Works by Baba, Seiki

Results: 36

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 18, p. 5184, doi. 10.1093/nar/gkl664

By:

Nomura, Yusuke;
Kajikawa, Masaki;
Baba, Seiki;
Nakazato, Shinta;
Imai, Takayuki;
Sakamoto, Taiichi;
Okada, Norihiro;
Kawai, Gota

Publication type:

Article

A temperature‐controlled cold‐gas humidifier and its application to protein crystals with the humid‐air and glue‐coating method.

Published in:

Journal of Applied Crystallography, 2019, v. 52, n. 4, p. 699, doi. 10.1107/S1600576719006435

By:

Baba, Seiki;
Shimada, Atsuhiro;
Mizuno, Nobuhiro;
Baba, Junpei;
Ago, Hideo;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article

X-ray diffraction from magnetically oriented microcrystal suspensions detected by a shutterless continuous rotation method.

Published in:

Journal of Applied Crystallography, 2016, v. 49, n. 6, p. 2100, doi. 10.1107/S160057671601534X

By:

Tsuboi, Chiaki;
Tsukui, Shu;
Kimura, Fumiko;
Kimura, Tsunehisa;
Hasegawa, Kazuya;
Baba, Seiki;
Mizuno, Nobuhiro

Publication type:

Article

X-ray crystal structure analysis of magnetically oriented microcrystals of lysozyme at 1.8 Å resolution.

Published in:

Journal of Applied Crystallography, 2016, v. 49, n. 2, p. 457, doi. 10.1107/S1600576716001357

By:

Tsukui, Shu;
Kimura, Fumiko;
Garman, Elspeth F.;
Baba, Seiki;
Mizuno, Nobuhiro;
Mikami, Bunzo;
Kimura, Tsunehisa

Publication type:

Article

Crystal sample pins and a storage cassette system compatible with the protein crystallography beamlines at both the Photon Factory and SPring-8.

Published in:

Journal of Applied Crystallography, 2012, v. 45, n. 6, p. 1156, doi. 10.1107/S002188981203734X

By:

Fujihashi, Masahiro;
Hiraki, Masahiko;
Ueno, Go;
Baba, Seiki;
Murakami, Hironori;
Suzuki, Mamoru;
Watanabe, Nobuhisa;
Tanaka, Isao;
Nakagawa, Atsushi;
Wakatsuki, Soichi;
Yamamoto, Masaki;
Miki, Kunio

Publication type:

Article

High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine.

Published in:

PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 3, p. 269, doi. 10.1093/protein/gzq101

By:

Ito, Len;
Shiraki, Kentaro;
Matsuura, Takanori;
Okumura, Masaki;
Hasegawa, Kazuya;
Baba, Seiki;
Yamaguchi, Hiroshi;
Kumasaka, Takashi

Publication type:

Article

dUTP pyrophosphatases from hyperthermophilic eubacterium and archaeon: Structural and functional examinations on the suitability for PCR application.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 11, p. 1, doi. 10.1002/pro.5185

By:

Fukui, Kenji;
Kondo, Naoyuki;
Murakawa, Takeshi;
Baba, Seiki;
Kumasaka, Takashi;
Yano, Takato

Publication type:

Article

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174921

By:

Inoguchi, Noriko;
Mizuno, Nobuhiro;
Baba, Seiki;
Kumasaka, Takashi;
Natarajan, Chandrasekhar;
Storz, Jay F.;
Moriyama, Hideaki

Publication type:

Article

Solution RNA Structures of the HIV-1 Dimerization Initiation Site in the Kissing-Loop and Extended-Duplex Dimers.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 5, p. 583, doi. 10.1093/jb/mvi158

By:

Baba, Seiki;
Takahashi, Ken-ichi;
Noguchi, Satoko;
Takaku, Hiroshi;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Kawai, Gota

Publication type:

Article

Role of the Zinc Fingers of HIV-1 Nucleocapsid Protein in Maturation of Genomic RNA.

Published in:

Journal of Biochemistry, 2003, v. 134, n. 5, p. 637, doi. 10.1093/jb/mvg200

By:

Baba, Seiki;
Takahashi, Ken-ichi;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Takaku, Hiroshi;
Gorelick, Robert J.;
Kawai, Gota

Publication type:

Article

NMR Analysis of Intra- and Inter-Molecular Stems in the Dimerization Initiation Site of the HIV-1 Genome1.

Published in:

Journal of Biochemistry, 2000, v. 127, n. 4, p. 681, doi. 10.1093/oxfordjournals.jbchem.a022657

By:

Takahashi, Ken-ichi;
Baba, Seiki;
Hayashi, Yojiro;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Takaku, Hiroshi;
Kawai, Gota

Publication type:

Article

Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.

Published in:

Life Science Alliance, 2023, v. 6, n. 10, p. 1, doi. 10.26508/lsa.202302001

By:

Kenji Fukui;
Tatsuya Yamamoto;
Takeshi Murakawa;
Seiki Baba;
Takashi Kumasaka;
Takato Yano

Publication type:

Article

Crystal structure of guanosine 5′‐monophosphate synthetase from the thermophilic bacterium Thermus thermophilus HB8.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2024, v. 80, n. 10, p. 278, doi. 10.1107/S2053230X2400877X

By:

Nemoto, Naoki;
Baba, Seiki;
Kawai, Gota;
Sampei, Gen-ichi

Publication type:

Article

Guidelines for de novo phasing using multiple small‐wedge data collection. Corrigendum.

Published in:

Journal of Synchrotron Radiation, 2022, v. 29, n. 2, p. 593, doi. 10.1107/S1600577522001655

By:

Baba, Seiki;
Matsuura, Hiroaki;
Kawamura, Takashi;
Sakai, Naoki;
Nakamura, Yuki;
Kawano, Yoshiaki;
Mizuno, Nobuhiro;
Kumasaka, Takashi;
Yamamoto, Masaki;
Hirata, Kunio

Publication type:

Article

Guidelines for de novo phasing using multiple small‐wedge data collection.

Published in:

Journal of Synchrotron Radiation, 2021, v. 28, n. 5, p. 1284, doi. 10.1107/S1600577521008067

By:

Baba, Seiki;
Matsuura, Hiroaki;
Kawamura, Takashi;
Sakai, Naoki;
Nakamura, Yuki;
Kawano, Yoshiaki;
Mizuno, Nobuhiro;
Kumasaka, Takashi;
Yamamoto, Masaki;
Hirata, Kunio

Publication type:

Article

Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.

Published in:

Journal of Biochemistry, 2024, v. 175, n. 6, p. 671, doi. 10.1093/jb/mvae010

By:

Kawai, Gota;
Okada, Kiyoshi;
Baba, Seiki;
Sato, Asako;
Sakamoto, Taiichi;
Kanai, Akio

Publication type:

Article

X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.

Published in:

Journal of Biochemistry, 2020, v. 167, n. 6, p. 549, doi. 10.1093/jb/mvaa045

By:

Ohnishi, Yusuke;
Muraki, Norifumi;
Kiyota, Daiki;
Okumura, Hideo;
Baba, Seiki;
Kawano, Yoshiaki;
Kumasaka, Takashi;
Tanaka, Hideaki;
Kurisu, Genji

Publication type:

Article

Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 313, doi. 10.1093/jb/mvv107

By:

Mayumi Kanagawa;
Seiki Baba;
Yuzo Watanabe;
Noriko Nakagawa;
Akio Ebihara;
Seiki Kuramitsu;
Shigeyuki Yokoyama;
Gen-ichi Sampei;
Gota Kawai

Publication type:

Article

Structures and reaction mechanisms of the two related enzymes, PurN and PurU.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 569, doi. 10.1093/jb/mvt090

By:

Sampei, Gen-ichi;
Kanagawa, Mayumi;
Baba, Seiki;
Shimasaki, Toshiaki;
Taka, Hiroyuki;
Mitsui, Shohei;
Fujiwara, Shinji;
Yanagida, Yuki;
Kusano, Mayumi;
Suzuki, Sakiko;
Terao, Kayoko;
Kawai, Hiroya;
Fukai, Yoko;
Nakagawa, Noriko;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria.

Published in:

Journal of Biochemistry, 2010, v. 148, n. 4, p. 429, doi. 10.1093/jb/mvq088

By:

Sampei, Gen-ichi;
Baba, Seiki;
Kanagawa, Mayumi;
Yanai, Hisaaki;
Ishii, Takeshi;
Kawai, Hiroya;
Fukai, Yoko;
Ebihara, Akio;
Nakagawa, Noriko;
Kawai, Gota

Publication type:

Article

Covalent Incorporation of Methyl Red Dyes into Double-Stranded DNA for Their Ordered Clustering.

Published in:

Chemistry - A European Journal, 2006, v. 12, n. 3, p. 777, doi. 10.1002/chem.200500111

By:

Hiromu Kashida;
Masayuki Tanaka;
Seiki Baba;
Taiichi Sakamoto;
Gota Kawai;
Hiroyuki Asanuma;
Makoto Komiyama

Publication type:

Article

Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.

Published in:

Biophysics & Physicobiology, 2022, v. 19, p. 1, doi. 10.2142/biophysico.bppb-v19.0019

By:

Nobutaka Numoto;
Seiko Onoda;
Yoshiaki Kawano;
Hideo Okumura;
Seiki Baba;
Yoshihiro Fukumori;
Kunio Miki;
Nobutoshi Ito

Publication type:

Article

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1856, doi. 10.1093/nar/gkr892

By:

Someya, Tatsuhiko;
Baba, Seiki;
Fujimoto, Mai;
Kawai, Gota;
Kumasaka, Takashi;
Nakamura, Kouji

Publication type:

Article

Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from <italic>Aquifex aeolicus</italic>.

Published in:

FEBS Letters, 2018, v. 592, n. 9, p. 1611, doi. 10.1002/1873-3468.13050

By:

Fukui, Kenji;
Baba, Seiki;
Kumasaka, Takashi;
Yano, Takato

Publication type:

Article

Radiation‐induced defects in protein crystals observed by X‐ray topography.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2022, v. 78, n. 2, p. 196, doi. 10.1107/S205979832101281X

By:

Suzuki, Ryo;
Baba, Seiki;
Mizuno, Nobuhiro;
Hasegawa, Kazuya;
Koizumi, Haruhiko;
Kojima, Kenichi;
Kumasaka, Takashi;
Tachibana, Masaru

Publication type:

Article

Evaluation of the data‐collection strategy for room‐temperature micro‐crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue‐coating method.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 3, p. 300, doi. 10.1107/S2059798321001686

By:

Hasegawa, Kazuya;
Baba, Seiki;
Kawamura, Takashi;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article

Neutron and X-ray single-crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2016, v. 72, n. 7, p. 823, doi. 10.1107/S2059798316007415

By:

Shu Tsukui;
Fumiko Kimura;
Katsuhiro Kusaka;
Seiki Baba;
Nobuhiro Mizuno;
Tsunehisa Kimura

Publication type:

Article

Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal.

Published in:

Scientific Reports, 2016, p. 25931, doi. 10.1038/srep25931

By:

Matsumoto, Shigeyuki;
Miyano, Nao;
Baba, Seiki;
Liao, Jingling;
Kawamura, Takashi;
Tsuda, Chiemi;
Takeda, Azusa;
Yamamoto, Masaki;
Kumasaka, Takashi;
Kataoka, Tohru;
Shima, Fumi

Publication type:

Article

Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii.

Published in:

Proteins, 2010, v. 78, n. 10, p. 2395, doi. 10.1002/prot.22748

By:

Nishida, Yuya;
Ishikawa, Hirohito;
Baba, Seiki;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

In situ crystal data‐collection and ligand‐screening system at SPring‐8.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2022, v. 78, n. 6, p. 241, doi. 10.1107/S2053230X22005283

By:

Okumura, Hideo;
Sakai, Naoki;
Murakami, Hironori;
Mizuno, Nobuhiro;
Nakamura, Yuki;
Ueno, Go;
Masunaga, Takuya;
Kawamura, Takashi;
Baba, Seiki;
Hasegawa, Kazuya;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article

Computer‐controlled liquid‐nitrogen drizzling device for removing frost from cryopreserved crystals.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2020, v. 76, n. 12, p. 616, doi. 10.1107/S2053230X2001420X

By:

Nakamura, Yuki;
Baba, Seiki;
Mizuno, Nobuhiro;
Irie, Takaki;
Ueno, Go;
Hirata, Kunio;
Ito, Sho;
Hasegawa, Kazuya;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 8, p. 627, doi. 10.1107/S2053230X1600978X

By:

Watanabe, Yuzo;
Yanai, Hisaaki;
Kanagawa, Mayumi;
Suzuki, Sakiko;
Tamura, Satoko;
Okada, Kiyoshi;
Baba, Seiki;
Kumasaka, Takashi;
Agari, Yoshihiro;
Chen, Lirong;
Fu, Zheng-Qing;
Chrzas, John;
Wang, Bi-Cheng;
Nakagawa, Noriko;
Ebihara, Akio;
Masui, Ryoji;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Sampei, Gen-ichi;
Kawai, Gota

Publication type:

Article

Structure of 4-pyridoxolactonase from Mesorhizobium loti.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 4, p. 424, doi. 10.1107/S2053230X14003926

By:

Kobayashi, Jun;
Yoshikane, Yu;
Yagi, Toshiharu;
Baba, Seiki;
Mizutani, Kimihiko;
Takahashi, Nobuyuki;
Mikami, Bunzo

Publication type:

Article

Metagenomic mining and structure-function studies of a hyper-thermostable cellobiohydrolase from hot spring sediment.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03195-1

By:

Takeda, Migiwa;
Baba, Seiki;
Okuma, Jiro;
Hirose, Yoshitsugu;
Nishimura, Asuka;
Takata, Masaki;
Oda, Kohei;
Shibata, Daisuke;
Kumasaka, Takashi;
Kondo, Yasuhiro

Publication type:

Article

Development of an online UV-visible microspectrophotometer for a macromolecular crystallography beamline.

Published in:

Journal of Synchrotron Radiation, 2013, v. 20, n. 6, p. 948, doi. 10.1107/S0909049513022887

By:

Shimizu, Nobutaka;
Shimizu, Tetsuya;
Baba, Seiki;
Hasegawa, Kazuya;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article

SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

Published in:

Journal of Synchrotron Radiation, 2013, v. 20, n. 6, p. 910, doi. 10.1107/S0909049513022176

By:

Hasegawa, Kazuya;
Shimizu, Nobutaka;
Okumura, Hideo;
Mizuno, Nobuhiro;
Baba, Seiki;
Hirata, Kunio;
Takeuchi, Tomoyuki;
Yamazaki, Hiroshi;
Senba, Yasunori;
Ohashi, Haruhiko;
Yamamoto, Masaki;
Kumasaka, Takashi

Publication type:

Article