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Symmetrization in the Calculation Pipeline of Gauss Function-Based Modeling of Hydrophobicity in Protein Structures.
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- Symmetry (20738994), 2022, v. 14, n. 9, p. 1876, doi. 10.3390/sym14091876
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- Article
The Status of Edge Strands in Ferredoxin-Like Fold.
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- Symmetry (20738994), 2020, v. 12, n. 6, p. 1032, doi. 10.3390/sym12061032
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- Article
Alternative Hydrophobic Core in Proteins—The Effect of Specific Synergy.
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- Symmetry (20738994), 2020, v. 12, n. 2, p. 273, doi. 10.3390/sym12020273
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- Article
Symmetry and Dissymmetry in Protein Structure—System-Coding Its Biological Specificity.
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- Symmetry (20738994), 2019, v. 11, n. 10, p. 1215, doi. 10.3390/sym11101215
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- Article
Alternative Structures of α-Synuclein.
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- Molecules, 2020, v. 25, n. 3, p. 600, doi. 10.3390/molecules25030600
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- Article
The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins.
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- Molecules, 2019, v. 24, n. 23, p. 4395, doi. 10.3390/molecules24234395
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- Article
Internal force field in selected proteins.
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- Acta Biochimica Polonica, 2019, v. 66, n. 4, p. 451, doi. 10.18388/abp.2019_2865
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- Article
Structural analysis of the Aβ(15-40) amyloid fibril based on hydrophobicity distribution.
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- Acta Biochimica Polonica, 2018, v. 65, n. 4, p. 595, doi. 10.18388/abp.2018_2647
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- Article
Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.
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- Journal of Molecular Modeling, 2012, v. 18, n. 1, p. 229, doi. 10.1007/s00894-011-1033-4
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- Article
Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 5002, doi. 10.3390/ijms22095002
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- Article
Model of Environmental Membrane Field for Transmembrane Proteins.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 7, p. 3619, doi. 10.3390/ijms22073619
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- Article
Downhill, Ultrafast and Fast Folding Proteins Revised.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7632, doi. 10.3390/ijms21207632
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- Article
The Structure of Amyloid Versus the Structure of Globular Proteins.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 13, p. 4683, doi. 10.3390/ijms21134683
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- Article
Different Synergy in Amyloids and Biologically Active Forms of Proteins.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 18, p. 4436, doi. 10.3390/ijms20184436
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- Article
Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 10, p. 2910, doi. 10.3390/ijms19102910
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- Article
Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.
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- International Journal of Molecular Sciences, 2016, v. 17, n. 10, p. 1741, doi. 10.3390/ijms17101741
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- Article
Intermediates in the Protein Folding Process: A Computational Model.
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- International Journal of Molecular Sciences, 2011, v. 12, n. 8, p. 4850, doi. 10.3390/ijms11084850
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- Article
Chaperonin Structure -- The Large Multi-Subunit Protein Complex.
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- International Journal of Molecular Sciences, 2009, v. 10, n. 3, p. 844, doi. 10.3390/ijms10030844
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- Article
Structural analysis of the Aβ(11–42) amyloid fibril based on hydrophobicity distribution.
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- Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 7, p. 665, doi. 10.1007/s10822-019-00209-9
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- Article
Assessment of Globularity of Protein Structures via Minimum Volume Ellipsoids and Voxel-Based Atom Representation.
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- Crystals (2073-4352), 2021, v. 11, n. 12, p. 1539, doi. 10.3390/cryst11121539
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- Article
Contribution to the Understanding of Protein–Protein Interface and Ligand Binding Site Based on Hydrophobicity Distribution—Application to Ferredoxin I and II Cases.
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- Applied Sciences (2076-3417), 2021, v. 11, n. 18, p. 8514, doi. 10.3390/app11188514
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- Article
Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model.
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- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 3, p. N.PAG, doi. 10.1515/bams-2018-0028
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- Article
Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG).
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- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 2, p. N.PAG, doi. 10.1515/bams-2018-0008
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- Article
Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure.
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- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 4, p. 179, doi. 10.1515/bams-2017-0024
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- Article
Mechanism of ligand binding - PDZ domain taken as example.
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- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 4, p. 175, doi. 10.1515/bams-2017-0022
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- Article
Role of the hydrophobic core in cytoskeleton protein: cardiac myosin binding protein C.
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- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 3, p. 161, doi. 10.1515/bams-2017-0018
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- Article
The variability of protein structure with respect to the hydrophobic core.
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- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 2, p. 63, doi. 10.1515/bams-2017-0004
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- Article
Structure of hydrophobic core in plant carboxylesterase.
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- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 1, p. 13, doi. 10.1515/bams-2017-0001
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- Article
Dissimilar sequence: similar structure of proteins.
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- Bio-Algorithms & Med-Systems, 2016, v. 12, n. 3, p. 117, doi. 10.1515/bams-2016-0014
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- Article
Hydrophobic core structure of macromomycin - the apoprotein of the antitumor antibiotic auromomycin - fuzzy oil drop model applied.
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- Bio-Algorithms & Med-Systems, 2015, v. 11, n. 3, p. 177, doi. 10.1515/bams-2015-0014
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- Article
Application of divergence entropy to characterize the structure of lipid-binding proteins.
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- Bio-Algorithms & Med-Systems, 2015, v. 11, n. 3, p. 171, doi. 10.1515/bams-2015-0017
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- Article
Structural role of exons in hemoglobin.
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- Bio-Algorithms & Med-Systems, 2013, v. 9, n. 2, p. 81, doi. 10.1515/bams-2013-0009
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- Article
Structural role of exon-coded fragments in proteins.
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- Bio-Algorithms & Med-Systems, 2013, v. 9, n. 3, p. 103, doi. 10.1515/bams-2013-0020
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- Article
Improved Assessment of Globularity of Protein Structures and the Ellipsoid Profile of the Biological Assemblies from the PDB.
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- Biomolecules (2218-273X), 2023, v. 13, n. 2, p. 385, doi. 10.3390/biom13020385
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Structure and Location of Protein Sites Binding Self-Associated Congo Red Molecules with Intercalated Drugs as Compact Ligands—Theoretical Studies.
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- Biomolecules (2218-273X), 2021, v. 11, n. 4, p. 501, doi. 10.3390/biom11040501
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- Article
Structure of the Hydrophobic Core Determines the 3D Protein Structure—Verification by Single Mutation Proteins.
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- Biomolecules (2218-273X), 2020, v. 10, n. 5, p. 767, doi. 10.3390/biom10050767
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- Article
Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin.
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- Entropy, 2021, v. 23, n. 4, p. 458, doi. 10.3390/e23040458
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- Article
Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle.
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- Entropy, 2017, v. 19, n. 4, p. 167, doi. 10.3390/e19040167
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- Article
Influence of the Aqueous Environment on Protein Structure—A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis.
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- Entropy, 2016, v. 18, n. 10, p. 351, doi. 10.3390/e18100351
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- Article
Role of Disulfide Bonds in Stabilizing the Conformation of Selected Enzymes--An Approach Based on Divergence Entropy Applied to the Structure of Hydrophobic Core in Proteins.
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- Entropy, 2016, v. 18, n. 3, p. 67, doi. 10.3390/e18030067
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- Article
Application of Divergence Entropy to Characterize the Structure of the Hydrophobic Core in DNA Interacting Proteins.
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- Entropy, 2015, v. 17, n. 3, p. 1477, doi. 10.3390/e17031477
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- Article
Structural Outlier Detection and Zernike–Canterakis Moments for Molecular Surface Meshes—Fast Implementation in Python.
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- Molecules, 2024, v. 29, n. 1, p. 52, doi. 10.3390/molecules29010052
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- Article
Aggregation-promoting conditions necessary to create the complexes by acylphosphatase from the hyperthermophile Sulfolobus solfataricus.
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- Bio-Algorithms & Med-Systems, 2019, v. 15, n. 2, p. N.PAG, doi. 10.1515/bams-2019-0023
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- Article
Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments.
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- Pharmaceuticals (14248247), 2017, v. 10, n. 4, p. 89, doi. 10.3390/ph10040089
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- Article
Contribution to the Prediction of the Fold Code: Application to Immunoglobulin and Flavodoxin Cases.
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- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0125098
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- Article
Is the hydrophobic core a universal structural element in proteins?
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- Journal of Molecular Modeling, 2017, v. 23, n. 7, p. 1, doi. 10.1007/s00894-017-3367-z
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- Article