shariat, Nikki;
Sandt, Carol H.;
DiMarzio, Michael J.;
Barrangou, Rodolphe;
Dudley, Edward G.

Publication type:

Article

Genomic characterization of Lactobacillus fermentum DSM 20052.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6740-8

By:

Brandt, Katelyn;
Nethery, Matthew A.;
O'Flaherty, Sarah;
Barrangou, Rodolphe

Publication type:

Article

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6274-0

By:

Nethery, Matthew A.;
Henriksen, Emily DeCrescenzo;
Daughtry, Katheryne V.;
Johanningsmeier, Suzanne D.;
Barrangou, Rodolphe

Publication type:

Article

Genome-Wide Comparative Analysis of Lactiplantibacillus pentosus Isolates Autochthonous to Cucumber Fermentation Reveals Subclades of Divergent Ancestry.

Published in:

Foods, 2023, v. 12, n. 13, p. 2455, doi. 10.3390/foods12132455

By:

Page, Clinton A.;
Pérez-Díaz, Ilenys M.;
Pan, Meichen;
Barrangou, Rodolphe

Publication type:

Article

Phage mutations in response to CRISPR diversification in a bacterial population.

Published in:

Environmental Microbiology, 2013, v. 15, n. 2, p. 463, doi. 10.1111/j.1462-2920.2012.02879.x

By:

Sun, Christine L.;
Barrangou, Rodolphe;
Thomas, Brian C.;
Horvath, Philippe;
Fremaux, Christophe;
Banfield, Jillian F.

Publication type:

Article

The three major types of CRISPR- Cas systems function independently in CRISPR RNA biogenesis in S treptococcus thermophilus.

Published in:

Molecular Microbiology, 2014, v. 93, n. 1, p. 98, doi. 10.1111/mmi.12644

By:

Carte, Jason;
Christopher, Ross T.;
Smith, Justin T.;
Olson, Sara;
Barrangou, Rodolphe;
Moineau, Sylvain;
Glover, Claiborne V. C.;
Graveley, Brenton R.;
Terns, Rebecca M.;
Terns, Michael P.

Publication type:

Article

CRISPR-Cas systems and RNA-guided interference.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2013, v. 4, n. 3, p. 267, doi. 10.1002/wrna.1159

By:

Barrangou, Rodolphe

Publication type:

Article

Immune loss as a driver of coexistence during host-phage coevolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 2, p. 585, doi. 10.1038/ismej.2017.194

By:

Weissman, Jake L;
Holmes, Rayshawn;
Barrangou, Rodolphe;
Moineau, Sylvain;
Fagan, William F;
Levin, Bruce;
Johnson, Philip L F

Publication type:

Article

Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 4, p. 858, doi. 10.1038/ismej.2015.162

By:

Sun, Christine L;
Thomas, Brian C;
Barrangou, Rodolphe;
Banfield, Jillian F

Publication type:

Article

On the global CRISPR array behavior in class I systems.

Published in:

Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0193-2

By:

Toms, Alice;
Barrangou, Rodolphe

Publication type:

Article

Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract.

Published in:

PLoS Pathogens, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.ppat.1007581

By:

Foley, Matthew H.;
O’Flaherty, Sarah;
Barrangou, Rodolphe;
Theriot, Casey M.

Publication type:

Article

Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria.

Published in:

Biocatalysis & Biotransformation, 2013, v. 31, n. 4, p. 226, doi. 10.3109/10242422.2013.828048

By:

Abou Hachem, Maher;
Andersen, Joakim M.;
Barrangou, Rodolphe;
Møller, Marie S.;
Fredslund, Folmer;
Majumder, Avishek;
Ejby, Morten;
Lahtinen, Sampo J.;
Jacobsen, Susanne;
Lo Leggio, Leila;
Goh, Yong Jun;
Klaenhammer, Todd R.;
Svensson, Birte

Publication type:

Article

Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00345

By:

Klotz, Courtney;
Goh, Yong Jun;
O'Flaherty, Sarah;
Johnson, Brant;
Barrangou, Rodolphe

Publication type:

Article

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts.

Published in:

Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03146

By:

Pan, Meichen;
Hidalgo-Cantabrana, Claudio;
Goh, Yong Jun;
Sanozky-Dawes, Rosemary;
Barrangou, Rodolphe

Publication type:

Article

CRISPR Technology and its Many Applications with Select Examples Related to Animal Agriculture.

Published in:

Journal of Animal Science, 2023, v. 101, p. 1, doi. 10.1093/jas/skad068.001

By:

Barrangou, Rodolphe

Publication type:

Article

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00657

By:

Brandt, Katelyn;
Barrangou, Rodolphe;
Margolles, Abelardo;
Lugli, Gabriele Andrea

Publication type:

Article

Construction of vectors for inducible and constitutive gene expression in Lactobacillus.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 3, p. 357, doi. 10.1111/j.1751-7915.2010.00200.x

By:

Duong, Tri;
Miller, Michael J.;
Barrangou, Rodolphe;
Azcarate-Peril, M. Andrea;
Klaenhammer, Todd R.

Publication type:

Article

Genomic impact of CRISPR immunization against bacteriophages.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 6, p. 1383, doi. 10.1042/BST20130160

By:

Barrangou, Rodolphe;
Coûté-Monvoisin, Anne-Claire;
Stahl, Buffy;
Chavichvily, Isabelle;
Damange, Florian;
Romero, Dennis A.;
Boyaval, Patrick;
Fremaux, Christophe;
Horvath, Philippe

Publication type:

Article

Adaptive response to iterative passages of five Lactobacillus species in simulated vaginal fluid.

Published in:

BMC Microbiology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12866-020-02027-8

By:

Brandt, Katelyn;
Barrangou, Rodolphe

Publication type:

Article

S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM.

Published in:

BMC Microbiology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12866-020-01908-2

By:

Klotz, Courtney;
Goh, Yong Jun;
O'Flaherty, Sarah;
Barrangou, Rodolphe

Publication type:

Article

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pcbi.1002475

By:

Weinberger, Ariel D.;
Sun, Christine L.;
Pluciński, Mateusz M.;
Denef, Vincent J.;
Thomas, Brian C.;
Horvath, Philippe;
Barrangou, Rodolphe;
Gilmore, Michael S.;
Getz, Wayne M.;
Banfield, Jillian F.

Publication type:

Article

Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism.

Published in:

Microorganisms, 2023, v. 11, n. 2, p. 404, doi. 10.3390/microorganisms11020404

By:

O'Flaherty, Sarah;
Cobian, Natalia;
Barrangou, Rodolphe

Publication type:

Article

Comprehensive Mining and Characterization of CRISPR-Cas Systems in Bifidobacterium.

Published in:

Microorganisms, 2020, v. 8, n. 5, p. 720, doi. 10.3390/microorganisms8050720

By:

Pan, Meichen;
Nethery, Matthew A.;
Hidalgo-Cantabrana, Claudio;
Barrangou, Rodolphe

Publication type:

Article

Advances in lignocellulosic feedstocks for bioenergy and bioproducts.

Published in:

2025

By:

Sulis, Daniel B.;
Lavoine, Nathalie;
Sederoff, Heike;
Jiang, Xiao;
Marques, Barbara M.;
Lan, Kai;
Cofre-Vega, Carlos;
Barrangou, Rodolphe;
Wang, Jack P.

Publication type:

Literature Review

Les systèmes CRISPR-Cas comme arme contre les bactéries pathogènes.

Published in:

Biologie Aujourd'hui, 2017, v. 211, n. 4, p. 265, doi. 10.1051/jbio/2018004

By:

Bikard, David;
Barrangou, Rodolphe

Publication type:

Article

Pulling the genome in opposite directions to dissect gene networks.

Published in:

Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-018-1425-1

By:

Gersbach, Charles A.;
Barrangou, Rodolphe

Publication type:

Article

Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.02264

By:

Klotz, Courtney;
Barrangou, Rodolphe

Publication type:

Article

Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01834

By:

Crawley, Alexandra B.;
Barrangou, Rodolphe

Publication type:

Article

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02174

By:

Klotz, Courtney;
O'Flaherty, Sarah;
Yong Jun Goh;
Barrangou, Rodolphe

Publication type:

Article

Functional characterization of diverse type I-F CRISPR-associated transposons.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11670, doi. 10.1093/nar/gkac985

By:

Roberts, Avery;
Nethery, Matthew A;
Barrangou, Rodolphe

Publication type:

Article

Strong bias in the bacterial CRISPR elements that confer immunity to phage.

Published in:

Nature Communications, 2013, v. 4, n. 2, p. 1430, doi. 10.1038/ncomms2440

By:

Paez-Espino, David;
Morovic, Wesley;
Sun, Christine L.;
Thomas, Brian C.;
Ueda, Ken-ichi;
Stahl, Buffy;
Barrangou, Rodolphe;
Banfield, Jillian F.

Publication type:

Article

Insights into the Human Virome Using CRISPR Spacers from Microbiomes.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 9, p. 479, doi. 10.3390/v10090479

By:

Hidalgo-Cantabrana, Claudio;
Sanozky-Dawes, Rosemary;
Barrangou, Rodolphe

Publication type:

Article

CRISPR Diversity and Microevolution in Clostridium difficile.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 9, p. 2841, doi. 10.1093/gbe/evw203

By:

Andersen, Joakim M.;
Shoup, Madelyn;
Robinson, Cathy;
Britton, Robert;
Olsen, Katharina E. P.;
Barrangou, Rodolphe

Publication type:

Article

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline.

Published in:

RNA Biology, 2019, v. 16, n. 4, p. 577, doi. 10.1080/15476286.2018.1493332

By:

Nethery, Matthew A.;
Barrangou, Rodolphe

Publication type:

Article

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems.

Published in:

RNA Biology, 2019, v. 16, n. 4, p. 435, doi. 10.1080/15476286.2018.1493331

By:

Faure, Guilhem;
Shmakov, Sergey A.;
Makarova, Kira S.;
Wolf, Yuri I.;
Crawley, Alexandra B.;
Barrangou, Rodolphe;
Koonin, Eugene V.

Publication type:

Article

crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus.

Published in:

RNA Biology, 2013, v. 10, n. 5, p. 841, doi. 10.4161/rna.24203

By:

Karvelis, Tautvydas;
Gasiunas, Giedrius;
Miksys, Algirdas;
Barrangou, Rodolphe;
Horvath, Philippe;
Siksnys, Virginijus

Publication type:

Article

An updated evolutionary classification of CRISPR-Cas systems.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 11, p. 722, doi. 10.1038/nrmicro3569

By:

Makarova, Kira S.;
Wolf, Yuri I.;
Alkhnbashi, Omer S.;
Costa, Fabrizio;
Shah, Shiraz A.;
Saunders, Sita J.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Haft, Daniel H.;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Terns, Rebecca M.;
Terns, Michael P.;
White, Malcolm F.;
Yakunin, Alexander F.;
Garrett, Roger A.;
van der Oost, John;
Backofen, Rolf

Publication type:

Article