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Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids.
- Published in:
- Plant Biotechnology Journal, 2021, v. 19, n. 12, p. 2488, doi. 10.1111/pbi.13674
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- Article
Underwater CAM photosynthesis elucidated by Isoetes genome.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26644-7
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- Article
EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics.
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- Evolutionary Bioinformatics, 2010, n. 6, p. 143, doi. 10.4137/EBO.S5861
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- Article
Genome size evolution in the diverse insect order Trichoptera.
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- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac011
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- Article
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
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- GigaScience, 2019, v. 8, n. 10, p. N.PAG, doi. 10.1093/gigascience/giz126
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- Article
COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENT HELIANTHUS SPECIES.
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- Evolution, 2009, v. 63, n. 8, p. 2061, doi. 10.1111/j.1558-5646.2009.00703.x
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- Article
The Chimonanthus salicifolius genome provides insight into magnoliids evolution and flavonoids biosynthesis.
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- Plant Journal, 2020, v. 103, n. 5, p. 1910, doi. 10.1111/tpj.14874
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- Article
Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention.
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- Plant Journal, 2017, v. 91, n. 1, p. 3, doi. 10.1111/tpj.13553
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- Article
Genomic inferences of domestication events are corroborated by written records in Brassica rapa.
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- Molecular Ecology, 2017, v. 26, n. 13, p. 3373, doi. 10.1111/mec.14131
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- Article
Unfurling Fern Biology in the Genomics Age.
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- BioScience, 2010, v. 60, n. 3, p. 177, doi. 10.1525/bio.2010.60.3.4
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- Article
Development of an Ultra-Dense Genetic Map of the Sunflower Genome Based on Single-Feature Polymorphisms.
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- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051360
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- Article
Nuclear Genome Size is Positively Correlated with Median LTR-RT Insertion Time in Fern and Lycophyte Genomes.
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- American Fern Journal, 2019, v. 109, n. 3, p. 248, doi. 10.1640/0002-8444-109.3.248
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- Article
Current Status and Future Prospects for Fern and Lycophyte Genomics: Introduction to an American Fern Journal Special Issue.
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- American Fern Journal, 2019, v. 109, n. 3, p. 177, doi. 10.1640/0002-8444-109.3.177
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- Article
A Successful in vitro Propagation Technique for Resurrection Plants of the Selaginellaceae.
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- American Fern Journal, 2017, v. 107, n. 2, p. 96, doi. 10.1640/0002-8444-107.2.96
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- Article
GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data.
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- Applications in Plant Sciences, 2023, v. 11, n. 4, p. 1, doi. 10.1002/aps3.11536
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- Article
Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest.
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- Applications in Plant Sciences, 2021, v. 9, n. 2, p. 1, doi. 10.1002/aps3.11409
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- Article
TagSeq for gene expression in non‐model plants: A pilot study at the Santa Rita Experimental Range NEON core site.
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- Applications in Plant Sciences, 2020, v. 8, n. 11, p. 1, doi. 10.1002/aps3.11398
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- Article
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales.
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- Annals of Botany, 2010, v. 106, n. 3, p. 497, doi. 10.1093/aob/mcq129
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- Article
Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10757-1
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- Article
Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data.
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- Molecular Biology & Evolution, 2020, v. 37, n. 7, p. 2124, doi. 10.1093/molbev/msaa042
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- Article
Molecular Evolution across the Asteraceae: Micro- and Macroevolutionary Processes.
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- Molecular Biology & Evolution, 2011, v. 28, n. 12, p. 3225, doi. 10.1093/molbev/msr166
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- Article
Complementing model species with model clades.
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- Plant Cell, 2024, v. 36, n. 5, p. 1205, doi. 10.1093/plcell/koad260
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- Article
Animal chromosome counts reveal a similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants.
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- Journal of Evolutionary Biology, 2021, v. 34, n. 8, p. 1333, doi. 10.1111/jeb.13884
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- Article
Species‐tree topology impacts the inference of ancient whole‐genome duplications across the angiosperm phylogeny.
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- American Journal of Botany, 2024, v. 111, n. 8, p. 1, doi. 10.1002/ajb2.16378
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- Article
Doubling down on polyploid discoveries: Global advances in genomics and ecological impacts of polyploidy.
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- American Journal of Botany, 2024, v. 111, n. 8, p. 1, doi. 10.1002/ajb2.16395
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- Article
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales.
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- American Journal of Botany, 2020, v. 107, n. 8, p. 1148, doi. 10.1002/ajb2.1514
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- Article
Impact of whole‐genome duplication events on diversification rates in angiosperms.
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- American Journal of Botany, 2018, v. 105, n. 3, p. 348, doi. 10.1002/ajb2.1060
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- Article
Is hybridization driving the evolution of climatic niche in Alyssum montanum?
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- American Journal of Botany, 2016, v. 103, n. 7, p. 1348, doi. 10.3732/ajb.1500368
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- Article
Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae.
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- American Journal of Botany, 2016, v. 103, n. 7, p. 1203, doi. 10.3732/ajb.1600113
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- Article
Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study.
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- American Journal of Botany, 2016, v. 103, n. 7, p. 1139, doi. 10.3732/ajb.1600272
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- Article
A TOTAL EVIDENCE APPROACH TO UNDERSTANDING PHYLOGENETIC RELATIONSHIPS AND ECOLOGICAL DIVERSITY IN SELAGINELLA SUBG. TETRAGONOSTACHYS.
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- American Journal of Botany, 2013, v. 100, n. 8, p. 1672, doi. 10.3732/ajb.1200426
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- Article
GENOMICS OF COMPOSITAE WEEDS: EST LIBRARIES, MICROARRAYS, AND EVIDENCE OF INTROGRESSION.
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- American Journal of Botany, 2012, v. 99, n. 2, p. 209, doi. 10.3732/ajb.1100313
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- Article
NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform.
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- BMC Research Notes, 2010, v. 3, p. 217, doi. 10.1186/1756-0500-3-217
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- Article
A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-023-09894-1
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- Article
The Compositae Tree of Life in the age of phylogenomics.
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- Journal of Systematics & Evolution, 2017, v. 55, n. 4, p. 405, doi. 10.1111/jse.12265
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Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross.
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- Genome Biology & Evolution, 2022, v. 14, n. 3, p. 1, doi. 10.1093/gbe/evac017
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- Article
Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications.
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- Genome Biology & Evolution, 2018, v. 10, n. 11, p. 2882, doi. 10.1093/gbe/evy200
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- Article
The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution.
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- Genome Biology & Evolution, 2016, v. 8, n. 5, p. 1516, doi. 10.1093/gbe/evw091
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- Article
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
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- Genome Biology & Evolution, 2009, v. 1, p. 391, doi. 10.1093/gbe/evp040
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- Article
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years.
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- Molecular Biology & Evolution, 2008, v. 25, n. 11, p. 2445, doi. 10.1093/molbev/msn187
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- Article
Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa.
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- New Phytologist, 2021, v. 230, n. 1, p. 372, doi. 10.1111/nph.17194
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- Article
Lepidopteran Soral Crypsis on Caribbean Ferns.
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- Biotropica, 2005, v. 37, n. 2, p. 314, doi. 10.1111/j.1744-7429.2005.00040.x
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- Article
Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy.
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- Systematic Biology, 2010, v. 59, n. 2, p. 132, doi. 10.1093/sysbio/syp083
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- Article
Demographic history inference and the polyploid continuum.
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- Genetics, 2023, v. 224, n. 4, p. 1, doi. 10.1093/genetics/iyad107
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- Article
Maternal Expression Relaxes Constraint on Innovation of the Anterior Determinant, bicoid.
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- PLoS Genetics, 2005, v. 1, n. 5, p. 527, doi. 10.1371/journal.pgen.0010057
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- Article
On the relative abundance of autopolyploids and allopolyploids.
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- New Phytologist, 2016, v. 210, n. 2, p. 391, doi. 10.1111/nph.13698
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- Article
Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa ( Hydatellaceae, Nymphaeales).
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- New Phytologist, 2016, v. 210, n. 1, p. 310, doi. 10.1111/nph.13755
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- Article
Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014).
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- New Phytologist, 2015, v. 206, n. 1, p. 27, doi. 10.1111/nph.13192
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- Article
Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives.
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- Ecology Letters, 2020, v. 23, n. 1, p. 68, doi. 10.1111/ele.13402
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Chromosome‐scale inference of hybrid speciation and admixture with convolutional neural networks.
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- Molecular Ecology Resources, 2021, v. 21, n. 8, p. 2676, doi. 10.1111/1755-0998.13355
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- Article