Works matching AU Baisakh, Niranjan

Results: 54

Devising Genomic Selection Strategies for Louisiana Sugar Cane Variety Development Program.

Published in:

Journal of the American Society of Sugar Cane Technologists, 2024, v. 44, p. 39

By:

Baisakh, Niranjan;
Shahi, Dipendra;
Todd, James;
Hale, Anna;
Gravois, Kenneth

Publication type:

Article

Differential Expression of the Transcripts of Spartina alterniflora Loisel (Smooth Cordgrass) Induced in Response to Petroleum Hydrocarbon.

Published in:

Molecular Biotechnology, 2012, v. 51, n. 1, p. 18, doi. 10.1007/s12033-011-9436-0

By:

RamanaRao, Mangu;
Weindorf, David;
Breitenbeck, Gary;
Baisakh, Niranjan

Publication type:

Article

The 21st Century Agriculture: When Rice Research Draws Attention to Climate Variability and How Weedy Rice and Underutilized Grains Come in Handy.

Published in:

Plants (2223-7747), 2020, v. 9, n. 3, p. 365, doi. 10.3390/plants9030365

By:

Mohd Hanafiah, Noraikim;
Mispan, Muhamad Shakirin;
Lim, Phaik Eem;
Baisakh, Niranjan;
Cheng, Acga

Publication type:

Article

Novel PCR-Based Multiplex Assays for Detecting Major Quality and Biotic Stress in Commercial and Weedy Rice.

Published in:

Life (2075-1729), 2022, v. 12, n. 10, p. 1542, doi. 10.3390/life12101542

By:

Mohd Hanafiah, Noraikim;
Cheng, Acga;
Lim, Phaik-Eem;
Sethuraman, Gomathy;
Mohd Zain, Nurul Amalina;
Baisakh, Niranjan;
Mispan, Muhamad Shakirin

Publication type:

Article

Whole-Genome Sequencing of KMR3 and Oryza rufipogon -Derived Introgression Line IL50-13 (Chinsurah Nona 2/Gosaba 6) Identifies Candidate Genes for High Yield and Salinity Tolerance in Rice.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.810373

By:

Thummala, Shashi Rekha;
Guttikonda, Haritha;
Tiwari, Shrish;
Ramanan, Rajeshwari;
Baisakh, Niranjan;
Neelamraju, Sarla;
Mangrauthia, Satendra K.

Publication type:

Article

The screening of rice germplasm, including those transgenic rice lines which accumulateβ-carotene in their polished seeds, for their carotenoid profile.

Published in:

International Journal of Food Science & Technology, 2005, v. 40, n. 5, p. 563, doi. 10.1111/j.1365-2621.2005.00971.x

By:

Jing Tan;
Baisakh, Niranjan;
Oliva, Norman;
Parkhi, Vilas;
Rai, Mayank;
Torrizo, Lina;
Datta, Karabi;
Datta, Swapan K.

Publication type:

Article

Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 20, p. 4907, doi. 10.1093/jxb/ery244

By:

Zahraeifard, Sara;
Foroozani, Maryam;
Sepehri, Aliasghar;
Oh, Dong-Ha;
Wang, Guannan;
Mangu, Venkata;
Chen, Bin;
Baisakh, Niranjan;
Dassanayake, Maheshi;
Smith, Aaron P

Publication type:

Article

Identification of QTLs for Resistance to Fusarium Head Blight Using a Doubled Haploid Population Derived from Southeastern United States Soft Red Winter Wheat Varieties AGS 2060 and AGS 2035.

Published in:

Genes, 2020, v. 11, n. 6, p. 699, doi. 10.3390/genes11060699

By:

Castro Aviles, Alejandro;
Alan Harrison, Stephen;
Joseph Arceneaux, Kelly;
Brown-Guidera, Gina;
Esten Mason, Richard;
Baisakh, Niranjan

Publication type:

Article

Genetic Mapping Identifies Consistent Quantitative Trait Loci for Yield Traits of Rice under Greenhouse Drought Conditions.

Published in:

Genes, 2020, v. 11, n. 1, p. 62, doi. 10.3390/genes11010062

By:

Baisakh, Niranjan;
Yabes, Jonalyn;
Gutierrez, Andres;
Mangu, Venkata;
Ma, Peiyong;
Famoso, Adam;
Pereira, Andy

Publication type:

Article

Characterization of Haplotype Diversity in the BADH2 Aroma Gene and Development of a KASP SNP Assay for Predicting Aroma in U.S. Rice.

Published in:

Rice (19398425), 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12284-020-00410-7

By:

Addison, Christopher K.;
Angira, Brijesh;
Kongchum, Manoch;
Harrell, Dustin L.;
Baisakh, Niranjan;
Linscombe, Steven D.;
Famoso, Adam N.

Publication type:

Article

Correction: Genome-wide microarray analysis leads to identification of genes in response to herbicide, metribuzin in wheat leaves.

Published in:

2018

By:

Pilcher, Whitney;
Zandkarimi, Hana;
Arceneaux, Kelly;
Harrison, Stephen;
Baisakh, Niranjan

Publication type:

Correction Notice

An actin‐depolymerizing factor from the halophyte smooth cordgrass, Spartina alterniflora (SaADF2), is superior to its rice homolog (OsADF2) in conferring drought and salt tolerance when constitutively overexpressed in rice.

Published in:

Plant Biotechnology Journal, 2019, v. 17, n. 1, p. 188, doi. 10.1111/pbi.12957

By:

Sengupta, Sonali;
Mangu, Venkata;
Sanchez, Luis;
Bedre, Renesh;
Joshi, Rohit;
Rajasekaran, Kanniah;
Baisakh, Niranjan

Publication type:

Article

Overexpression of Arabidopsis and Rice stress genes' inducible transcription factor confers drought and salinity tolerance to rice.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 5, p. 579, doi. 10.1111/j.1467-7652.2012.00688.x

By:

Datta, Karabi;
Baisakh, Niranjan;
Ganguly, Moumita;
Krishnan, Sellapan;
Yamaguchi Shinozaki, Kazuko;
Datta, Swapan K.

Publication type:

Article

Enhanced salt stress tolerance of rice plants expressing a vacuolar H<sup>+</sup>-ATPase subunit c1 ( SaVHAc1) gene from the halophyte grass Spartina alterniflora Löisel.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 4, p. 453, doi. 10.1111/j.1467-7652.2012.00678.x

By:

Baisakh, Niranjan;
RamanaRao, Mangu V.;
Rajasekaran, Kanniah;
Subudhi, Prasanta;
Janda, Jaroslav;
Galbraith, David;
Vanier, Cheryl;
Pereira, Andy

Publication type:

Article

Analyzing the Expression Profile of AREB/ABF and DREB/CBF Genes under Drought and Salinity Stresses in Grape (Vitis vinifera L.).

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134288

By:

Zandkarimi, Hana;
Ebadi, Ali;
Salami, Seyed Alireza;
Alizade, Houshang;
Baisakh, Niranjan

Publication type:

Article

Ectopic expression of ADP ribosylation factor 1 ( SaARF1) from smooth cordgrass ( Spartina alterniflora Loisel) confers drought and salt tolerance in transgenic rice and Arabidopsis.

Published in:

Plant Cell, Tissue & Organ Culture, 2014, v. 117, n. 1, p. 17, doi. 10.1007/s11240-013-0416-x

By:

Joshi, Rohit;
Ramanarao, Mangu;
Lee, Seokhyun;
Kato, Naohiro;
Baisakh, Niranjan

Publication type:

Article

Spartina alterniflora Loisel., a halophyte grass model to dissect salt stress tolerance.

Published in:

In Vitro Cellular & Developmental Biology Plant, 2011, v. 47, n. 4, p. 441, doi. 10.1007/s11627-011-9361-8

By:

Subudhi, Prasanta;
Baisakh, Niranjan

Publication type:

Article

MicroRNA (miRNA) profiling of maize genotypes with differential response to Aspergillus flavus implies zma-miR156–squamosa promoter binding protein (SBP) and zma-miR398/zma-miR394–F -box combinations involved in resistance mechanisms.

Published in:

Stress Biology, 2024, v. 4, n. 1, p. 1, doi. 10.1007/s44154-024-00158-w

By:

Gandham, Prasad;
Rajasekaran, Kanniah;
Sickler, Christine;
Mohan, Harikrishnan;
Gilbert, Matthew;
Baisakh, Niranjan

Publication type:

Article

Structure, organization and evolution of ADP-ribosylation factors in rice and foxtail millet, and their expression in rice.

Published in:

Scientific Reports, 2016, p. 24008, doi. 10.1038/srep24008

By:

Muthamilarasan, Mehanathan;
Mangu, Venkata R.;
Zandkarimi, Hana;
Prasad, Manoj;
Baisakh, Niranjan

Publication type:

Article

Identification of Genomic Regions Controlling Leaf Scald Resistance in Sugarcane Using a Bi-parental Mapping Population and Selective Genotyping by Sequencing.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.00877

By:

Gutierrez, Andres F.;
Hoy, Jeffrey W.;
Kimbeng, Collins A.;
Baisakh, Niranjan

Publication type:

Article

Sugarcane Cell Wall-Associated Defense Responses to Infection by Sporisorium scitamineum.

Published in:

Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00698

By:

Marques, João P. R.;
Hoy, Jeffrey W.;
Appezzato-da-Glória, Beatriz;
Viveros, Andrés F. G.;
Vieira, Maria L. C.;
Baisakh, Niranjan

Publication type:

Article

GROWTH COMPARISONS AND GENETIC DIVERSITY OF BERMUDAGRASS (CYNODON DACTYLON) BIOTYPES IN LOUISIANA.

Published in:

Journal of the American Society of Sugar Cane Technologists, 2015, v. 35, p. 1

By:

Fontenot, Dexter P.;
Griffin, James L.;
Baisakh, Niranjan

Publication type:

Article

Genome-wide microarray analysis leads to identification of genes in response to herbicide, metribuzin in wheat leaves.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189639

By:

Pilcher, Whitney;
Zandkamiri, Hana;
Arceneaux, Kelly;
Harrison, Stephen;
Baisakh, Niranjan

Publication type:

Article

Correction: Population Genetic Structure of Apple Scab (Venturia inaequalis (Cooke) G. Winter) in Iran.

Published in:

2016

By:

Ebrahimi, Leila;
Fotouhifar, Khalil-Berdi;
Javan Nikkhah, Mohammad;
Naghavi, Mohammad-Reza;
Baisakh, Niranjan

Publication type:

Correction Notice

Selection of genetically diverse sea oats lines with improved performance for coastal restoration in the northern Gulf of Mexico.

Published in:

Euphytica, 2012, v. 185, n. 1, p. 103, doi. 10.1007/s10681-012-0635-y

By:

Bertrand-Garcia, Sarah;
Knott, Carrie;
Baisakh, Niranjan;
Subudhi, Prasanta;
Harrison, Stephen;
Materne, Michael;
Utomo, Herry

Publication type:

Article

Golden rice: introgression, breeding, and field evaluation.

Published in:

Euphytica, 2007, v. 154, n. 3, p. 271, doi. 10.1007/s10681-006-9311-4

By:

Datta, Swapan K.;
Datta, Karabi;
Parkhi, Vilas;
Rai, Mayank;
Baisakh, Niranjan;
Sahoo, Gayatri;
Rehana, Sayeda;
Bandyopadhyay, Anindya;
Alamgir, Md.;
Ali, Md. S.;
Abrigo, Editha;
Oliva, Norman;
Torrizo, Lina

Publication type:

Article

An enriched sugarcane diversity panel for utilization in genetic improvement of sugarcane.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-70292-8

By:

Fickett, Nathanael D.;
Ebrahimi, Leila;
Parco, Arnold P.;
Gutierrez, Andres V.;
Hale, Anna L.;
Pontif, Michael J.;
Todd, James;
Kimbeng, Collins A.;
Hoy, Jeffrey W.;
Ayala-Silva, Tomas;
Gravois, Kenneth A.;
Baisakh, Niranjan

Publication type:

Article

Characterization of a Stress-Enhanced Promoter from the Grass Halophyte, Spartina alterniflora L.

Published in:

Biology (2079-7737), 2022, v. 11, n. 12, p. 1828, doi. 10.3390/biology11121828

By:

Sengupta, Sonali;
Pehlivan, Necla;
Mangu, Venkata;
Rajasekaran, Kanniah;
Baisakh, Niranjan

Publication type:

Article

A Reappraisal of Polyploidy Events in Grasses (Poaceae) in a Rapidly Changing World.

Published in:

Biology (2079-7737), 2022, v. 11, n. 5, p. 636, doi. 10.3390/biology11050636

By:

Cheng, Acga;
Mohd Hanafiah, Noraikim;
Harikrishna, Jennifer Ann;
Eem, Lim Phaik;
Baisakh, Niranjan;
Mispan, Muhamad Shakirin

Publication type:

Article

Distribution and frequency of Bru1, a major brown rust resistance gene, in the sugarcane world collection.

Published in:

Plant Breeding, 2017, v. 136, n. 5, p. 637, doi. 10.1111/pbr.12508

By:

Parco, Arnold S.;
Hale, Anna L.;
Avellaneda, Mavir C.;
Hoy, Jeffrey W.;
Kimbeng, Collins A.;
Pontif, Michael J.;
McCord, Per H.;
Ayala ‐ Silva, Tomas;
Todd, James R.;
Baisakh, Niranjan;
Jenkins, J.

Publication type:

Article

Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3017-3

By:

Bedre, Renesh;
Mangu, Venkata Ramanarao;
Srivastava, Subodh;
Sanchez, Luis Eduardo;
Baisakh, Niranjan

Publication type:

Article

Identification of Differential-Expressed Genes in Banana-Biostimulant Interaction Using Suppression Subtractive Hybridization.

Published in:

Agronomy, 2023, v. 13, n. 2, p. 415, doi. 10.3390/agronomy13020415

By:

Chavez-Navarrete, Tatiana;
Sanchez-Timm, Luis;
Pacheco-Coello, Ricardo;
Baisakh, Niranjan;
Santos-Ordóñez, Efrén

Publication type:

Article

Toward Food Security in 2050: Gene Pyramiding for Climate-Smart Rice.

Published in:

Sustainability (2071-1050), 2023, v. 15, n. 19, p. 14253, doi. 10.3390/su151914253

By:

Isnaini, Isnaini;
Nugraha, Yudhistira;
Baisakh, Niranjan;
Carsono, Nono

Publication type:

Article

Sequencing and expression analysis of salt-responsive miRNAs and target genes in the halophyte smooth cordgrass ( Spartina alternifolia Loisel).

Published in:

Molecular Biology Reports, 2015, v. 42, n. 8, p. 1341, doi. 10.1007/s11033-015-3880-z

By:

Zandkarimi, Hana;
Bedre, Renesh;
Solis, Julio;
Mangu, Venkata;
Baisakh, Niranjan

Publication type:

Article

Primary responses to salt stress in a halophyte, smooth cordgrass ( Spartina alterniflora Loisel.).

Published in:

Functional & Integrative Genomics, 2008, v. 8, n. 3, p. 287, doi. 10.1007/s10142-008-0075-x

By:

Baisakh, Niranjan;
Subudhi, Prasanta K.;
Varadwaj, Pritish

Publication type:

Article

Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.

Published in:

Nature Communications, 2014, v. 5, n. 10, p. 5302, doi. 10.1038/ncomms6302

By:

Ambavaram, Madana M. R.;
Basu, Supratim;
Krishnan, Arjun;
Ramegowda, Venkategowda;
Batlang, Utlwang;
Rahman, Lutfor;
Baisakh, Niranjan;
Pereira, Andy

Publication type:

Article

Population Genetic Structure of Apple Scab (Venturia inaequalis (Cooke) G. Winter) in Iran.

Published in:

PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0160737

By:

Ebrahimi, Leila;
Fotuhifar, Khalil-Berdi;
Javan Nikkhah, Mohammad;
Naghavi, Mohammad-Reza;
Baisakh, Niranjan

Publication type:

Article

Transcriptome Profiling of Beach Morning Glory (Ipomoea imperati) under Salinity and Its Comparative Analysis with Sweetpotato.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0147398

By:

Solis, Julio;
Baisakh, Niranjan;
Brandt, Steven R.;
Villordon, Arthur;
La Bonte, Don

Publication type:

Article

Genome-Wide Transcriptome Analysis of Cotton (Gossypium hirsutum L.) Identifies Candidate Gene Signatures in Response to Aflatoxin Producing Fungus Aspergillus flavus.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0138025

By:

Bedre, Renesh;
Rajasekaran, Kanniah;
Mangu, Venkata Ramanarao;
Sanchez Timm, Luis Eduardo;
Bhatnagar, Deepak;
Baisakh, Niranjan

Publication type:

Article

Frequency and distribution of the brown rust resistance gene Bru1 and implications for the Louisiana sugarcane breeding programme.

Published in:

Plant Breeding, 2014, v. 133, n. 5, p. 654, doi. 10.1111/pbr.12186

By:

Parco, Arnold S.;
Avellaneda, Mavir C.;
Hale, Anna H.;
Hoy, Jeffrey W.;
Kimbeng, Collins A.;
Pontif, Michael J.;
Gravois, Kenneth A.;
Baisakh, Niranjan;
Prasad, M.

Publication type:

Article

Exploiting historical agronomic data to develop genomic prediction strategies for early clonal selection in the Louisiana sugarcane variety development program.

Published in:

Plant Genome, 2025, v. 18, n. 1, p. 1, doi. 10.1002/tpg2.20545

By:

Shahi, Dipendra;
Todd, James;
Gravois, Kenneth;
Hale, Anna;
Blanchard, Brayden;
Kimbeng, Collins;
Pontif, Michael;
Baisakh, Niranjan

Publication type:

Article

Registration of 'L 14‐267' sugarcane.

Published in:

Journal of Plant Registrations, 2023, v. 17, n. 2, p. 343, doi. 10.1002/plr2.20267

By:

Pontif, Michael;
Kimbeng, Collins;
Gravois, Kenneth;
Taylor, Zachary;
Sexton, David;
Blanchard, Brayden;
Daigle, Mavis;
Fontenot, Dexter;
Hawkins, Gertrude;
Hoy, Jeffrey;
Baisakh, Niranjan;
Wilson, Blake;
Orgeron, Albert;
Todd, James;
Hale, Anna;
Waguespack, Herman

Publication type:

Article

Registration of 'L 12‐201' sugarcane.

Published in:

Journal of Plant Registrations, 2022, v. 16, n. 2, p. 363, doi. 10.1002/plr2.20185

By:

Pontif, Michael;
Kimbeng, Collins;
Gravois, Kenneth;
Bischoff, Keith;
Sexton, David;
LaBorde, Christopher;
Hawkins, Gertrude;
Hoy, Jeffrey;
Baisakh, Niranjan;
Wilson, Blake;
Orgeron, Albert;
Todd, James;
Waguespack, Herman

Publication type:

Article

QTLs and Candidate Loci Associated with Drought Tolerance Traits of Kaybonnet x ZHE733 Recombinant Inbred Lines Rice Population.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15167, doi. 10.3390/ijms242015167

By:

Dwiningsih, Yheni;
Thomas, Julie;
Kumar, Anuj;
Gupta, Chirag;
Gill, Navdeep;
Ruiz, Charles;
Alkahtani, Jawaher;
Baisakh, Niranjan;
Pereira, Andy

Publication type:

Article

Circadian Rhythms in Legumes: What Do We Know and What Else Should We Explore?

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4588, doi. 10.3390/ijms22094588

By:

Kugan, Hazel Marie;
Rejab, Nur Ardiyana;
Sahruzaini, Nurul Amylia;
Harikrishna, Jennifer Ann;
Baisakh, Niranjan;
Cheng, Acga;
Acquaviva, Rosaria

Publication type:

Article

Particle bombardment and the genetic enhancement of crops: myths and realities.

Published in:

Molecular Breeding, 2005, v. 15, n. 3, p. 305, doi. 10.1007/s11032-004-8001-y

By:

Altpeter, Fredy;
Baisakh, Niranjan;
Beachy, Roger;
Bock, Ralph;
Capell, Teresa;
Christou, Paul;
Daniell, Henry;
Datta, Karabi;
Datta, Swapan;
Dix, Philip J.;
Fauquet, Claude;
Huang, Ning;
Kohli, Ajay;
Mooibroek, Hans;
Nicholson, Liz;
Nguyen, Thi;
Nugent, Gregory;
Raemakers, Krit;
Romano, Andrea;
Somers, David A.

Publication type:

Article

Molecular breeding: marker-assisted selection combined with biolistic transformation for blast and bacterial blight resistance in Indica rice (cv. CO39).

Published in:

Molecular Breeding, 2004, v. 14, n. 1, p. 61, doi. 10.1023/B:MOLB.0000037995.63856.2d

By:

Narayanan, Narayanan N.;
Baisakh, Niranjan;
Oliva, Norman P.;
VeraCruz, Casiana M.;
Gnanamanickam, Samuel S.;
Datta, Karabi;
Datta, Swapan K.

Publication type:

Article

Marker-free transgenic (MFT) near-isogenic introgression lines (NIILs) of ‘golden’ indica rice (cv. IR64) with accumulation of provitamin A in the endosperm tissue.

Published in:

Plant Biotechnology Journal, 2006, v. 4, n. 4, p. 467, doi. 10.1111/j.1467-7652.2006.00196.x

By:

Baisakh, Niranjan;
Rehana, Sayda;
Rai, Mayank;
Oliva, Norman;
Tan, Jing;
Mackill, David J.;
Khush, Gurdev S.;
Datta, Karabi;
Datta, Swapan K.

Publication type:

Article

Bioengineered ‘golden’ indica rice cultivars with β-carotene metabolism in the endosperm with hygromycin and mannose selection systems.

Published in:

Plant Biotechnology Journal, 2003, v. 1, n. 2, p. 81, doi. 10.1046/j.1467-7652.2003.00015.x

By:

Datta, Karabi;
Baisakh, Niranjan;
Oliva, Norman;
Torrizo, Lina;
Abrigo, Editha;
Tan, Jing;
Rai, Mayank;
Rehana, Sayda;
Al‐Babili, Salim;
Beyer, Peter;
Potrykus, Ingo;
Datta, Swapan K.

Publication type:

Article

Comprehensive meta-analysis of QTL and gene expression studies identify candidate genes associated with Aspergillus flavus resistance in maize.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1214907

By:

Baisakh, Niranjan;
Da Silva, Eduardo A.;
Pradhan, Anjan K.;
Rajasekaran, Kanniah

Publication type:

Article