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Endogenous retroviral promoter exaptation in human cancer.
Published in:
Mobile DNA, 2016, v. 7, p. 1, doi. 10.1186/s13100-016-0080-x
By:
- Babaian, Artem;
- Mager, Dixie L.
Publication type:
Article
Hybrids of RNA viruses and viroid-like elements replicate in fungi.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38301-2
By:
- Forgia, Marco;
- Navarro, Beatriz;
- Daghino, Stefania;
- Cervera, Amelia;
- Gisel, Andreas;
- Perotto, Silvia;
- Aghayeva, Dilzara N.;
- Akinyuwa, Mary F.;
- Gobbi, Emanuela;
- Zheludev, Ivan N.;
- Edgar, Robert C.;
- Chikhi, Rayan;
- Turina, Massimo;
- Babaian, Artem;
- Di Serio, Francesco;
- de la Peña, Marcos
Publication type:
Article
Visualized Computational Predictions of Transcriptional Effects by Intronic Endogenous Retroviruses.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071971
By:
- Zhang, Ying;
- Babaian, Artem;
- Gagnier, Liane;
- Mager, Dixie L.
Publication type:
Article
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10510-8
By:
- Kusakabe, Manabu;
- Sun, Ann Chong;
- Tyshchenko, Kateryna;
- Wong, Rachel;
- Nanda, Aastha;
- Shanna, Claire;
- Gusscott, Samuel;
- Chavez, Elizabeth A.;
- Lorzadeh, Alireza;
- Zhu, Alice;
- Hill, Ainsleigh;
- Hung, Stacy;
- Brown, Scott;
- Babaian, Artem;
- Wang, Xuehai;
- Holt, Robert A.;
- Steidl, Christian;
- Karsan, Aly;
- Humphries, R. Keith;
- Eaves, Connie J.
Publication type:
Article
Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities.
Published in:
Frontiers in Virology, 2024, p. 1, doi. 10.3389/fviro.2024.1371958
By:
- Charon, Justine;
- Olendraite, Ingrida;
- Forgia, Marco;
- Li Chuin Chong;
- Hillary, Luke S.;
- Roux, Simon;
- Kupczok, Anne;
- Debat, Humberto;
- Sakaguchi, Shoichi;
- Tahzima, Rachid;
- Nakagawa, So;
- Babaian, Artem;
- Abroi, Aare;
- Bejerman, Nicolas;
- Mansour, Karima Ben;
- Brown, Katherine;
- Butkovic, Anamarija;
- Cervera, Amelia;
- Charriat, Florian;
- Guowei Chen
Publication type:
Article
The International Virus Bioinformatics Meeting 2023.
Published in:
Viruses (1999-4915), 2023, v. 15, n. 10, p. 2031, doi. 10.3390/v15102031
By:
- Hufsky, Franziska;
- Abecasis, Ana B.;
- Babaian, Artem;
- Beck, Sebastian;
- Brierley, Liam;
- Dellicour, Simon;
- Eggeling, Christian;
- Elena, Santiago F.;
- Gieraths, Udo;
- Ha, Anh D.;
- Harvey, Will;
- Jones, Terry C.;
- Lamkiewicz, Kevin;
- Lovate, Gabriel L.;
- Lücking, Dominik;
- Machyna, Martin;
- Nishimura, Luca;
- Nocke, Maximilian K.;
- Renard, Bernard Y.;
- Sakaguchi, Shoichi
Publication type:
Article
Ribovirus classification by a polymerase barcode sequence.
Published in:
PeerJ, 2022, p. 1, doi. 10.7717/peerj.14055
By:
- Babaian, Artem;
- Edgar, Robert
Publication type:
Article
bioSyntax: syntax highlighting for computational biology.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2315-y
By:
- Babaian, Artem;
- Ebou, Anicet;
- Fegen, Alyssa;
- Kam, Ho Yin;
- Novakovsky, German E.;
- Wong, Jasper;
- Aïssi, Dylan;
- Yao, Li
Publication type:
Article
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq.
Published in:
Bioinformatics, 2019, v. 35, n. 19, p. 3839, doi. 10.1093/bioinformatics/btz130
By:
- Babaian, Artem;
- Thompson, I Richard;
- Lever, Jake;
- Gagnier, Liane;
- Karimi, Mohammad M;
- Mager, Dixie L
Publication type:
Article
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer.
Published in:
PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180659
By:
- Kuah, Sabrina;
- Weberling, Antonia;
- Lock, Frances E.;
- Babaian, Artem;
- Zhang, Ying;
- Gagnier, Liane;
- Mager, Dixie L.;
- Karimi, Mohammad M.
Publication type:
Article

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