Works matching AU Barkai, Naama

Results: 70

Efficiency and specificity in microRNA biogenesis.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 650, doi. 10.1038/nsmb.2293

By:

Barad, Omer;
Mann, Mati;
Chapnik, Elik;
Shenoy, Archana;
Blelloch, Robert;
Barkai, Naama;
Hornstein, Eran

Publication type:

Article

A two-step patterning process increases the robustness of periodic patterning in the fly eye.

Published in:

Journal of Biological Physics, 2016, v. 42, n. 3, p. 317, doi. 10.1007/s10867-016-9409-4

By:

Gavish, Avishai;
Barkai, Naama

Publication type:

Article

Disentangling signaling gradients generated by equivalent sources.

Published in:

Journal of Biological Physics, 2012, v. 38, n. 2, p. 267, doi. 10.1007/s10867-011-9240-x

By:

Rappaport, Noa;
Barkai, Naama

Publication type:

Article

Improved readout precision of the Bicoid morphogen gradient by early decoding.

Published in:

Journal of Biological Physics, 2012, v. 38, n. 2, p. 317, doi. 10.1007/s10867-011-9250-8

By:

Tamari, Zvi;
Barkai, Naama

Publication type:

Article

Physical aspects of precision in genetic regulation.

Published in:

Journal of Biological Physics, 2011, v. 37, n. 2, p. 213, doi. 10.1007/s10867-010-9208-2

By:

Tamari, Zvi;
Barkai, Naama;
Fouxon, Itzhak

Publication type:

Article

DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2427, doi. 10.1105/tpc.15.00391

By:

Shilo, Shay;
Melamed-Bessudo, Cathy;
Dorone, Yanniv;
Barkai, Naama;
Levy, Avraham A.

Publication type:

Article

A role for Rtt109 in buffering gene-dosage imbalance during DNA replication.

Published in:

Nucleus (1949-1034), 2016, v. 7, n. 4, p. 375, doi. 10.1080/19491034.2016.1216743

By:

Voichek, Yoav;
Bar-Ziv, Raz;
Barkai, Naama

Publication type:

Article

A genetic signature of interspecies variations in gene expression.

Published in:

Nature Genetics, 2006, v. 38, n. 7, p. 830, doi. 10.1038/ng1819

By:

Tirosh, Itay;
Weinberger, Adina;
Carmi, Miri;
Barkai, Naama

Publication type:

Article

Noise in protein expression scales with natural protein abundance.

Published in:

Nature Genetics, 2006, v. 38, n. 6, p. 636, doi. 10.1038/ng1807

By:

Bar-Even, Arren;
Paulsson, Johan;
Maheshri, Narendra;
Carmi, Miri;
O'Shea, Erin;
Pilpel, Yitzhak;
Barkai, Naama

Publication type:

Article

Revealing modular organization in the yeast transcriptional network.

Published in:

Nature Genetics, 2002, v. 31, n. 4, p. 370, doi. 10.1038/ng941

By:

Ihmels, Jan;
Friedlander, Gilgi;
Bergmann, Sven;
Sarig, Ofer;
Ziv, Yaniv;
Barkai, Naama

Publication type:

Article

The evolving doublecortin (DCX) superfamily.

Published in:

BMC Genomics, 2006, v. 7, p. 188, doi. 10.1186/1471-2164-7-188

By:

Reiner, Orly;
Coquelle, Frederic M;
Peter, Bastian;
Levy, Talia;
Kaplan, Anna;
Sapir, Tamar;
Orr, Irit;
Barkai, Naama;
Eichele, Gregor;
Bergmann, Sven

Publication type:

Article

Resolving noise–control conflict by gene duplication.

Published in:

PLoS Biology, 2019, v. 17, n. 11, p. 1, doi. 10.1371/journal.pbio.3000289

By:

Chapal, Michal;
Mintzer, Sefi;
Brodsky, Sagie;
Carmi, Miri;
Barkai, Naama

Publication type:

Article

Defining transcription modules using large-scale gene expression data.

Published in:

Bioinformatics, 2004, v. 20, n. 13, p. 1993, doi. 10.1093/bioinformatics/bth166

By:

Jan Ihmels;
Sven Bergmann;
Naama Barkai

Publication type:

Article

Evolution of binding preferences among whole-genome duplicated transcription factors.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.73225

By:

Gera, Tamar;
Jonas, Felix;
More, Roye;
Barkai, Naama

Publication type:

Article

Divergence and Selectivity of Expression-Coupled Histone Modifications in Budding Yeasts.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101538

By:

Mosesson, Yaron;
Voichek, Yoav;
Barkai, Naama

Publication type:

Article

Coordination of Gene Expression and Growth-Rate in Natural Populations of Budding Yeast.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088801

By:

Tamari, Zvi;
Rosin, Dalia;
Voichek, Yoav;
Barkai, Naama

Publication type:

Article

Reverse Engineering of the Spindle Assembly Checkpoint.

Published in:

PLoS ONE, 2009, v. 4, n. 8, p. 1, doi. 10.1371/journal.pone.0006495

By:

Doncic, Andreas;
Ben-Jacob, Eshel;
Einav, Shmuel;
Barkai, Naama

Publication type:

Article

A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress.

Published in:

EMBO Journal, 2021, v. 40, n. 21, p. 1, doi. 10.15252/embj.2021108439

By:

Hurst, Verena;
Challa, Kiran;
Jonas, Felix;
Forey, Romain;
Sack, Ragna;
Seebacher, Jan;
Schmid, Christoph D.;
Barkai, Naama;
Shimada, Kenji;
Gasser, Susan M.;
Poli, Jérôme

Publication type:

Article

Loss of growth homeostasis by genetic decoupling of cell division from biomass growth: implication for size control mechanisms.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 12, p. 1, doi. 10.15252/msb.20145513

By:

Schmidt‐Glenewinkel, Hannah;
Barkai, Naama

Publication type:

Article

Systematic identification of cell size regulators in budding yeast.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 11, p. n/a, doi. 10.15252/msb.20145345

By:

Soifer, Ilya;
Barkai, Naama

Publication type:

Article

Increasing population growth by asymmetric segregation of a limiting resource during cell division.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.13

By:

Avraham, Nurit;
Soifer, Ilya;
Carmi, Miri;
Barkai, Naama

Publication type:

Article

Inferring regulatory mechanisms from patterns of evolutionary divergence.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.60

By:

Tirosh, Itay;
Barkai, Naama

Publication type:

Article

Chromatin regulators as capacitors of interspecies variations in gene expression.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.84

By:

Tirosh, Itay;
Reikhav, Sharon;
Sigal, Nadejda;
Assia, Yael;
Barkai, Naama

Publication type:

Article

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.20

By:

Tirosh, Itay;
Sigal, Nadejda;
Barkai, Naama

Publication type:

Article

On the relation between promoter divergence and gene expression evolution.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 159, doi. 10.1038/msb4100198

By:

Tirosh, Itay;
Weinberger, Adina;
Bezalel, Dana;
Kaganovich, Mark;
Barkai, Naama

Publication type:

Article

Noise resistance in the spindle assembly checkpoint.

Published in:

Molecular Systems Biology, 2006, v. 2, n. 1, p. E1, doi. 10.1038/msb4100070

By:

Doncic, Andreas;
Ben‐Jacob, Eshel;
Barkai, Naama

Publication type:

Article

Histone exchange sensors reveal variant specific dynamics in mouse embryonic stem cells.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39477-3

By:

Dunjić, Marko;
Jonas, Felix;
Yaakov, Gilad;
More, Roye;
Mayshar, Yoav;
Rais, Yoach;
Orenbuch, Ayelet-Hashahar;
Cheng, Saifeng;
Barkai, Naama;
Stelzer, Yonatan

Publication type:

Article

Error Minimization in Lateral Inhibition Circuits.

Published in:

Science Signaling, 2010, v. 3, n. 129, p. 1, doi. 10.1126/scisignal.2000857

By:

Barad, Omer;
Rosin, Dalia;
Hornstein, Eran;
Barkai, Naama

Publication type:

Article

Early commitment and robust differentiation in colonic crypts.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 1, p. n/a, doi. 10.15252/msb.20167283

By:

Tóth, Beáta;
Ben‐Moshe, Shani;
Gavish, Avishai;
Barkai, Naama;
Itzkovitz, Shalev

Publication type:

Article

Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 1, p. e8, doi. 10.1371/journal.pcbi.0040008

By:

Hornung, Gil;
Barkai, Naama

Publication type:

Article

Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 8, p. e106, doi. 10.1371/journal.pcbi.0020106

By:

Bilu, Yonatan;
Shlomi, Tomer;
Barkai, Naama;
Ruppin, Eytan

Publication type:

Article

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.

Published in:

Nature Biotechnology, 2004, v. 22, n. 1, p. 86, doi. 10.1038/nbt918

By:

Barkai, Naama;
Levy, Ronen;
Ihmels, Jan

Publication type:

Article

The ups and downs of biological timers.

Published in:

Theoretical Biology & Medical Modelling, 2005, v. 2, p. 22, doi. 10.1186/1742-4682-2-22

By:

Rappaport, Noa;
Winter, Shay;
Barkai, Naama

Publication type:

Article

Evolution of Nucleosome Occupancy: Conservation of Global Properties and Divergence of Gene-Specific Patterns.

Published in:

Molecular & Cellular Biology, 2011, v. 31, n. 21, p. 4348, doi. 10.1128/MCB.05276-11

By:

Tsui, Kyle;
Dubuis, Sébastien;
Gebbia, Marinella;
Morse, Randall H.;
Barkai, Naama;
Tirosh, Itay;
Nislow, Corey

Publication type:

Article

Pre-Steady-State Decoding of the Bicoid Morphogen Gradient.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 232, doi. 10.1371/journal.pbio.0050046

By:

Bergmann, Sven;
Sandler, Oded;
Sberro, Hila;
Shnider, Sara;
Schejter, Eyal;
Shilo, Ben-Zion;
Barkai, Naama

Publication type:

Article

Similarities and Differences in Genome-Wide Expression Data of Six Organisms.

Published in:

PLoS Biology, 2004, v. 2, n. 1, p. 0001, doi. 10.1371/journal.pbio.0020009

By:

Bergmann, Sven;
Ihmels, Jan;
Barkai, Naama;
Eisen, Michael

Publication type:

Article

Similarities and Differences in Genome-Wide Expression Data of Six Organisms.

Published in:

PLoS Biology, 2003, v. 1, n. 12, p. 1, doi. 10.1371/journal.pbio.0020009

By:

Bergmann, Sven;
Ihmels, Jan;
Barkai, Naama

Publication type:

Article

Scaling of dorsal-ventral patterning in the Xenopus laevis embryo.

Published in:

BioEssays, 2014, v. 36, n. 2, p. 151, doi. 10.1002/bies.201300136

By:

Ben‐Zvi, Danny;
Fainsod, Abraham;
Shilo, Ben‐Zion;
Barkai, Naama

Publication type:

Article

Rapid evolutionary adaptation to growth on an 'unfamiliar' carbon source.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3010-x

By:

Tamari, Zvi;
Yona, Avihu H.;
Pilpel, Yitzhak;
Barkai, Naama

Publication type:

Article

Dual role of starvation signaling in promoting growth and recovery.

Published in:

PLoS Biology, 2017, v. 15, n. 12, p. 1, doi. 10.1371/journal.pbio.2002039

By:

Gurvich, Yonat;
Leshkowitz, Dena;
Barkai, Naama

Publication type:

Article

Coordination of gene expression with growth rate: A feedback or a feed-forward strategy?

Published in:

FEBS Letters, 2009, v. 583, n. 24, p. 3974, doi. 10.1016/j.febslet.2009.10.071

By:

Levy, Sagi;
Barkai, Naama

Publication type:

Article

Heterosis as a consequence of regulatory incompatibility.

Published in:

BMC Biology, 2017, v. 15, p. 1, doi. 10.1186/s12915-017-0373-7

By:

Herbst, Rebecca H.;
Bar-Zvi, Dana;
Reikhav, Sharon;
Soifer, Ilya;
Breker, Michal;
Jona, Ghil;
Shimoni, Eyal;
Schuldiner, Maya;
Levy, Avraham A.;
Barkai, Naama

Publication type:

Article

Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 2, doi. 10.1186/s12915-014-0079-z

By:

Gispan, Ariel;
Carmi, Miri;
Barkai, Naama

Publication type:

Article

Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

Published in:

Nature, 2002, v. 419, n. 6904, p. 304, doi. 10.1038/nature01061

By:

Eldar, Avigdor;
Dorfman, Rusian;
Weiss, Daniel;
Ashe, Hilary;
Shilo, Ben-Zion;
Barkai, Naama

Publication type:

Article

Circadian clocks limited by noise.

Published in:

Nature, 2000, v. 403, n. 6767, p. 267, doi. 10.1038/35002258

By:

Barkai, Naama;
Leibler, Stanislas

Publication type:

Article

Massively parallel binding assay (MPBA) reveals limited transcription factor binding cooperativity, challenging models of specificity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12227, doi. 10.1093/nar/gkae846

By:

Jana Lang, Tamar;
Brodsky, Sagie;
Manadre, Wajd;
Vidavski, Matan;
Valinsky, Gili;
Mindel, Vladimir;
Ilan, Guy;
Carmi, Miri;
Jonas, Felix;
Barkai, Naama

Publication type:

Article

Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12093, doi. 10.1093/nar/gkae718

By:

Mindel, Vladimir;
Brodsky, Sagie;
Yung, Hadas;
Manadre, Wajd;
Barkai, Naama

Publication type:

Article

Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8763, doi. 10.1093/nar/gkae521

By:

Hurieva, Bohdana;
Kumar, Divya Krishna;
Morag, Rotem;
Lupo, Offir;
Carmi, Miri;
Barkai, Naama;
Jonas, Felix

Publication type:

Article

Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 10, p. 5720, doi. 10.1093/nar/gkae249

By:

Chappleboim, Michal;
Naveh-Tassa, Segev;
Carmi, Miri;
Levy, Yaakov;
Barkai, Naama

Publication type:

Article

Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 5, p. 2260, doi. 10.1093/nar/gkad1191

By:

Mindel, Vladimir;
Brodsky, Sagie;
Cohen, Aileen;
Manadre, Wajd;
Jonas, Felix;
Carmi, Miri;
Barkai, Naama

Publication type:

Article