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Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.
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- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0638-1
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- Article
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0499-z
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- Article
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0493-5
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- Article
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.
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- Microbiome, 2018, v. 6, n. 1, p. 1, doi. 10.1186/s40168-018-0488-2
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- Publication type:
- Article
Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals speciesspecific metabolic shifts and variabilities during early life.
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- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0290-6
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- Publication type:
- Article
Microbial communities across a hillslope‐riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock.
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- Ecology & Evolution (20457758), 2019, v. 9, n. 12, p. 6869, doi. 10.1002/ece3.5254
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- Article
A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40835-4
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- Publication type:
- Article
Vitamin interdependencies predicted by metagenomics-informed network analyses and validated in microbial community microcosms.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40360-4
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- Article
O<sub>2</sub> partitioning of sulfur oxidizing bacteria drives acidity and thiosulfate distributions in mining waters.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37426-8
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- Publication type:
- Article
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.
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- Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r44
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- Article
Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1420, doi. 10.1186/1471-2164-15-1107
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- Publication type:
- Article
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-485
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- Publication type:
- Article
Improved genome annotation through untargeted detection of pathway-specific metabolites.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S6
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- Publication type:
- Article
Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes.
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- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01841-0
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- Article
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea.
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- Molecular Biology & Evolution, 2019, v. 36, n. 3, p. 435, doi. 10.1093/molbev/msy234
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- Article
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.
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- 2007
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- Publication type:
- Letter
Community structure and metabolism through reconstruction of microbial genomes from the environment.
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- Nature, 2004, v. 428, n. 6978, p. 37, doi. 10.1038/nature02340
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- Article
Water-driven structure transformation in nanoparticles at room temperature.
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- Nature, 2003, v. 424, n. 6952, p. 1025, doi. 10.1038/nature01845
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- Article
Nanometre-size products of uranium bioreduction.
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- Nature, 2002, v. 419, n. 6903, p. 134, doi. 10.1038/419134a
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- Article
Electrodic voltages accompanying stimulated bioremediation of a uranium-contaminated aquifer.
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- Journal of Geophysical Research. Biogeosciences, 2010, v. 115, n. G2, p. n/a, doi. 10.1029/2009JG001142
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- Article
Galvanic interpretation of self-potential signals associated with microbial sulfate-reduction.
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- Journal of Geophysical Research. Biogeosciences, 2007, v. 112, n. G3, p. n/a, doi. 10.1029/2007JG000440
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- Article
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00238
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- Publication type:
- Article
Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant.
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- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00654
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- Publication type:
- Article
Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00231
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- Publication type:
- Article
Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes.
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- Nucleic Acids Research, 2023, v. 52, n. 22, p. 12414, doi. 10.1093/nar/gkad1053
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- Article
Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome.
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- Nucleic Acids Research, 2023, v. 51, n. 4, p. 1880, doi. 10.1093/nar/gkac1273
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- Publication type:
- Article
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02018-w
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- Publication type:
- Article
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.
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- Nature Communications, 2016, v. 7, n. 10, p. 13219, doi. 10.1038/ncomms13219
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- Publication type:
- Article
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.
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- Nature Communications, 2016, v. 7, n. 2, p. 10613, doi. 10.1038/ncomms10613
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- Publication type:
- Article
Diverse uncultivated ultra-small bacterial cells in groundwater.
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- Nature Communications, 2015, v. 6, n. 2, p. 6372, doi. 10.1038/ncomms7372
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- Article
Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community.
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- Nature Communications, 2014, v. 5, n. 7, p. 4405, doi. 10.1038/ncomms5405
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- Publication type:
- Article
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.
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- Nature Communications, 2013, v. 4, n. 8, p. 2120, doi. 10.1038/ncomms3120
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- Publication type:
- Article
Strong bias in the bacterial CRISPR elements that confer immunity to phage.
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- Nature Communications, 2013, v. 4, n. 2, p. 1430, doi. 10.1038/ncomms2440
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- Publication type:
- Article
Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism fromthe Deep Subsurface with Minimal Metabolism.
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- Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1115, doi. 10.1093/gbe/evy067
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- Publication type:
- Article
A high-throughput de novo sequencing approachfor shotgun proteomics using high-resolutiontandem mass spectrometry.
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- BMC Bioinformatics, 2010, v. 11, p. 118, doi. 10.1186/1471-2105-11-118
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- Article
Community genomics in microbial ecology and evolution.
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- Nature Reviews Microbiology, 2005, v. 3, n. 6, p. 489, doi. 10.1038/nrmicro1157
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- Publication type:
- Article
Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.66878
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- Article
Structure of the bacterial ribosome at 2 Å resolution.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.60482
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- Article
Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2697, doi. 10.1038/ismej.2015.66
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- Article
Aquifer environment selects for microbial species cohorts in sediment and groundwater.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 8, p. 1846, doi. 10.1038/ismej.2015.2
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- Article
Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 4, p. 1014, doi. 10.1038/ismej.2014.200
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- Publication type:
- Article
Elevated temperature alters proteomic responses of individual organisms within a biofilm community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 180, doi. 10.1038/ismej.2014.113
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- Publication type:
- Article
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1452, doi. 10.1038/ismej.2013.249
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- Publication type:
- Article
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 5, p. 979, doi. 10.1038/ismej.2013.221
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- Publication type:
- Article
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 800, doi. 10.1038/ismej.2012.148
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- Publication type:
- Article
Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 2, p. 338, doi. 10.1038/ismej.2012.103
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- Publication type:
- Article
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 1, p. 81, doi. 10.1038/ismej.2011.78
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- Publication type:
- Article
Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 7, p. 1152, doi. 10.1038/ismej.2010.200
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- Publication type:
- Article
Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 11, p. 1398, doi. 10.1038/ismej.2010.64
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- Publication type:
- Article
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 5, p. 599, doi. 10.1038/ismej.2009.158
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- Article