Works matching AU Barrangou, Rodolphe

Results: 73

An updated evolutionary classification of CRISPR-Cas systems.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 11, p. 722, doi. 10.1038/nrmicro3569

By:

Makarova, Kira S.;
Wolf, Yuri I.;
Alkhnbashi, Omer S.;
Costa, Fabrizio;
Shah, Shiraz A.;
Saunders, Sita J.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Haft, Daniel H.;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Terns, Rebecca M.;
Terns, Michael P.;
White, Malcolm F.;
Yakunin, Alexander F.;
Garrett, Roger A.;
van der Oost, John;
Backofen, Rolf

Publication type:

Article

Evolution and classification of the CRISPR-Cas systems.

Published in:

2011

By:

Makarova, Kira S.;
Haft, Daniel H.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Wolf, Yuri I.;
Yakunin, Alexander F.;
van der Oost, John;
Koonin, Eugene V.

Publication type:

Opinion

CRISPR Technology and its Many Applications with Select Examples Related to Animal Agriculture.

Published in:

Journal of Animal Science, 2023, v. 101, p. 1, doi. 10.1093/jas/skad068.001

By:

Barrangou, Rodolphe

Publication type:

Article

Advances in lignocellulosic feedstocks for bioenergy and bioproducts.

Published in:

2025

By:

Sulis, Daniel B.;
Lavoine, Nathalie;
Sederoff, Heike;
Jiang, Xiao;
Marques, Barbara M.;
Lan, Kai;
Cofre-Vega, Carlos;
Barrangou, Rodolphe;
Wang, Jack P.

Publication type:

Literature Review

Insights into the Human Virome Using CRISPR Spacers from Microbiomes.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 9, p. 479, doi. 10.3390/v10090479

By:

Hidalgo-Cantabrana, Claudio;
Sanozky-Dawes, Rosemary;
Barrangou, Rodolphe

Publication type:

Article

Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00345

By:

Klotz, Courtney;
Goh, Yong Jun;
O'Flaherty, Sarah;
Johnson, Brant;
Barrangou, Rodolphe

Publication type:

Article

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts.

Published in:

Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03146

By:

Pan, Meichen;
Hidalgo-Cantabrana, Claudio;
Goh, Yong Jun;
Sanozky-Dawes, Rosemary;
Barrangou, Rodolphe

Publication type:

Article

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9275, doi. 10.1093/nar/gkr606

By:

Sapranauskas, Rimantas;
Gasiunas, Giedrius;
Fremaux, Christophe;
Barrangou, Rodolphe;
Horvath, Philippe;
Siksnys, Virginijus

Publication type:

Article

Pulling the genome in opposite directions to dissect gene networks.

Published in:

Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-018-1425-1

By:

Gersbach, Charles A.;
Barrangou, Rodolphe

Publication type:

Article

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline.

Published in:

RNA Biology, 2019, v. 16, n. 4, p. 577, doi. 10.1080/15476286.2018.1493332

By:

Nethery, Matthew A.;
Barrangou, Rodolphe

Publication type:

Article

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems.

Published in:

RNA Biology, 2019, v. 16, n. 4, p. 435, doi. 10.1080/15476286.2018.1493331

By:

Faure, Guilhem;
Shmakov, Sergey A.;
Makarova, Kira S.;
Wolf, Yuri I.;
Crawley, Alexandra B.;
Barrangou, Rodolphe;
Koonin, Eugene V.

Publication type:

Article

CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates.

Published in:

BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-254

By:

Shariat, Nikki;
Sandt, Carol H.;
DiMarzio, Michael J.;
Barrangou, Rodolphe;
Dudley, Edward G.

Publication type:

Article

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6274-0

By:

Nethery, Matthew A.;
Henriksen, Emily DeCrescenzo;
Daughtry, Katheryne V.;
Johanningsmeier, Suzanne D.;
Barrangou, Rodolphe

Publication type:

Article

The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR--Mediated Immunity.

Published in:

PLoS Genetics, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pgen.1003312

By:

Levin, Bruce R.;
Moineau, Sylvain;
Bushman, Mary;
Barrangou, Rodolphe

Publication type:

Article

The repurposing of type I-E CRISPR-Cascade for gene activation in plants.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0637-6

By:

Young, Joshua K.;
Gasior, Stephen L.;
Jones, Spencer;
Wang, Lijuan;
Navarro, Pedro;
Vickroy, Becca;
Barrangou, Rodolphe

Publication type:

Article

Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria.

Published in:

Biocatalysis & Biotransformation, 2013, v. 31, n. 4, p. 226, doi. 10.3109/10242422.2013.828048

By:

Abou Hachem, Maher;
Andersen, Joakim M.;
Barrangou, Rodolphe;
Møller, Marie S.;
Fredslund, Folmer;
Majumder, Avishek;
Ejby, Morten;
Lahtinen, Sampo J.;
Jacobsen, Susanne;
Lo Leggio, Leila;
Goh, Yong Jun;
Klaenhammer, Todd R.;
Svensson, Birte

Publication type:

Article

Lactobacillus acidophilus Expressing Murine Rotavirus VP8 and Mucosal Adjuvants Induce Virus-Specific Immune Responses.

Published in:

Vaccines, 2023, v. 11, n. 12, p. 1774, doi. 10.3390/vaccines11121774

By:

Gilfillan, Darby;
Vilander, Allison C.;
Pan, Meichen;
Goh, Yong Jun;
O'Flaherty, Sarah;
Feng, Ningguo;
Fox, Bridget E.;
Lang, Callie;
Greenberg, Harry B.;
Abdo, Zaid;
Barrangou, Rodolphe;
Dean, Gregg A.

Publication type:

Article

Comparative Genomic Analyses and CRISPR-Cas Characterization of Cutibacterium acnes Provide Insights Into Genetic Diversity and Typing Applications.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.758749

By:

Cobian, Natalia;
Garlet, Allison;
Hidalgo-Cantabrana, Claudio;
Barrangou, Rodolphe

Publication type:

Article

Phage mutations in response to CRISPR diversification in a bacterial population.

Published in:

Environmental Microbiology, 2013, v. 15, n. 2, p. 463, doi. 10.1111/j.1462-2920.2012.02879.x

By:

Sun, Christine L.;
Barrangou, Rodolphe;
Thomas, Brian C.;
Horvath, Philippe;
Fremaux, Christophe;
Banfield, Jillian F.

Publication type:

Article

CRISPR Diversity and Microevolution in Clostridium difficile.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 9, p. 2841, doi. 10.1093/gbe/evw203

By:

Andersen, Joakim M.;
Shoup, Madelyn;
Robinson, Cathy;
Britton, Robert;
Olsen, Katharina E. P.;
Barrangou, Rodolphe

Publication type:

Article

Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 11, p. 2109, doi. 10.1093/gbe/evt159

By:

Timme, Ruth E.;
Pettengill, James B.;
Allard, Marc W.;
Strain, Errol;
Barrangou, Rodolphe;
Wehnes, Chris;
Van Kessel, JoAnn S.;
Karns, Jeffrey S.;
Musser, Steven M.;
Brown, Eric W.

Publication type:

Article

Construction of vectors for inducible and constitutive gene expression in Lactobacillus.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 3, p. 357, doi. 10.1111/j.1751-7915.2010.00200.x

By:

Duong, Tri;
Miller, Michael J.;
Barrangou, Rodolphe;
Azcarate-Peril, M. Andrea;
Klaenhammer, Todd R.

Publication type:

Article

Genome-Wide Comparative Analysis of Lactiplantibacillus pentosus Isolates Autochthonous to Cucumber Fermentation Reveals Subclades of Divergent Ancestry.

Published in:

Foods, 2023, v. 12, n. 13, p. 2455, doi. 10.3390/foods12132455

By:

Page, Clinton A.;
Pérez-Díaz, Ilenys M.;
Pan, Meichen;
Barrangou, Rodolphe

Publication type:

Article

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02174

By:

Klotz, Courtney;
O'Flaherty, Sarah;
Yong Jun Goh;
Barrangou, Rodolphe

Publication type:

Article

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01851

By:

Hidalgo-Cantabrana, Claudio;
Crawley, Alexandra B.;
Sanchez, Borja;
Barrangou, Rodolphe

Publication type:

Article

Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.00553

By:

Selle, Kurt;
Goh, Yong J.;
Johnson, Brant R.;
O'Flaherty, Sarah;
Andersen, Joakim M.;
Barrangou, Rodolphe;
Klaenhammer, Todd R.

Publication type:

Article

Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192181

By:

Anderson, Emily M.;
McClelland, Shawn;
Maksimova, Elena;
Strezoska, Žaklina;
Basila, Megan;
Briner, Alexandra E.;
Barrangou, Rodolphe;
Smith, Anja van Brabant

Publication type:

Article

Bacteriophage exclusion, a new defense system.

Published in:

EMBO Journal, 2015, v. 34, n. 2, p. 134, doi. 10.15252/embj.201490620

By:

Barrangou, Rodolphe;
Oost, John

Publication type:

Article

Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract.

Published in:

PLoS Pathogens, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.ppat.1007581

By:

Foley, Matthew H.;
O’Flaherty, Sarah;
Barrangou, Rodolphe;
Theriot, Casey M.

Publication type:

Article

A Protoplast System for CRISPR-Cas Ribonucleoprotein Delivery in Pinus taeda and Abies fraseri.

Published in:

Plants (2223-7747), 2025, v. 14, n. 7, p. 996, doi. 10.3390/plants14070996

By:

Marques, Barbara M.;
Sulis, Daniel B.;
Suarez, Bethany;
Yang, Chenmin;
Cofre-Vega, Carlos;
Thomas, Robert D.;
Whitehill, Justin G. A.;
Whetten, Ross W.;
Barrangou, Rodolphe;
Wang, Jack P.

Publication type:

Article

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01747

By:

Morovic, Wesley;
Hibberd, Ashley A.;
Zabel, Bryan;
Barrangou, Rodolphe;
Stahl, Buffy

Publication type:

Article

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00657

By:

Brandt, Katelyn;
Barrangou, Rodolphe;
Margolles, Abelardo;
Lugli, Gabriele Andrea

Publication type:

Article

Immune loss as a driver of coexistence during host-phage coevolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 2, p. 585, doi. 10.1038/ismej.2017.194

By:

Weissman, Jake L;
Holmes, Rayshawn;
Barrangou, Rodolphe;
Moineau, Sylvain;
Fagan, William F;
Levin, Bruce;
Johnson, Philip L F

Publication type:

Article

Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 4, p. 858, doi. 10.1038/ismej.2015.162

By:

Sun, Christine L;
Thomas, Brian C;
Barrangou, Rodolphe;
Banfield, Jillian F

Publication type:

Article

Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-312

By:

Andersen, Joakim M.;
Barrangou, Rodolphe;
Hachem, Maher Abou;
Lahtinen, Sampo J.;
Yong Jun Goh;
Svensson, Birte;
Klaenhammer, Todd R.

Publication type:

Article

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 533, doi. 10.1186/1471-2164-13-533

By:

Broadbent, Jeff R.;
Neeno-Eckwall, Eric C.;
Stahl, Buffy;
Tandee, Kanokwan;
Cai, Hui;
Morovic, Wesley;
Horvath, Ohilippe;
Heidenreich, Jessie;
Perna, Nicole T.;
Barrangou, Rodolphe;
Steele, James L.

Publication type:

Article

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29746-3

By:

Crawley, Alexandra B.;
Henriksen, Emily D.;
Stout, Emily;
Brandt, Katelyn;
Barrangou, Rodolphe

Publication type:

Article

The three major types of CRISPR- Cas systems function independently in CRISPR RNA biogenesis in S treptococcus thermophilus.

Published in:

Molecular Microbiology, 2014, v. 93, n. 1, p. 98, doi. 10.1111/mmi.12644

By:

Carte, Jason;
Christopher, Ross T.;
Smith, Justin T.;
Olson, Sara;
Barrangou, Rodolphe;
Moineau, Sylvain;
Glover, Claiborne V. C.;
Graveley, Brenton R.;
Terns, Rebecca M.;
Terns, Michael P.

Publication type:

Article

Strong bias in the bacterial CRISPR elements that confer immunity to phage.

Published in:

Nature Communications, 2013, v. 4, n. 2, p. 1430, doi. 10.1038/ncomms2440

By:

Paez-Espino, David;
Morovic, Wesley;
Sun, Christine L.;
Thomas, Brian C.;
Ueda, Ken-ichi;
Stahl, Buffy;
Barrangou, Rodolphe;
Banfield, Jillian F.

Publication type:

Article

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pcbi.1002475

By:

Weinberger, Ariel D.;
Sun, Christine L.;
Pluciński, Mateusz M.;
Denef, Vincent J.;
Thomas, Brian C.;
Horvath, Philippe;
Barrangou, Rodolphe;
Gilmore, Michael S.;
Getz, Wayne M.;
Banfield, Jillian F.

Publication type:

Article

Functional characterization of diverse type I-F CRISPR-associated transposons.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11670, doi. 10.1093/nar/gkac985

By:

Roberts, Avery;
Nethery, Matthew A;
Barrangou, Rodolphe

Publication type:

Article

Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3407, doi. 10.1093/nar/gkv226

By:

Barrangou, Rodolphe;
Birmingham, Amanda;
Wiemann, Stefan;
Beijersbergen, Roderick L.;
Hornung, Veit;
van Brabant Smith, Anja

Publication type:

Article

Les systèmes CRISPR-Cas comme arme contre les bactéries pathogènes.

Published in:

Biologie Aujourd'hui, 2017, v. 211, n. 4, p. 265, doi. 10.1051/jbio/2018004

By:

Bikard, David;
Barrangou, Rodolphe

Publication type:

Article

Diversity of CRISPR-Cas immune systems and molecular machines.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0816-9

By:

Barrangou, Rodolphe

Publication type:

Article

A CRISPR design for next-generation antimicrobials.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 516, doi. 10.1186/s13059-014-0516-x

By:

Beisel, Chase L;
Gomaa, Ahmed A;
Barrangou, Rodolphe

Publication type:

Article

In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus.

Published in:

EMBO Journal, 2013, v. 32, n. 3, p. 385, doi. 10.1038/emboj.2012.352

By:

Sinkunas, Tomas;
Gasiunas, Giedrius;
Waghmare, Sakharam P;
Dickman, Mark J;
Barrangou, Rodolphe;
Horvath, Philippe;
Siksnys, Virginijus

Publication type:

Article

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system.

Published in:

EMBO Journal, 2011, v. 30, n. 7, p. 1335, doi. 10.1038/emboj.2011.41

By:

Sinkunas, Tomas;
Gasiunas, Giedrius;
Fremaux, Christophe;
Barrangou, Rodolphe;
Horvath, Philippe;
Siksnys, Virginijus

Publication type:

Article

Genomic characterization of Lactobacillus fermentum DSM 20052.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6740-8

By:

Brandt, Katelyn;
Nethery, Matthew A.;
O'Flaherty, Sarah;
Barrangou, Rodolphe

Publication type:

Article

Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.02264

By:

Klotz, Courtney;
Barrangou, Rodolphe

Publication type:

Article

Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01834

By:

Crawley, Alexandra B.;
Barrangou, Rodolphe

Publication type:

Article