Works by Bandyopadhyay, Sanghamitra

Results: 93

DNA barcoding to map the microbial communities: current advances and future directions.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 8, p. 3425, doi. 10.1007/s00253-014-5550-9

By:

Chakraborty, Chiranjib;
Doss, C.;
Patra, Bidhan;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Network based approach for drug target identification in early onset Parkinson's disease.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-024-83178-w

By:

Dey, Ashmita;
Chakraborty, Mrittika;
Maulik, Ujjwal;
Bandyopadhyay, Sanghamitra

Publication type:

Article

MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets.

Published in:

Scientific Reports, 2015, p. 8004, doi. 10.1038/srep08004

By:

Bandyopadhyay, Sanghamitra;
Ghosh, Dip;
Mitra, Ramkrishna;
Zhao, Zhongming

Publication type:

Article

Exploring the potential anti-senescence effects of soybean-derived peptide Soymetide in mice hippocampal neurons via the Wnt/β-catenin pathway.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1510337

By:

Garg, Asmita;
Saroj, Jyotshana;
Tiwari, Saurabh;
Das, Uttara;
Shukla, Neetu;
Ghosh, Jimut Kanti;
Bandyopadhyay, Sanghamitra

Publication type:

Article

ParSel: Parallel Selection of Micro-RNAs for Survival Classification in Cancers.

Published in:

Molecular Informatics, 2017, v. 36, n. 7, p. n/a, doi. 10.1002/minf.201600141

By:

Sinha, Debajyoti;
Sengupta, Debarka;
Bandyopadhyay, Sanghamitra

Publication type:

Article

GRF: A Greedy Rank Fusion Algorithm for Combining MicroRNA Target Orderings.

Published in:

Molecular Informatics, 2013, v. 32, n. 8, p. 685, doi. 10.1002/minf.201200165

By:

Bandyopadhyay, Sanghamitra;
Sengupta, Debarka;
Maulik, Ujjwal

Publication type:

Article

Circulating Interleukin-8 Dynamics Parallels Disease Course and Is Linked to Clinical Outcomes in Severe COVID-19.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 2, p. 549, doi. 10.3390/v15020549

By:

D'Rozario, Ranit;
Raychaudhuri, Deblina;
Bandopadhyay, Purbita;
Sarif, Jafar;
Mehta, Priyanka;
Liu, Chinky Shiu Chen;
Sinha, Bishnu Prasad;
Roy, Jayasree;
Bhaduri, Ritwik;
Das, Monidipa;
Bandyopadhyay, Sanghamitra;
Paul, Shekhar Ranjan;
Chatterjee, Shilpak;
Pandey, Rajesh;
Ray, Yogiraj;
Ganguly, Dipyaman

Publication type:

Article

Genetic algorithms for clustering and fuzzy clustering.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2012, v. 2, n. 3, p. 285, doi. 10.1002/widm.1051

By:

Bandyopadhyay, Sanghamitra

Publication type:

Article

Genetic algorithms for clustering and fuzzy clustering.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2011, v. 1, n. 6, p. 524, doi. 10.1002/widm.47

By:

Bandyopadhyay, Sanghamitra

Publication type:

Article

Feature selection using feature dissimilarity measure and density-based clustering: Application to biological data.

Published in:

Journal of Biosciences, 2015, v. 40, n. 4, p. 721, doi. 10.1007/s12038-015-9556-y

By:

Sengupta, Debarka;
Aich, Indranil;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Preface.

Published in:

Journal of Biosciences, 2015, v. 40, n. 4, p. 667, doi. 10.1007/s12038-015-9565-x

By:

Bandyopadhyay, Sanghamitra;
De, Rajat

Publication type:

Article

Gene ordering in partitive clustering using microarray expressions.

Published in:

Journal of Biosciences, 2007, v. 32, n. 5, p. 1019, doi. 10.1007/s12038-007-0101-5

By:

RAY, SHUBHRA SANKAR;
BANDYOPADHYAY, SANGHAMITRA;
PAL, SANKAR K.

Publication type:

Article

An improved algorithm for clustering gene expression data.

Published in:

Bioinformatics, 2007, v. 23, n. 21, p. 2859

By:

Sanghamitra Bandyopadhyay;
Anirban Mukhopadhyay;
Ujjwal Maulik

Publication type:

Article

CODC: a Copula-based model to identify differential coexpression.

Published in:

NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-0137-9

By:

Ray, Sumanta;
Lall, Snehalika;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Anti-apoptotic role of omega-3-fatty acids in developing brain: perinatal hypothyroid rat cerebellum as apoptotic model

Published in:

International Journal of Developmental Neuroscience, 2009, v. 27, n. 4, p. 377, doi. 10.1016/j.ijdevneu.2009.02.003

By:

Sinha, Rohit A.;
Khare, Priyanka;
Rai, Asit;
Maurya, Shailendra Kumar;
Pathak, Amrita;
Mohan, Vishwa;
Nagar, Geet Kumar;
Mudiam, Mohana Krishna Reddy;
Godbole, Madan M.;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Role of Neuron and Glia in Alzheimer's Disease and Associated Vascular Dysfunction.

Published in:

Frontiers in Aging Neuroscience, 2021, v. 13, p. 1, doi. 10.3389/fnagi.2021.653334

By:

Bandyopadhyay, Sanghamitra

Publication type:

Article

JID 'Long run effects of Covid‐19 on developing countries' Special Issue Editorial Introduction.

Published in:

Journal of International Development, 2022, v. 34, n. 4, p. 695, doi. 10.1002/jid.3673

By:

Bandyopadhyay, Sanghamitra;
Vadlamannati, Krishna

Publication type:

Article

Explaining inter‐ethnic marriage in Sub‐Saharan Africa.

Published in:

Journal of International Development, 2021, v. 33, n. 4, p. 627, doi. 10.1002/jid.3535

By:

Bandyopadhyay, Sanghamitra;
Green, Elliott

Publication type:

Article

A copula based topology preserving graph convolution network for clustering of single-cell RNA-seq data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 3, p. 1, doi. 10.1371/journal.pcbi.1009600

By:

Lall, Snehalika;
Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Exploring the Genomic Roadmap and Molecular Phylogenetics Associated with MODY Cascades Using Computational Biology.

Published in:

Cell Biochemistry & Biophysics, 2015, v. 71, n. 3, p. 1491, doi. 10.1007/s12013-014-0372-z

By:

Chakraborty, Chiranjib;
Bandyopadhyay, Sanghamitra;
Doss, C.;
Agoramoorthy, Govindasamy

Publication type:

Article

Topology Mapping of Insulin-Regulated Glucose Transporter GLUT4 Using Computational Biology.

Published in:

Cell Biochemistry & Biophysics, 2013, v. 67, n. 3, p. 1261, doi. 10.1007/s12013-013-9644-2

By:

Chakraborty, Chiranjib;
Bandyopadhyay, Sanghamitra;
Maulik, Ujjwal;
Agoramoorthy, Govindasamy

Publication type:

Article

Mapping the Structural Topology of IRS Family Cascades Through Computational Biology.

Published in:

Cell Biochemistry & Biophysics, 2013, v. 67, n. 3, p. 1319, doi. 10.1007/s12013-013-9664-y

By:

Chakraborty, Chiranjib;
George Priya Doss, C.;
Bandyopadhyay, Sanghamitra;
Sarkar, Bimal Kumar;
Syed Haneef, S. A.

Publication type:

Article

Similarities in lindane induced alterations in protein expression profiling in different brain regions with neurodegenerative diseases.

Published in:

Proteomics, 2015, v. 15, n. 22, p. 3875, doi. 10.1002/pmic.201400407

By:

Mudawal, Anubha;
Singh, Anshuman;
Yadav, Sanjay;
Mishra, Manisha;
Singh, Pradhyumna Kumar;
Chandravanshi, Lalit Pratap;
Mishra, Juhi;
Khanna, Vinay K.;
Bandyopadhyay, Sanghamitra;
Parmar, Devendra

Publication type:

Article

LSH-GAN enables in-silico generation of cells for small sample high dimensional scRNA-seq data.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03473-y

By:

Lall, Snehalika;
Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells.

Published in:

Journal of Extracellular Vesicles, 2014, v. 3, p. 1, doi. 10.3402/jev.v3.23129

By:

Aqil, Madeeha;
Naqvi, Afsar Raza;
Mallik, Saurav;
Bandyopadhyay, Sanghamitra;
Maulik, Ujjwal;
Jameel, Shahid

Publication type:

Article

A scalable unsupervised learning of scRNAseq data detects rare cells through integration of structure-preserving embedding, clustering and outlier detection.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad125

By:

Mallick, Koushik;
Chakraborty, Sikim;
Mallik, Saurav;
Bandyopadhyay, Sanghamitra

Publication type:

Article

sc-REnF: An entropy guided robust feature selection for single-cell RNA-seq data.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab517

By:

Lall, Snehalika;
Ghosh, Abhik;
Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

A review of in silico approaches for analysis and prediction of HIV-1-human protein–protein interactions.

Published in:

Briefings in Bioinformatics, 2015, v. 16, n. 5, p. 830, doi. 10.1093/bib/bbu041

By:

Bandyopadhyay, Sanghamitra;
Ray, Sumanta;
Mukhopadhyay, Anirban;
Maulik, Ujjwal

Publication type:

Article

Development of the human cancer microRNA network.

Published in:

Silence, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1758-907X-1-6

By:

Bandyopadhyay, Sanghamitra;
Mitra, Ramkrishna;
Maulik, Ujjwal;
Zhang, Michael Q.

Publication type:

Article

Is there a relationship between inequality and terrorism? Evidence from a semi-parametric approach.

Published in:

Applied Economics Letters, 2022, v. 29, n. 9, p. 855, doi. 10.1080/13504851.2021.1925625

By:

Bandyopadhyay, Sanghamitra;
Ijaz, Abdullah

Publication type:

Article

Interleukin‐1α stimulates non‐amyloidogenic pathway by α‐secretase (ADAM‐10 and ADAM‐17) cleavage of APP in human astrocytic cells involving p38 MAP kinase.

Published in:

Journal of Neuroscience Research, 2006, v. 84, n. 1, p. 106

By:

Sanghamitra Bandyopadhyay;
Dean M. Hartley;
Catherine M. Cahill;
Debomay K. Lahiri;
Naibedya Chattopadhyay;
Jack T. Rogers

Publication type:

Article

Intergenerational Mobility and Inequality in China: Evidence from the Chinese Household Income Project.

Published in:

Review of Public Economics / Hacienda Pública Española, 2024, v. 248, n. 1, p. 73, doi. 10.7866/hpe-rpe.24.1.4

By:

ZEHUA JIANG;
BANDYOPADHYAY, SANGHAMITRA

Publication type:

Article

Detecting TF-miRNA-gene network based modules for 5hmC and 5mC brain samples: a intra- and inter-species case-study between human and rhesus.

Published in:

2018

By:

Maulik, Ujjwal;
Sen, Sagnik;
Mallik, Saurav;
Bandyopadhyay, Sanghamitra

Publication type:

Case Study

Reference distributions and inequality measurement.

Published in:

Journal of Economic Inequality, 2013, v. 11, n. 4, p. 421, doi. 10.1007/s10888-012-9238-z

By:

Cowell, Frank A.;
Flachaire, Emmanuel;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Variable Weighted Maximal Relevance Minimal Redundancy Criterion for Feature Selection Using Normalized Mutual Information.

Published in:

Journal of Multiple-Valued Logic & Soft Computing, 2015, v. 25, n. 2-3, p. 189

By:

BANDYOPADHYAY, SANGHAMITRA;
BHADRA, TAPAS;
MAULIK, UJJWAL

Publication type:

Article

RICH STATES, POOR STATES: CONVERGENCE AND POLARISATION IN INDIA.

Published in:

Scottish Journal of Political Economy, 2011, v. 58, n. 3, p. 414, doi. 10.1111/j.1467-9485.2011.00553.x

By:

Bandyopadhyay, Sanghamitra

Publication type:

Article

A new multiobjective clustering technique based on the concepts of stability and symmetry.

Published in:

Knowledge & Information Systems, 2010, v. 23, n. 1, p. 1, doi. 10.1007/s10115-009-0204-4

By:

Sriparna Saha;
Sanghamitra Bandyopadhyay

Publication type:

Article

Improved dropClust R package with integrative analysis support for scRNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 6, p. 1946, doi. 10.1093/bioinformatics/btz823

By:

Sinha, Debajyoti;
Sinha, Pradyumn;
Saha, Ritwik;
Bandyopadhyay, Sanghamitra;
Sengupta, Debarka

Publication type:

Article

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2625, doi. 10.1093/bioinformatics/btp503

By:

Bandyopadhyay, Sanghamitra;
Mitra, Ramkrishna

Publication type:

Article

The Reversal of Fortune Thesis Reconsidered.

Published in:

Journal of Development Studies, 2012, v. 48, n. 7, p. 817, doi. 10.1080/00220388.2011.648621

By:

Bandyopadhyay, Sanghamitra;
Green, Elliott

Publication type:

Article

SoURA: a user-reliability-aware social recommendation system based on graph neural network.

Published in:

Neural Computing & Applications, 2023, v. 35, n. 25, p. 18533, doi. 10.1007/s00521-023-08679-7

By:

Dawn, Sucheta;
Das, Monidipa;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Rosiglitazone up‐regulates glial fibrillary acidic protein via HB‐EGF secreted from astrocytes and neurons through PPARγ pathway and reduces apoptosis in high‐fat diet‐fed mice.

Published in:

Journal of Neurochemistry, 2019, v. 149, n. 5, p. 679, doi. 10.1111/jnc.14610

By:

Kushwaha, Rajesh;
Mishra, Juhi;
Gupta, Anand Prakash;
Gupta, Keerti;
Vishwakarma, Jitendra;
Chattopadhyay, Naibedya;
Gayen, Jiaur Rahaman;
Kamthan, Mohan;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Docosahexaenoic acid up-regulates both PI3K/ AKT-dependent FABP7- PPARγ interaction and MKP3 that enhance GFAP in developing rat brain astrocytes.

Published in:

Journal of Neurochemistry, 2017, v. 140, n. 1, p. 96, doi. 10.1111/jnc.13879

By:

Tripathi, Sachin;
Kushwaha, Rajesh;
Mishra, Juhi;
Gupta, Manoj Kumar;
Kumar, Harish;
Sanyal, Somali;
Singh, Dhirendra;
Sanyal, Sabyasachi;
Sahasrabuddhe, Amogh Anant;
Kamthan, Mohan;
Mudiam, Mohana Krishna Reddy;
Bandyopadhyay, Sanghamitra

Publication type:

Article

A NMF based approach for integrating multiple data sources to predict HIV-1–human PPIs.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0952-6

By:

Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

RgCop-A regularized copula based method for gene selection in single cell rna-seq data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009464

By:

Lall, Snehalika;
Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Urbanization and mortality decline.

Published in:

Journal of Regional Science, 2018, v. 58, n. 2, p. 483, doi. 10.1111/jors.12375

By:

Bandyopadhyay, Sanghamitra;
Green, Elliott

Publication type:

Article

Fuzzy clustering of physicochemical and biochemical properties of amino Acids.

Published in:

Amino Acids, 2012, v. 43, n. 2, p. 583, doi. 10.1007/s00726-011-1106-9

By:

Saha, Indrajit;
Maulik, Ujjwal;
Bandyopadhyay, Sanghamitra;
Plewczynski, Dariusz

Publication type:

Article

Arsenic Induces GSK3β-Dependent p-Tau, Neuronal Apoptosis, and Cognitive Impairment via an Interdependent Hippocampal ERα and IL-1/IL-1R1 Mechanism in Female Rats.

Published in:

Toxicological Sciences, 2022, v. 190, n. 1, p. 79, doi. 10.1093/toxsci/kfac087

By:

Gupta, Keerti;
Vishwakarma, Jitendra;
Garg, Asmita;
Pandey, Rukmani;
Jain, Veena;
Gupta, Raksha;
Das, Uttara;
Roy, Somendu;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Arsenic Attenuates Heparin-Binding EGF-Like Growth Factor/EGFR Signaling That Promotes Matrix Metalloprotease 9-Dependent Astrocyte Damage in the Developing Rat Brain.

Published in:

Toxicological Sciences, 2018, v. 162, n. 2, p. 406, doi. 10.1093/toxsci/kfx264

By:

Kushwaha, Rajesh;
Mishra, Juhi;
Tripathi, Sachin;
Raza, Waseem;
Mandrah, Kapil;
Roy, Somendu Kumar;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Arsenic Induces Hippocampal Neuronal Apoptosis and Cognitive Impairments via an Up-Regulated BMP2/Smad-Dependent Reduced BDNF/TrkB Signaling in Rats.

Published in:

Toxicological Sciences, 2017, v. 159, n. 1, p. 137, doi. 10.1093/toxsci/kfx124

By:

Pandey, Rukmani;
Rai, Vipin;
Mishra, Juhi;
Mandrah, Kapil;
Roy, Somendu Kumar;
Bandyopadhyay, Sanghamitra

Publication type:

Article