Works by Ballinger, Tracy

Results: 10

Divergent trajectories to structural diversity impact patient survival in high grade serous ovarian cancer.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60655-y

By:

Ewing, Ailith;
Meynert, Alison;
Silk, Ryan;
Aitken, Stuart;
Bendixsen, Devin P.;
Churchman, Michael;
Brown, Stuart L.;
Hamdan, Alhafidz;
Mattocks, Joanne;
Grimes, Graeme R.;
Ballinger, Tracy;
Hollis, Robert L.;
Simon Herrington, C.;
Thomson, John P.;
Sherwood, Kitty;
Parry, Thomas;
Esiri-Bloom, Edward;
Bartos, Clare;
Croy, Ian;
Ferguson, Michelle

Publication type:

Article

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks.

Published in:

Nature, 2008, v. 456, n. 7218, p. 125, doi. 10.1038/nature07324

By:

Zilberman, Daniel;
Coleman-Derr, Devin;
Ballinger, Tracy;
Henikoff, Steven

Publication type:

Article

Modeling double strand break susceptibility to interrogate structural variation in cancer.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1635-1

By:

Ballinger, Tracy J.;
Bouwman, Britta A. M.;
Mirzazadeh, Reza;
Garnerone, Silvano;
Crosetto, Nicola;
Semple, Colin A.

Publication type:

Article

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

Published in:

Nature Genetics, 2007, v. 39, n. 1, p. 61, doi. 10.1038/ng1929

By:

Zilberman, Daniel;
Gehring, Mary;
Tran, Robert K.;
Ballinger, Tracy;
Henikoff, Steven

Publication type:

Article

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1258-4

By:

Zerbino, Daniel R.;
Ballinger, Tracy;
Paten2, Benedict;
Hickey, Glenn;
Haussler, David

Publication type:

Article

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair.

Published in:

PLoS Biology, 2018, v. 16, n. 12, p. 1, doi. 10.1371/journal.pbio.2005595

By:

Kallimasioti-Pazi, Eirini M.;
Thelakkad Chathoth, Keerthi;
Taylor, Gillian C.;
Meynert, Alison;
Ballinger, Tracy;
Kelder, Martijn J. E.;
Lalevée, Sébastien;
Sanli, Ildem;
Feil, Robert;
Wood, Andrew J.

Publication type:

Article

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes.

Published in:

Genome Biology, 2013, v. 14, n. 3, p. 1, doi. 10.1186/gb-2013-14-3-r22

By:

Ewing, Adam D.;
Ballinger, Tracy J.;
Earl, Dent;
Harris, Christopher C.;
Wilson, Richard K.;
Haussler, David

Publication type:

Article

DNA demethylation by the base-excision DNA repair pathway in Arabidopsis.

Published in:

FASEB Journal, 2007, v. 21, n. 5, p. A206, doi. 10.1096/fasebj.21.5.a206

By:

Fischer, Robert;
Jin-Hoe Huh;
Penterman, Jon;
Gehring, Mary;
Zilberman, Daniel;
Ballinger, Tracy;
Henikoff, Steve

Publication type:

Article

Conserved role of intragenic DNA methylation in regulating alternative promoters.

Published in:

Nature, 2010, v. 466, n. 7303, p. 253, doi. 10.1038/nature09165

By:

Maunakea, Alika K.;
Nagarajan, Raman P.;
Bilenky, Mikhail;
Ballinger, Tracy J.;
D’Souza, Cletus;
Fouse, Shaun D.;
Johnson, Brett E.;
Hong, Chibo;
Nielsen, Cydney;
Zhao, Yongjun;
Turecki, Gustavo;
Delaney, Allen;
Varhol, Richard;
Thiessen, Nina;
Shchors, Ksenya;
Heine, Vivi M.;
Rowitch, David H.;
Xiaoyun Xing;
Fiore, Chris;
Schillebeeckx, Maximiliaan

Publication type:

Article

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Published in:

Nature Biotechnology, 2010, v. 28, n. 10, p. 1097, doi. 10.1038/nbt.1682

By:

Harris, R. Alan;
Ting Wang;
Coarfa, Cristian;
Nagarajan, Raman P.;
Hong, Chibo;
Downey, Sara L.;
Johnson, Brett E.;
Fouse, Shaun D.;
Delaney, Allen;
Yongjun Zhao;
Olshen, Adam;
Ballinger, Tracy;
Xin Zhou;
Forsberg, Kevin J.;
Junchen Gu;
Echipare, Lorigail;
O'Geen, Henriette;
Lister, Ryan;
Pelizzola, Mattia;
Yuanxin Xi

Publication type:

Article