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Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea.
- Published in:
- Molecular Biology & Evolution, 2019, v. 36, n. 3, p. 435, doi. 10.1093/molbev/msy234
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- Article
Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case.
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- Proteomics, 2015, v. 15, n. 20, p. 3463, doi. 10.1002/pmic.201400563
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- Article
Atomic Structure, Defects, and Stacking of Clay Particles by Low-Dose, High Resolution (Cryo)-TEM.
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- Microscopy & Microanalysis, 2019, p. 1958, doi. 10.1017/S1431927618010279
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- Article
Atomic Structure, Defects, and Stacking of Clay Particles by Low-Dose, High Resolution (Cryo)-TEM.
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- 2018
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- Publication type:
- Abstract
Investigating Processes of Nanocrystal Formation and Transformation via Liquid Cell TEM.
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- Microscopy & Microanalysis, 2014, v. 20, n. 2, p. 425, doi. 10.1017/S1431927614000294
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- Article
Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism fromthe Deep Subsurface with Minimal Metabolism.
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- Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1115, doi. 10.1093/gbe/evy067
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- Article
Acid mine drainage biogeochemistry at Iron Mountain, California .
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- Geochemical Transactions, 2004, v. 5, p. 13, doi. 10.1186/1467-4866-5-13
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- Article
Special phase transformation and crystal growth pathways observed in nanoparticles.
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- Geochemical Transactions, 2003, v. 4, p. 20, doi. 10.1039/b309073f
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- Article
Quantitative determination of elemental sulfur at the arsenopyrite surface after oxidation by ferric iron: mechanistic implications.
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- Geochemical Transactions, 2001, v. 2, p. 1, doi. 10.1186/1467-4866-2-25
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- Publication type:
- Article
Quantitative determination of elemental sulfur at the arsenopyrite surface after oxidation by ferric iron: mechanistic implications.
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- Geochemical Transactions, 2001, v. 2, p. 25, doi. 10.1039/b104111h
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- Article
Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1420, doi. 10.1186/1471-2164-15-1107
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- Article
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-485
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- Article
Improved genome annotation through untargeted detection of pathway-specific metabolites.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S6
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- Article
Unusual biology across a group comprising more than 15% of domain Bacteria.
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- Nature, 2015, v. 523, n. 7559, p. 208, doi. 10.1038/nature14486
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- Article
Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma.
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- Genetics, 2007, v. 177, n. 1, p. 407, doi. 10.1534/genetics.107.072892
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- Article
Structure of the bacterial ribosome at 2 Å resolution.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.60482
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- Publication type:
- Article
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.05477
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- Article
Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes.
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- Nucleic Acids Research, 2023, v. 52, n. 22, p. 12414, doi. 10.1093/nar/gkad1053
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- Article
Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome.
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- Nucleic Acids Research, 2023, v. 51, n. 4, p. 1880, doi. 10.1093/nar/gkac1273
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- Article
The distinction of CPR bacteria from other bacteria based on protein family content.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12171-z
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- Article
Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation.
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- PLoS Biology, 2008, v. 6, n. 7, p. e177, doi. 10.1371/journal.pbio.0060177
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- Article
Alum Addition Triggers Hypoxia in an Engineered Pit Lake.
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- Microorganisms, 2022, v. 10, n. 3, p. 510, doi. 10.3390/microorganisms10030510
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- Article
Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01085-y
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- Article
Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00957-z
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- Article
Diverse ATPase Proteins in Mobilomes Constitute a Large Potential Sink for Prokaryotic Host ATP.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.691847
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- Article
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.660052
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- Article
Thiocyanate and Organic Carbon Inputs Drive Convergent Selection for Specific Autotrophic Afipia and Thiobacillus Strains Within Complex Microbiomes.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.643368
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- Article
Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities.
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- Frontiers in Microbiology, 2020, p. N.PAG, doi. 10.3389/fmicb.2020.01694
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- Article
Phage mutations in response to CRISPR diversification in a bacterial population.
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- Environmental Microbiology, 2013, v. 15, n. 2, p. 463, doi. 10.1111/j.1462-2920.2012.02879.x
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- Article
Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.
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- Environmental Microbiology, 2011, v. 13, n. 8, p. 2279, doi. 10.1111/j.1462-2920.2011.02486.x
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- Article
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.
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- Environmental Microbiology, 2009, v. 11, n. 2, p. 313, doi. 10.1111/j.1462-2920.2008.01769.x
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- Article
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.
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- Environmental Microbiology, 2008, v. 10, n. 1, p. 200, doi. 10.1111/j.1462-2920.2007.01444.x
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- Article
Characteristics of attachment and growth of Thiobacillus caldus on sulphide minerals: a chemotactic response to sulphur minerals?
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- Environmental Microbiology, 2000, v. 2, n. 3, p. 324, doi. 10.1046/j.1462-2920.2000.00111.x
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- Article
A widespread group of large plasmids in methanotrophic Methanoperedens archaea.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34588-9
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- Article
Experimental validation that human microbiome phages use alternative genetic coding.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6
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- Article
Ion complexation waves emerge at the curved interfaces of layered minerals.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31004-0
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- Article
Insights into methionine S-methylation in diverse organisms.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30491-5
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- Article
Subsurface carbon monoxide oxidation capacity revealed through genome‐resolved metagenomics of a carboxydotroph.
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- Environmental Microbiology Reports, 2020, v. 12, n. 5, p. 525, doi. 10.1111/1758-2229.12868
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- Article
Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities.
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- Environmental Microbiology Reports, 2012, v. 4, n. 1, p. 36, doi. 10.1111/j.1758-2229.2011.00275.x
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- Publication type:
- Article
Persisting Viral Sequences Shape Microbial CRISPR-based Immunity.
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- PLoS Computational Biology, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pcbi.1002475
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- Article
A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes.
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- PLoS Computational Biology, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pcbi.1002230
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- Article
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism.
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- Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-023-01704-w
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- Article
Using strain-resolved analysis to identify contamination in metagenomics data.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01477-2
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- Article
Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01416-7
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- Publication type:
- Article
Genome-resolved metagenomics of a bioremediation system for degradation of thiocyanate in mine water containing suspended solid tailings.
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- MicrobiologyOpen, 2017, v. 6, n. 3, p. n/a, doi. 10.1002/mbo3.446
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- Article
pH and thiosulfate dependent microbial sulfur oxidation strategies across diverse environments.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1426584
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- Publication type:
- Article
Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01435
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- Article
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.
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- Nature Communications, 2013, v. 4, n. 8, p. 2120, doi. 10.1038/ncomms3120
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- Article
Strong bias in the bacterial CRISPR elements that confer immunity to phage.
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- Nature Communications, 2013, v. 4, n. 2, p. 1430, doi. 10.1038/ncomms2440
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- Article
Ecological distribution and population physiology defined by proteomics in a natural microbial community.
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- Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.30
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- Article