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Common cell type nomenclature for the mammalian brain.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.59928
By:
- Miller, Jeremy A.;
- Gouwens, Nathan W.;
- Tasic, Bosiljka;
- Collman, Forrest;
- van Velthoven, Cindy T. J.;
- Bakken, Trygve E.;
- Hawrylycz, Michael J.;
- Hongkui Zeng;
- Lein, Ed S.;
- Bernard, Amy
Publication type:
Article
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.
Published in:
eLife, 2019, p. 1, doi. 10.7554/eLife.47889
By:
- Smith, Stephen J.;
- Sümbül, Uygar;
- Graybuck, Lucas T.;
- Collman, Forrest;
- Seshamani, Sharmishtaa;
- Gala, Rohan;
- Gliko, Olga;
- Elabbady, Leila;
- Miller, Jeremy A.;
- Bakken, Trygve E.;
- Rossier, Jean;
- Zizhen Yao;
- Lein, Ed;
- Hongkui Zeng;
- Tasic, Bosiljka;
- Hawrylycz, Michael
Publication type:
Article
An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46070-9
By:
- Liu, Shixuan;
- Ezran, Camille;
- Wang, Michael F. Z.;
- Li, Zhengda;
- Awayan, Kyle;
- The Tabula Microcebus Consortium;
- Agarwal, Snigdha;
- Agrawal, Aditi;
- Al-Moujahed, Ahmad;
- Alam, Alina;
- Albertelli, Megan A.;
- Allegakoen, Paul;
- Ambrosi, Thomas;
- Antony, Jane;
- Artandi, Steven;
- Aujard, Fabienne;
- Baghel, Ankit;
- Bakerman, Isaac;
- Bakken, Trygve. E.;
- Baruni, Jalal
Publication type:
Article
Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.64875
By:
- Bakken, Trygve E.;
- van Velthoven, Cindy T. J.;
- Meno, Vilas;
- Hodge, Rebecca D.;
- Zizhen Yao;
- Thuc Nghi Nguyen;
- Graybuck, Lucas T.;
- Horwitz, Gregory D.;
- Bertagnolli, Darren;
- Goldy, Jeff;
- Yanny, Anna Marie;
- Garren, Emma;
- Parry, Sheana;
- Casper, Tamara;
- Shehata, Soraya I.;
- Barkan, Eliza R.;
- Szafer, Aaron;
- Levi, Boaz P.;
- Dee, Nick;
- Smith, Kimberly A.
Publication type:
Article
Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas.
Published in:
PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0212898
By:
- Weed, Natalie;
- Bakken, Trygve;
- Graddis, Nile;
- Gouwens, Nathan;
- Millman, Daniel;
- Hawrylycz, Michael;
- Waters, Jack
Publication type:
Article
FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa339
By:
- Zhang, Yun;
- Aevermann, Brian D;
- Bakken, Trygve E;
- Miller, Jeremy A;
- Hodge, Rebecca D;
- Lein, Ed S;
- Scheuermann, Richard H
Publication type:
Article
Multiple Alu Exonization in 3′UTR of a Primate-Specific Isoform of CYP20A1 Creates a Potential miRNA Sponge.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 1, p. 1, doi. 10.1093/gbe/evaa233
By:
- Bhattacharya, Aniket;
- Jha, Vineet;
- Singhal, Khushboo;
- Fatima, Mahar;
- Singh, Dayanidhi;
- Chaturvedi, Gaura;
- Dholakia, Dhwani;
- Kutum, Rintu;
- Pandey, Rajesh;
- Bakken, Trygve E;
- Seth, Pankaj;
- Pillai, Beena;
- Mukerji, Mitali
Publication type:
Article
Visual system scaling in teleost fish.
Published in:
Journal of Comparative Neurology, 2012, v. 520, n. 1, p. 142, doi. 10.1002/cne.22704
By:
- Bakken, Trygve E.;
- Stevens, Charles F.
Publication type:
Article
A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases.
Published in:
PLoS Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1371/journal.pbio.3002058
By:
- Zeighami, Yashar;
- Bakken, Trygve E.;
- Nickl-Jockschat, Thomas;
- Peterson, Zeru;
- Jegga, Anil G.;
- Miller, Jeremy A.;
- Schulkin, Jay;
- Evans, Alan C.;
- Lein, Ed S.;
- Hawrylycz, Michael
Publication type:
Article
Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.81863
By:
- Kim, Mean-Hwan;
- Radaelli, Cristina;
- Thomsen, Elliot R.;
- Monet, Deja;
- Chartrand, Thomas;
- Jorstad, Nikolas L.;
- Mahoney, Joseph T.;
- Taormina, Michael J.;
- Long, Brian;
- Baker, Katherine;
- Bakken, Trygve E.;
- Campagnola, Luke;
- Casper, Tamara;
- Clark, Michael;
- Dee, Nick;
- D'Orazi, Florence;
- Gamlin, Clare;
- Kalmbach, Brian E.;
- Kebede, Sara;
- Lee, Brian R.
Publication type:
Article
Spatiotemporal dynamics of the postnatal developing primate brain transcriptome.
Published in:
Human Molecular Genetics, 2015, v. 24, n. 15, p. 4327, doi. 10.1093/hmg/ddv166
By:
- Bakken, Trygve E.;
- Miller, Jeremy A.;
- Luo, Rui;
- Bernard, Amy;
- Bennett, Jeffrey L.;
- Chang-Kyu Lee;
- Bertagnolli, Darren;
- Parikshak, Neelroop N.;
- Smith, Kimberly A.;
- Sunkin, Susan M.;
- Amaral, David G.;
- Geschwind, Daniel H.;
- Lein, Ed S.
Publication type:
Article
New insights into the development of the human cerebral cortex.
Published in:
Journal of Anatomy, 2019, v. 235, n. 3, p. 432, doi. 10.1111/joa.13055
By:
- Molnár, Zoltán;
- Clowry, Gavin J.;
- Šestan, Nenad;
- Alzu'bi, Ayman;
- Bakken, Trygve;
- Hevner, Robert F.;
- Hüppi, Petra S.;
- Kostović, Ivica;
- Rakic, Pasko;
- Anton, E. S.;
- Edwards, David;
- Garcez, Patricia;
- Hoerder‐Suabedissen, Anna;
- Kriegstein, Arnold
Publication type:
Article
Cell type discovery and representation in the era of high-content single cell phenotyping.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1977-1
By:
- Bakken, Trygve;
- Cowell, Lindsay;
- Aevermann, Brian D.;
- Novotny, Mark;
- Hodge, Rebecca;
- Miller, Jeremy A.;
- Lee, Alexandra;
- Ivan Chang;
- McCorrison, Jamison;
- Pulendran, Bali;
- Yu Qian;
- Schork, Nicholas J.;
- Lasken, Roger S.;
- Lein, Ed S.;
- Scheuermann, Richard H.
Publication type:
Article
Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.
Published in:
PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209648
By:
- Bakken, Trygve E.;
- Hodge, Rebecca D.;
- Miller, Jeremy A.;
- Yao, Zizhen;
- Nguyen, Thuc Nghi;
- Aevermann, Brian;
- Barkan, Eliza;
- Bertagnolli, Darren;
- Casper, Tamara;
- Dee, Nick;
- Garren, Emma;
- Goldy, Jeff;
- Graybuck, Lucas T.;
- Kroll, Matthew;
- Lasken, Roger S.;
- Lathia, Kanan;
- Parry, Sheana;
- Rimorin, Christine;
- Scheuermann, Richard H.;
- Schork, Nicholas J.
Publication type:
Article
A Geographic Cline of Skull and Brain Morphology among Individuals of European Ancestry.
Published in:
Human Heredity, 2011, v. 72, n. 1, p. 35, doi. 10.1159/000330168
By:
- Bakken, Trygve E.;
- Dale, Anders M.;
- Schork, Nicholas J.
Publication type:
Article
Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14952-3
By:
- Hodge, Rebecca D.;
- Miller, Jeremy A.;
- Novotny, Mark;
- Kalmbach, Brian E.;
- Ting, Jonathan T.;
- Bakken, Trygve E.;
- Aevermann, Brian D.;
- Barkan, Eliza R.;
- Berkowitz-Cerasano, Madeline L.;
- Cobbs, Charles;
- Diez-Fuertes, Francisco;
- Ding, Song-Lin;
- McCorrison, Jamison;
- Schork, Nicholas J.;
- Shehata, Soraya I.;
- Smith, Kimberly A.;
- Sunkin, Susan M.;
- Tran, Danny N.;
- Venepally, Pratap;
- Yanny, Anna Marie
Publication type:
Article

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