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Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W481, doi. 10.1093/nar/gkae388
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- Publication type:
- Article
Integrated transcriptomics uncovers an enhanced association between the prion protein gene expression and vesicle dynamics signatures in glioblastomas.
- Published in:
- BMC Cancer, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12885-024-11914-6
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- Publication type:
- Article
Distinct shared and compartment-enriched oncogenic networks drive primary versus metastatic breast cancer.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39935-y
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- Publication type:
- Article
Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition.
- Published in:
- Cerebral Cortex, 2023, v. 33, n. 13, p. 8581, doi. 10.1093/cercor/bhad142
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- Publication type:
- Article
Adversarial training improves model interpretability in single-cell RNA-seq analysis.
- Published in:
- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad166
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- Publication type:
- Article
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35297-z
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- Publication type:
- Article
Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.
- Published in:
- 2022
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- Publication type:
- Correction Notice
Neurons and glial cells acquire a senescent signature after repeated mild traumatic brain injury in a sex-dependent manner.
- Published in:
- Frontiers in Neuroscience, 2022, v. 16, p. 1, doi. 10.3389/fnins.2022.1027116
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- Publication type:
- Article
Hypophosphorylated pRb knock‐in mice exhibit hallmarks of aging and vitamin C‐preventable diabetes.
- Published in:
- EMBO Journal, 2022, v. 41, n. 4, p. 1, doi. 10.15252/embj.2020106825
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- Publication type:
- Article
A Shared Transcriptional Identity for Forebrain and Dentate Gyrus Neural Stem Cells from Embryogenesis to Adulthood.
- Published in:
- eNeuro, 2022, v. 9, n. 1, p. 1, doi. 10.1523/ENEURO.0271-21.2021
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- Publication type:
- Article
Author- sourced capture of pathway knowledge in computable form using Biofactoid.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.68292
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- Publication type:
- Article
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab049
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- Publication type:
- Article
Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.64951
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- Publication type:
- Article
Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods.
- Published in:
- Nature Protocols, 2021, v. 16, n. 6, p. 2749, doi. 10.1038/s41596-021-00534-0
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- Publication type:
- Article
Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23329-z
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- Publication type:
- Article
Distinct DNA methylation patterns associated with treatment resistance in metastatic castration resistant prostate cancer.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85812-3
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- Publication type:
- Article
Biological and therapeutic implications of a unique subtype of NPM1 mutated AML.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21233-0
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- Publication type:
- Article
Large‐scale survey and database of high affinity ligands for peptide recognition modules.
- Published in:
- Molecular Systems Biology, 2020, v. 16, n. 12, p. 1, doi. 10.15252/msb.20199310
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- Publication type:
- Article
Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data.
- Published in:
- PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008205
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- Publication type:
- Article
Wnt activation as a therapeutic strategy in medulloblastoma.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-17953-4
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- Publication type:
- Article
The mitochondrial peptidase, neurolysin, regulates respiratory chain supercomplex formation and is necessary for AML viability.
- Published in:
- Science Translational Medicine, 2020, v. 12, n. 538, p. 1, doi. 10.1126/scitranslmed.aaz8264
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- Publication type:
- Article
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-019-0741-7
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- Publication type:
- Article
Integrative pathway enrichment analysis of multivariate omics data.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-13983-9
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- Publication type:
- Article
Combined burden and functional impact tests for cancer driver discovery using DriverPower.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-13929-1
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- Publication type:
- Article
Towards reliable named entity recognition in the biomedical domain.
- Published in:
- Bioinformatics, 2020, v. 36, n. 1, p. 280, doi. 10.1093/bioinformatics/btz504
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- Publication type:
- Article
Benchmarking to the Gold Standard: Hyaluronan‐Oxime Hydrogels Recapitulate Xenograft Models with In Vitro Breast Cancer Spheroid Culture.
- Published in:
- Advanced Materials, 2019, v. 31, n. 36, p. N.PAG, doi. 10.1002/adma.201901166
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- Publication type:
- Article
Bmi1 regulates human glioblastoma stem cells through activation of differential gene networks in CD133+ brain tumor initiating cells.
- Published in:
- Journal of Neuro-Oncology, 2019, v. 143, n. 3, p. 417, doi. 10.1007/s11060-019-03192-1
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- Publication type:
- Article
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0035
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- Publication type:
- Article
ARGLU1 is a transcriptional coactivator and splicing regulator important for stress hormone signaling and development.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2856, doi. 10.1093/nar/gkz010
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- Publication type:
- Article
Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression.
- Published in:
- Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0651-z
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- Publication type:
- Article
Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pgen.1007530
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- Publication type:
- Article
netDx: interpretable patient classification using integrated patient similarity networks.
- Published in:
- Molecular Systems Biology, 2019, v. 15, n. 3, p. N.PAG, doi. 10.15252/msb.20188497
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- Publication type:
- Article
Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.
- Published in:
- Nature Protocols, 2019, v. 14, n. 2, p. 482, doi. 10.1038/s41596-018-0103-9
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- Publication type:
- Article
Transfer learning for biomedical named entity recognition with neural networks.
- Published in:
- Bioinformatics, 2018, v. 34, n. 23, p. 4087, doi. 10.1093/bioinformatics/bty449
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- Publication type:
- Article
GeneMANIA update 2018.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W60, doi. 10.1093/nar/gky311
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- Publication type:
- Article
Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection.
- Published in:
- BMC Medical Genomics, 2018, v. 11, n. 1, p. 1, doi. 10.1186/s12920-018-0335-0
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- Publication type:
- Article
Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia.
- Published in:
- Proteomics, 2017, v. 17, n. 6, p. n/a, doi. 10.1002/pmic.201600361
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- Publication type:
- Article
Ten Simple Rules for Developing Public Biological Databases.
- Published in:
- 2016
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- Publication type:
- Editorial
RB1 deficiency in triple-negative breast cancer induces mitochondrial protein translation.
- Published in:
- 2016
- By:
- Publication type:
- journal article
Transcriptomic analysis reveals abnormal muscle repair and remodeling in survivors of critical illness with sustained weakness.
- Published in:
- Scientific Reports, 2016, p. 29334, doi. 10.1038/srep29334
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- Publication type:
- Article
Predicting physiologically relevant SH3 domain mediated protein-protein interactions in yeast.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. 1865, doi. 10.1093/bioinformatics/btw045
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- Publication type:
- Article
Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0311-2
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- Publication type:
- Article
HOX gene complement and expression in the planarian Schmidtea mediterranea.
- Published in:
- EvoDevo, 2016, v. 7, p. 1, doi. 10.1186/s13227-016-0044-8
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- Publication type:
- Article
Cytoscape.js: a graph theory library for visualisation and analysis.
- Published in:
- Bioinformatics, 2016, v. 32, n. 2, p. 309, doi. 10.1093/bioinformatics/btv557
- By:
- Publication type:
- Article
Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.
- Published in:
- Nature Communications, 2015, v. 6, n. 10, p. 8554, doi. 10.1038/ncomms9554
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- Publication type:
- Article
GreedyPlus: An Algorithm for the Alignment of Interface Interaction Networks.
- Published in:
- Scientific Reports, 2015, p. 12074, doi. 10.1038/srep12074
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- Publication type:
- Article
Inferring interaction type in gene regulatory networks using co-expression data.
- Published in:
- Algorithms for Molecular Biology, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13015-015-0054-4
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- Publication type:
- Article
Metabolomic profiling in liver of adiponectin-knockout mice uncovers lysophospholipid metabolism as an important target of adiponectin action.
- Published in:
- Biochemical Journal, 2015, v. 469, n. 1, p. 71, doi. 10.1042/BJ20141455
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- Publication type:
- Article
MIMP: predicting the impact of mutations on kinase-substrate phosphorylation.
- Published in:
- Nature Methods, 2015, v. 12, n. 6, p. 531, doi. 10.1038/nmeth.3396
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- Publication type:
- Article
Cardioprotective Signature of Short-Term Caloric Restriction.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130658
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- Publication type:
- Article