Works by Banerjee, Ipsita A.

Results: 62

Exploration of type II and III collagen binding interactions with short peptide-phenyl pyrazole conjugates via docking, molecular dynamics and laboratory experiments.

Published in:

Soft Materials, 2023, v. 21, n. 1, p. 53, doi. 10.1080/1539445X.2022.2147946

By:

Hart, Lucy R.;
Lebedenko, Charlotta G.;
Goncalves, Beatriz G.;
Rico, Mia I.;
Lambo, Dominic J.;
Perez, Diego S.;
Banerjee, Ipsita A.

Publication type:

Article

Design of peptide-PEG-Thiazole bound polypyrrole supramolecular assemblies for enhanced neuronal cell interactions.

Published in:

Soft Materials, 2021, v. 19, n. 4, p. 428, doi. 10.1080/1539445X.2020.1853162

By:

Broas, Sarah M.;
Banerjee, Ipsita A.

Publication type:

Article

Self-assembled peptide-conjugated rosemary extract derivatives as drug delivery vehicles for targeting tumor cells.

Published in:

Soft Materials, 2022, v. 20, n. 1, p. 109, doi. 10.1080/1539445X.2021.1926282

By:

Hart, Lucy R.;
Mitchell, Saige M.;
McCallum, Paige A.;
Daso, Rachel E.;
Banerjee, Ipsita A.

Publication type:

Article

Development of new amphiphilic bio-organic assemblies for potential applications in iron-binding and targeting tumor cells.

Published in:

Soft Materials, 2019, v. 17, n. 1, p. 57, doi. 10.1080/1539445X.2018.1548357

By:

Hugo, Mindy M.;
Banerjee, Ipsita A.

Publication type:

Article

Development of Peptide Conjugated Chlorogenic Acid Nanoassemblies for Targeting Tumorigenic Cells.

Published in:

Soft Materials, 2015, v. 13, n. 3, p. 150, doi. 10.1080/1539445X.2015.1045076

By:

Sortino, Rachel M.;
Romanelli, Steven M.;
Knoll, Grant A.;
Banerjee, Ipsita A.

Publication type:

Article

Regulatory interactions maintaining self-renewal of human embryonic stem cells as revealed through a systems analysis of PI3K/AKT pathway.

Published in:

Bioinformatics, 2014, v. 30, n. 16, p. 2334, doi. 10.1093/bioinformatics/btu209

By:

Mathew, Shibin;
Sundararaj, Sankaramanivel;
Mamiya, Hikaru;
Banerjee, Ipsita

Publication type:

Article

An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells.

Published in:

Bioinformatics, 2010, v. 26, n. 10, p. 1332, doi. 10.1093/bioinformatics/btq139

By:

Banerjee, Ipsita;
Maiti, Spandan;
Parashurama, Natesh;
Yarmush, Martin

Publication type:

Article

Alzheimer's Disease: Current Perspectives and Advances in Physiological Modeling.

Published in:

Bioengineering (Basel), 2021, v. 8, n. 12, p. 1, doi. 10.3390/bioengineering8120211

By:

Boder, E. Josephine;
Banerjee, Ipsita A.

Publication type:

Article

Development of Self-Assembled Nanoribbon Bound Peptide-Polyaniline Composite Scaffolds and Their Interactions with Neural Cortical Cells.

Published in:

Bioengineering (Basel), 2018, v. 5, n. 1, p. 1, doi. 10.3390/bioengineering5010006

By:

Smith, Andrew M.;
Pajovich, Harrison T.;
Banerjee, Ipsita A.

Publication type:

Article

Exploring the binding interactions of NOP receptor with designed natural phytochemical-neuropeptide conjugates: an in silico and SPR study.

Published in:

Applied Biological Chemistry, 2024, v. 67, n. 1, p. 1, doi. 10.1186/s13765-024-00876-9

By:

Murray, Molly E.;
Goncalves, Beatriz G.;
Biggs, Mary A.;
Frantzeskos, Sophia A.;
Lebedenko, Charlotta G.;
Banerjee, Ipsita A.

Publication type:

Article

Inducing endoderm differentiation by modulating mechanical properties of soft substrates.

Published in:

Journal of Tissue Engineering & Regenerative Medicine, 2015, v. 9, n. 1, p. 1, doi. 10.1002/term.1602

By:

Jaramillo, Maria;
Singh, Satish S.;
Velankar, Sachin;
Kumta, Prashant N.;
Banerjee, Ipsita

Publication type:

Article

Impact of co-culture on pancreatic differentiation of embryonic stem cells.

Published in:

Journal of Tissue Engineering & Regenerative Medicine, 2011, v. 5, n. 4, p. 313, doi. 10.1002/term.317

By:

Banerjee, Ipsita;
Sharma, Nripen;
Yarmush, Martin

Publication type:

Article

Investigation of Self‐Assembly of Symmetric and Asymmetric Peptide Bolaamphiphiles by COSMO‐RS and Atomistic Simulations and Their Interactions with POPC Bilayers.

Published in:

Macromolecular Theory & Simulations, 2022, v. 31, n. 2, p. 1, doi. 10.1002/mats.202100066

By:

Lebedenko, Charlotta G.;
Banerjee, Ipsita A.

Publication type:

Article

Targeting Breast and Gynecologic Cancers: The Role of Natural Products with Emphasis on Cinnamon and Its Derivatives—Advances in Nanoscale Therapeutics and Adjuvant Strategies.

Published in:

Macromol, 2025, v. 5, n. 1, p. 13, doi. 10.3390/macromol5010013

By:

Biggs, Mary A.;
Banerjee, Ipsita A.

Publication type:

Article

Interactions of amyloid Aβ(1-42) peptide with self-assembled peptide nanospheres.

Published in:

Journal of Peptide Science, 2011, v. 17, n. 1, p. 14, doi. 10.1002/psc.1284

By:

Smoak, Evan M.;
Dabakis, Melanie P.;
Henricus, Marsiyana M.;
Tamayev, Robert;
Banerjee, Ipsita A.

Publication type:

Article

Potential for Pancreatic Maturation of Differentiating Human Embryonic Stem Cells Is Sensitive to the Specific Pathway of Definitive Endoderm Commitment.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094307

By:

Jaramillo, Maria;
Mathew, Shibin;
Task, Keith;
Barner, Sierra;
Banerjee, Ipsita

Publication type:

Article

Extracellular Matrix Aggregates from Differentiating Embryoid Bodies as a Scaffold to Support ESC Proliferation and Differentiation.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061856

By:

Goh, Saik-Kia;
Olsen, Phillip;
Banerjee, Ipsita

Publication type:

Article

Analysis of Regulatory Network Involved in Mechanical Induction of Embryonic Stem Cell Differentiation.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035700

By:

Xinan Zhang;
Maria Jaramillo;
Singh, Satish;
Kumta, Prashant;
Banerjee, Ipsita

Publication type:

Article

Population Based Model of Human Embryonic Stem Cell (hESC) Differentiation during Endoderm Induction.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032975

By:

Task, Keith;
Jaramillo, Maria;
Banerjee, Ipsita

Publication type:

Article

Design and investigation of celastrol‐peptide nanoassemblies and their binding interactions with superoxide dismutase 1 and its mutants.

Published in:

Nano Select, 2024, v. 5, n. 11, p. 1, doi. 10.1002/nano.202400042

By:

Goncalves, Beatriz G.;
Phan, Chau Anh N.;
Biggs, Mary A.;
Hunt, Hannah L.;
Banerjee, Ipsita A.

Publication type:

Article

A computational and laboratory approach for the investigation of interactions of peptide conjugated natural terpenes with EpHA2 receptor.

Published in:

Journal of Molecular Modeling, 2023, v. 29, n. 7, p. 1, doi. 10.1007/s00894-023-05596-3

By:

Goncalves, Beatriz G.;
Banerjee, Ipsita A.

Publication type:

Article

Design of short peptides and peptide amphiphiles as collagen mimics and an investigation of their interactions with collagen using molecular dynamics simulations and docking studies.

Published in:

Journal of Molecular Modeling, 2023, v. 29, n. 1, p. 1, doi. 10.1007/s00894-022-05419-x

By:

Heise, Ryan M.;
Banerjee, Ipsita A.

Publication type:

Article

In silico studies of interactions of peptide-conjugated cholesterol metabolites and betulinic acid with EGFR, LDR, and N-terminal fragment of CCKA receptors.

Published in:

Journal of Molecular Modeling, 2022, v. 28, n. 1, p. 1, doi. 10.1007/s00894-021-05007-5

By:

Bashant, Madeline M.;
Mitchell, Saige M.;
Hart, Lucy R.;
Lebedenko, Charlotta G.;
Banerjee, Ipsita A.

Publication type:

Article

A metabolic dysfunction-associated steatotic liver acinus biomimetic induces pancreatic islet dysfunction in a coupled microphysiology system.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07006-7

By:

Aleman, Julio;
K, Ravikumar;
Wiegand, Connor;
Schurdak, Mark E.;
Vernetti, Lawrence;
Gavlock, Dillon;
Reese, Celeste;
DeBiasio, Richard;
LaRocca, Greg;
Angarita, Yulder Daniel;
Gough, Albert;
Soto-Gutierrez, Alejandro;
Behari, Jaideep;
Yechoor, Vijay K.;
Miedel, Mark T.;
Stern, Andrew M.;
Banerjee, Ipsita;
Taylor, D. Lansing

Publication type:

Article

Biomineralization of Fucoidan-Peptide Blends and Their Potential Applications in Bone Tissue Regeneration.

Published in:

Journal of Functional Biomaterials, 2017, v. 8, n. 3, p. 41, doi. 10.3390/jfb8030041

By:

Pajovich, Harrison T.;
Banerjee, Ipsita A.

Publication type:

Article

Model Independent Parametric Decision Making.

Published in:

Annals of Operations Research, 2004, v. 132, n. 1-4, p. 135, doi. 10.1023/B:ANOR.0000045280.55945.e8

By:

Banerjee, Ipsita;
Ierapetritou, Marianthi G.

Publication type:

Article

The underlying causes, treatment options of gut microbiota and food habits in type 2 diabetes mellitus: a narrative review.

Published in:

Journal of Basic & Clinical Physiology & Pharmacology, 2024, v. 35, n. 3, p. 153, doi. 10.1515/jbcpp-2024-0043

By:

Adhikary, Krishnendu;
Sarkar, Riya;
Maity, Sriparna;
Banerjee, Ipsita;
Chatterjee, Prity;
Bhattacharya, Koushik;
Ahuja, Deepika;
Sinha, Nirmalya Kumar;
Maiti, Rajkumar

Publication type:

Article

Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences.

Published in:

BMC Systems Biology, 2012, v. 6, n. 1, p. 154, doi. 10.1186/1752-0509-6-154

By:

Mathew, Shibin;
Jaramillo, Maria;
Xinan Zhang;
Li Ang Zhang;
Soto-Guti‚rrez, Alejandro;
Banerjee, Ipsita

Publication type:

Article

An integer optimization algorithm for robust identification of non-linear gene regulatory networks.

Published in:

BMC Systems Biology, 2012, v. 6, n. 1, p. 119, doi. 10.1186/1752-0509-6-119

By:

Chemmangattuvalappil, Nishanth;
Task, Keith;
Banerjee, Ipsita

Publication type:

Article

Fetoprotein Derived Short Peptide Coated Nanostructured Amphiphilic Surfaces for Targeting Mouse Breast Cancer Cells.

Published in:

International Journal of Nanoscience, 2017, v. 16, n. 1, p. -1, doi. 10.1142/S0219581X1650023X

By:

Brown, Alexandra M.;
Miranda-Alarćon, Yoliem S.;
Knoll, Grant A.;
Santora, Anthony M.;
Banerjee, Ipsita A.

Publication type:

Article

ELLAGIC ACID DIRECTED GROWTH OF BIMETALLIC NANOPARTICLES AND THEIR CATALYTIC APPLICATIONS.

Published in:

International Journal of Nanoscience, 2013, v. 12, n. 1, p. -1, doi. 10.1142/S0219581X12500378

By:

BARNABY, STACEY N.;
SARKER, NAZMUL H.;
BANERJEE, IPSITA A.

Publication type:

Article

Communication Plan for Sustainable Public Health Advocacy during Natural Calamities- A Case Study of 'Amphan' in West Bengal.

Published in:

Global Media Journal: Indian Edition, 2022, v. 14, n. 2, p. 1

By:

Das, Rajesh;
Banerjee, Ipsita

Publication type:

Article

High Throughput Generation of Spherical and Non-spherical Stem-cell Tissue Constructs using 3D Printed Templates.

Published in:

Trends in Biomaterials & Artificial Organs, 2021, v. 35, n. 5, p. 461

By:

Ravikumar, K.;
Wiegand, Connor;
Banerjee, Ipsita

Publication type:

Article

Biomimetic growth of gallic acid-ZnO hybrid assemblies and their applications.

Published in:

Journal of Nanoparticle Research, 2012, v. 14, n. 4, p. 1, doi. 10.1007/s11051-012-0773-0

By:

Sarker, Nazmul;
Barnaby, Stacey;
Fath, Karl;
Frayne, Stephen;
Nakatsuka, Nako;
Banerjee, Ipsita

Publication type:

Article

Design and Development of Natural-Product-Derived Nanoassemblies and Their Interactions with Alpha Synuclein.

Published in:

Biomimetics (2313-7673), 2025, v. 10, n. 2, p. 82, doi. 10.3390/biomimetics10020082

By:

Banerjee, Ipsita A.;
Das, Amrita;
Biggs, Mary A.;
Phan, Chau Anh N.;
Cutter, Liana R.;
Ren, Alexandra R.

Publication type:

Article

Exploring the Potential of Biomimetic Peptides in Targeting Fibrillar and Filamentous Alpha-Synuclein—An In Silico and Experimental Approach to Parkinson's Disease.

Published in:

Biomimetics (2313-7673), 2024, v. 9, n. 11, p. 705, doi. 10.3390/biomimetics9110705

By:

Frantzeskos, Sophia A.;
Biggs, Mary A.;
Banerjee, Ipsita A.

Publication type:

Article

Developing New Peptides and Peptide–Drug Conjugates for Targeting the FGFR2 Receptor-Expressing Tumor Cells and 3D Spheroids.

Published in:

Biomimetics (2313-7673), 2024, v. 9, n. 9, p. 515, doi. 10.3390/biomimetics9090515

By:

Biggs, Mary A.;
Das, Amrita;
Goncalves, Beatriz G.;
Murray, Molly E.;
Frantzeskos, Sophia A.;
Hunt, Hannah L.;
Phan, Chau Ahn N.;
Banerjee, Ipsita A.

Publication type:

Article

Development of Self-Assembled Biomimetic Nanoscale Collagen-like Peptide-Based Scaffolds for Tissue Engineering: An In Silico and Laboratory Study.

Published in:

Biomimetics (2313-7673), 2023, v. 8, n. 7, p. 548, doi. 10.3390/biomimetics8070548

By:

Goncalves, Beatriz G.;
Heise, Ryan M.;
Banerjee, Ipsita A.

Publication type:

Article

Bioengineering Thymus Organoids to Restore Thymic Function and Induce Donor-Specific Immune Tolerance to Allografts.

Published in:

Molecular Therapy, 2015, v. 23, n. 7, p. 1262, doi. 10.1038/mt.2015.77

By:

Fan, Yong;
Tajima, Asako;
Goh, Saik Kia;
Geng, Xuehui;
Gualtierotti, Giulio;
Grupillo, Maria;
Coppola, Antonina;
Bertera, Suzanne;
Rudert, William A;
Banerjee, Ipsita;
Bottino, Rita;
Trucco, Massimo

Publication type:

Article

Network Analysis Identifies Crosstalk Interactions Governing TGF-β Signaling Dynamics during Endoderm Differentiation of Human Embryonic Stem Cells.

Published in:

Processes, 2015, v. 3, n. 2, p. 286, doi. 10.3390/pr3020286

By:

Mathew, Shibin;
Sundararaj, Sankaramanivel;
Banerjee, Ipsita

Publication type:

Article

Growth of Self-Assembled Bio-Organic Nanomatrices for Skin Tissue Engineering - An in vitro Study.

Published in:

Nano Life, 2016, v. 6, n. 1, p. -1, doi. 10.1142/S1793984416500021

By:

Miranda-Alarcón, Yoliem S.;
Brown, Alexandra M.;
Santora, Anthony M.;
Banerjee, Ipsita A.

Publication type:

Article

Self‐Assembled Peptide‐Based Biocomposites for Near‐Infrared Light Triggered Drug Release to Tumor Cells.

Published in:

Biotechnology Journal, 2020, v. 15, n. 12, p. 1, doi. 10.1002/biot.202000128

By:

Daso, Rachel E.;
Banerjee, Ipsita A.

Publication type:

Article

Development of an Alginate Array Platform to Decouple the Effect of Multiparametric Perturbations on Human Pluripotent Stem Cells During Pancreatic Differentiation.

Published in:

Biotechnology Journal, 2018, v. 13, n. 2, p. 1, doi. 10.1002/biot.201700099

By:

Richardson, Thomas C.;
Mathew, Shibin;
Candiello, Joseph E.;
Goh, Saik K.;
Kumta, Prashant N.;
Banerjee, Ipsita

Publication type:

Article

Design and self-assembly of new peptides and peptide bolaamphiphiles as antioxidant biocomposite scaffolds for potential tissue regeneration applications – a replica modeling and experimental study.

Published in:

Soft Materials, 2024, v. 22, n. 4, p. 259, doi. 10.1080/1539445X.2024.2413063

By:

Hunt, Hannah L.;
Biggs, Mary A.;
Goncavles, Beatriz G.;
Banerjee, Ipsita A.

Publication type:

Article

Morphology Controlled Growth of Chitosan-Bound Microtubes and a Study of their Biocompatibility and Antibacterial Activity.

Published in:

Macromolecular Bioscience, 2009, v. 9, n. 4, p. 317, doi. 10.1002/mabi.200800220

By:

Henricus, Marsiyana M.;
Fath, Karl R.;
Menzenski, Monica Z.;
Banerjee, Ipsita A.

Publication type:

Article

Harnessing Probiotics for Human Health: Exploring their Role in Nutritional and Therapeutic Insights.

Published in:

Uttar Pradesh Journal of Zoology, 2025, v. 46, n. 9, p. 9, doi. 10.56557/upjoz/2025/v46i94919

By:

De, Sneha;
Banerjee, Ipsita;
Sarkar, Sampita

Publication type:

Article

Early differentiation patterning of mouse embryonic stem cells in response to variations in alginate substrate stiffness.

Published in:

Journal of Biological Engineering, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1754-1611-7-9

By:

Candiello, Joseph;
Singh, Satish S.;
Task, Keith;
Kumta, Prashant N.;
Banerjee, Ipsita

Publication type:

Article

New Photoactivators for Multiphoton Excited Three-dimensional Submicron Cross-linking of Proteins: Bovine Serum Albumin and Type 1 Collagen.

Published in:

Photochemistry & Photobiology, 2002, v. 76, n. 2, p. 135, doi. 10.1562/0031-8655(2002)0760135NPFMET2.0.CO2

By:

Pitts, Jonathan D.;
Howell, Amy R.;
Taboada, Rosa;
Banerjee, Ipsita;
Wang, Jun;
Goodman, Steven L.;
Campagnola, Paul J.

Publication type:

Article

Self-assembled phenylisoxazole-peptide hybrid assemblies and their interactions with breast and ovarian tumor cells.

Published in:

International Journal of Polymeric Materials & Polymeric Biomaterials, 2019, v. 68, n. 16, p. 978, doi. 10.1080/00914037.2018.1525542

By:

Hurley, Sara K.;
Cutrone, Nicole M.;
Fath, Karl R.;
Pajovich, Harrison T.;
Garcia, Jeremy;
Smith, Andrew M.;
Banerjee, Ipsita A.

Publication type:

Article

Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.89292

By:

Bimai, Ornella;
Banerjee, Ipsita;
Grinberg, Inna Rozman;
Ping Huang;
Hultgren, Lucas;
Ekström, Simon;
Lundin, Daniel;
Sjöberg, Britt-Marie;
Logan, Derek T.

Publication type:

Article