Works by Autio, Reija

Results: 38

Genome, Environment, Microbiome and Metabolome in Autism (GEMMA) Study Design: Biomarkers Identification for Precision Treatment and Primary Prevention of Autism Spectrum Disorders by an Integrated Multi-Omics Systems Biology Approach.
Published in:
Brain Sciences (2076-3425), 2020, v. 10, n. 10, p. 743, doi. 10.3390/brainsci10100743
By:
- Troisi, Jacopo;
- Autio, Reija;
- Beopoulos, Thanos;
- Bravaccio, Carmela;
- Carraturo, Federica;
- Corrivetti, Giulio;
- Cunningham, Stephen;
- Devane, Samantha;
- Fallin, Daniele;
- Fetissov, Serguei;
- Gea, Manuel;
- Giorgi, Antonio;
- Iris, François;
- Joshi, Lokesh;
- Kadzielski, Sarah;
- Kraneveld, Aletta;
- Kumar, Himanshu;
- Ladd-Acosta, Christine;
- Leader, Geraldine;
- Mannion, Arlene
Publication type:
Article
Mental health service diversity and work disability: associations of mental health service system characteristics and mood disorder disability pensioning in Finland.
Published in:
Social Psychiatry & Psychiatric Epidemiology, 2024, v. 59, n. 4, p. 631, doi. 10.1007/s00127-023-02481-5
By:
- Karolaakso, Tino;
- Autio, Reija;
- Suontausta, Petra;
- Leppänen, Helena;
- Rissanen, Päivi;
- Näppilä, Turkka;
- Tuomisto, Martti T.;
- Pirkola, Sami
Publication type:
Article
High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity.
Published in:
Nature Biotechnology, 2010, v. 28, n. 4, p. 371, doi. 10.1038/nbt.1615
By:
- Närvä, Elisa;
- Autio, Reija;
- Rahkonen, Nelly;
- Kong, Lingjia;
- Harrison, Neil;
- Kitsberg, Danny;
- Borghese, Lodovica;
- Itskovitz-Eldor, Joseph;
- Rasool, Omid;
- Dvorak, Petr;
- Hovatta, Outi;
- Otonkoski, Timo;
- Tuuri, Timo;
- Cui, Wei;
- Brüstle, Oliver;
- Baker, Duncan;
- Maltby, Edna;
- Moore, Harry D.;
- Benvenisty, Nissim;
- Andrews, Peter W.
Publication type:
Article
ESTOOLS Data@Hand: human stem cell gene expression resource.
Published in:
Nature Methods, 2013, v. 10, n. 9, p. 814, doi. 10.1038/nmeth.2576
By:
- Kong, Lingjia;
- Aho, Kaisa-Leena;
- Granberg, Kirsi;
- Lund, Riikka;
- Järvenpää, Laura;
- Seppälä, Janne;
- Gokhale, Paul;
- Leinonen, Kalle;
- Hahne, Lauri;
- Mäkelä, Jarno;
- Laurila, Kirsti;
- Pukkila, Heidi;
- Närvä, Elisa;
- Yli-Harja, Olli;
- Andrews, Peter W;
- Nykter, Matti;
- Lahesmaa, Riitta;
- Roos, Christophe;
- Autio, Reija
Publication type:
Article
Advanced analysis and visualization of gene copy number and expression data.
Published in:
BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S70
By:
- Autio, Reija;
- Saarela, Matti;
- Järvinen, Anna-Kaarina;
- Hautaniemi, Sampsa;
- Astola, Jaakko
Publication type:
Article
Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.
Published in:
BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S24
By:
- Autio, Reija;
- Kilpinen, Sami;
- Saarela, Matti;
- Kallioniemi, Olli;
- Hautaniemi, Sampsa;
- Astola, Jaakko
Publication type:
Article
Copy number variation and selection during reprogramming to pluripotency.
Published in:
Nature, 2011, v. 471, n. 7336, p. 58, doi. 10.1038/nature09871
By:
- Hussein, Samer M.;
- Batada, Nizar N.;
- Vuoristo, Sanna;
- Ching, Reagan W.;
- Autio, Reija;
- Närvä, Elisa;
- Ng, Siemon;
- Sourour, Michel;
- Hämäläinen, Riikka;
- Olsson, Cia;
- Lundin, Karolina;
- Mikkola, Milla;
- Trokovic, Ras;
- Peitz, Michael;
- Brüstle, Oliver;
- Bazett-Jones, David P.;
- Alitalo, Kari;
- Lahesmaa, Riitta;
- Nagy, Andras;
- Otonkoski, Timo
Publication type:
Article
Associations Between Serum Fatty Acids and Immunological Markers in Children Developing Islet Autoimmunity—The TRIGR Nested Case–Control Study.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.858875
By:
- Niinistö, Sari;
- Miettinen, Maija E.;
- Cuthbertson, David;
- Honkanen, Jarno;
- Hakola, Leena;
- Autio, Reija;
- Erlund, Iris;
- Arohonka, Petra;
- Vuorela, Arja;
- Härkönen, Taina;
- Hyöty, Heikki;
- Krischer, Jeffrey P.;
- Vaarala, Outi;
- Knip, Mikael;
- Virtanen, Suvi M.
Publication type:
Article
Comparing a Digital Health Check With Traditional Nurse-Led Health Examinations Among Long-Term Unemployed Individuals: Comparison Study.
Published in:
Journal of Medical Internet Research, 2024, v. 26, p. 1, doi. 10.2196/49802
By:
- Raussi, Venla;
- Kujala, Sari;
- Hörhammer, Iiris;
- Savolainen, Kaisa;
- Autio, Reija;
- Koskela, Tuomas
Publication type:
Article
Tensorial Principal Component Analysis in Detecting Temporal Trajectories of Purchase Patterns in Loyalty Card Data: Retrospective Cohort Study.
Published in:
Journal of Medical Internet Research, 2023, v. 25, n. 1, p. 1, doi. 10.2196/44599
By:
- Autio, Reija;
- Virta, Joni;
- Nordhausen, Klaus;
- Fogelholm, Mikael;
- Erkkola, Maijaliisa;
- Nevalainen, Jaakko
Publication type:
Article
POMO - Plotting Omics analysis results for Multiple Organisms.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-918
By:
- Lin, Jake;
- Kreisberg, Richard;
- Kallio, Aleksi;
- Dudley, Aimée M.;
- Nykter, Matti;
- Shmulevich, Ilya;
- May, Patrick;
- Autio, Reija
Publication type:
Article
Socioeconomic status, psychotherapy duration, and return to work from disability due to common mental disorders.
Published in:
Psychotherapy Research, 2024, v. 34, n. 5, p. 694, doi. 10.1080/10503307.2023.2229500
By:
- Leppänen, Helena;
- Kampman, Olli;
- Autio, Reija;
- Karolaakso, Tino;
- Rissanen, Päivi;
- Näppilä, Turkka;
- Pirkola, Sami
Publication type:
Article
Adipose Tissue Dysfunction and Altered Systemic Amino Acid Metabolism Are Associated with Non-Alcoholic Fatty Liver Disease.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0138889
By:
- Cheng, Sulin;
- Wiklund, Petri;
- Autio, Reija;
- Borra, Ronald;
- Ojanen, Xiaowei;
- Xu, Leiting;
- Törmäkangas, Timo;
- Alen, Markku
Publication type:
Article
In‐vitro dissolution characteristics and human adipose stem cell response to novel borophosphate glasses.
Published in:
Journal of Biomedical Materials Research, Part A, 2019, v. 107, n. 9, p. 2099, doi. 10.1002/jbm.a.36722
By:
- Mishra, Ayush;
- Ojansivu, Miina;
- Autio, Reija;
- Vanhatupa, Sari;
- Miettinen, Susanna;
- Massera, Jonathan
Publication type:
Article
Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress.
Published in:
BMC Microbiology, 2015, v. 15, p. 1, doi. 10.1186/s12866-015-0565-7
By:
- Sara Urmersbach;
- Tommi Aho;
- Thomas Alter;
- Syeda Sakira Hassan;
- Reija Autio;
- Stephan Huehn
Publication type:
Article
Selective Classes and Early Health Inequalities in Comprehensive Schools in Finland.
Published in:
Journal of School Health, 2024, v. 94, n. 9, p. 820, doi. 10.1111/josh.13488
By:
- Kesanto‐Jokipolvi, Heidi;
- Seppänen, Piia;
- Koivuhovi, Satu;
- Siipola, Mari;
- Autio, Reija;
- Rimpelä, Arja
Publication type:
Article
Exploring autism spectrum disorder and co-occurring trait associations to elucidate multivariate genetic mechanisms and insights.
Published in:
BMC Psychiatry, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12888-024-06392-w
By:
- Salenius, Karoliina;
- Väljä, Niina;
- Thusberg, Sini;
- Iris, Francois;
- Ladd-Acosta, Christine;
- Roos, Christophe;
- Nykter, Matti;
- Fasano, Alessio;
- Autio, Reija;
- Lin, Jake
Publication type:
Article
Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women.
Published in:
Scientific Reports, 2016, p. 24540, doi. 10.1038/srep24540
By:
- Wiklund, Petri;
- Zhang, Xiaobo;
- Pekkala, Satu;
- Autio, Reija;
- Kong, Lingjia;
- Yang, Yifan;
- Keinänen-Kiukaanniemi, Sirkka;
- Alen, Markku;
- Cheng, Sulin
Publication type:
Article
Socioeconomic factors in disability retirement due to mental disorders in Finland.
Published in:
European Journal of Public Health, 2020, v. 30, n. 6, p. 1218, doi. 10.1093/eurpub/ckaa132
By:
- Karolaakso, Tino;
- Autio, Reija;
- Näppilä, Turkka;
- Nurmela, Kirsti;
- Pirkola, Sami
Publication type:
Article
Patterns of mental health services and mood disorder disability pensions: a standard comparison of Finland's three largest hospital districts.
Published in:
BMC Psychiatry, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12888-023-05342-2
By:
- Karolaakso, Tino;
- Autio, Reija;
- Suontausta, Petra;
- Leppänen, Helena;
- Suokas, Kimmo;
- Rissanen, Päivi;
- Tuomisto, Martti T.;
- Pirkola, Sami
Publication type:
Article
Toll-like receptor 5 in obesity: The role of gut microbiota and adipose tissue inflammation.
Published in:
Obesity (19307381), 2015, v. 23, n. 3, p. 581, doi. 10.1002/oby.20993
By:
- Pekkala, Satu;
- Munukka, Eveliina;
- Kong, Lingjia;
- Pöllänen, Eija;
- Autio, Reija;
- Roos, Christophe;
- Wiklund, Petri;
- Fischer‐Posovszky, Pamela;
- Wabitsch, Martin;
- Alen, Markku;
- Huovinen, Pentti;
- Cheng, Sulin
Publication type:
Article
MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer.
Published in:
International Journal of Cancer, 2011, v. 129, n. 11, p. 2553, doi. 10.1002/ijc.25924
By:
- Kuuselo, Riina;
- Savinainen, Kimmo;
- Sandström, Saana;
- Autio, Reija;
- Kallioniemi, Anne
Publication type:
Article
Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes.
Published in:
International Journal of Cancer, 2008, v. 123, n. 4, p. 817, doi. 10.1002/ijc.23574
By:
- Myllykangas, Samuel;
- Junnila, Siina;
- Kokkola, Arto;
- Autio, Reija;
- Scheinin, Ilari;
- Kiviluoto, Tuula;
- Karjalainen-Lindsberg, Marja-Liisa;
- Hollmén, Jaakko;
- Knuutila, Sakari;
- Puolakkainen, Pauli;
- Monni, Outi
Publication type:
Article
Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells.
Published in:
BioData Mining, 2014, v. 7, n. 1, p. 15, doi. 10.1186/s13040-014-0032-2
By:
- Laurila, Kirsti;
- Autio, Reija;
- Kong, Lingjia;
- Närvä, Elisa;
- Hussein, Samer;
- Otonkoski, Timo;
- Lahesmaa, Riitta;
- Lähdesmäki, Harri
Publication type:
Article
RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation.
Published in:
Stem Cells, 2012, v. 30, n. 3, p. 452, doi. 10.1002/stem.1013
By:
- Närvä, Elisa;
- Rahkonen, Nelly;
- Emani, Maheswara Reddy;
- Lund, Riikka;
- Pursiheimo, Juha-Pekka;
- Nästi, Juuso;
- Autio, Reija;
- Rasool, Omid;
- Denessiouk, Konstantin;
- Lähdesmäki, Harri;
- Rao, Anjana;
- Lahesmaa, Riitta
Publication type:
Article
Contextual and mental health service factors in mental disorder-based disability pensioning in Finland - a regional comparison.
Published in:
2021
By:
- Karolaakso, Tino;
- Autio, Reija;
- Näppilä, Turkka;
- Leppänen, Helena;
- Rissanen, Päivi;
- Tuomisto, Martti T.;
- Karvonen, Sakari;
- Pirkola, Sami
Publication type:
journal article
Both inhibition and enhanced expression of miR-31 lead to reduced migration and invasion of pancreatic cancer cells.
Published in:
Genes, Chromosomes & Cancer, 2012, v. 51, n. 6, p. 557, doi. 10.1002/gcc.21941
By:
- Laurila, Eeva M.;
- Sandström, Saana;
- Rantanen, Laura M.;
- Autio, Reija;
- Kallioniemi, Anne
Publication type:
Article
High-resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx.
Published in:
Genes, Chromosomes & Cancer, 2008, v. 47, n. 6, p. 500, doi. 10.1002/gcc.20551
By:
- Järvinen, Anna-Kaarina;
- Autio, Reija;
- Kilpinen, Sami;
- Saarela, Matti;
- Leivo, Ilmo;
- Grénman, Reidar;
- Mäkitie, Antti A.;
- Monni, Outi
Publication type:
Article
CGH-Plotter: MATLAB toolbox for CGH-data analysis.
Published in:
Bioinformatics, 2003, v. 19, n. 13, p. 1714, doi. 10.1093/bioinformatics/btg230
By:
- Reija Autio;
- Sampsa Hautaniemi;
- Päivikki Kauraniemi;
- Olli Yli-Harja;
- Jaakko Astola;
- Maija Wolf;
- Anne Kallioniemi
Publication type:
Article
Socioeconomic factors and use of psychotherapy in common mental disorders predisposing to disability pension.
Published in:
BMC Health Services Research, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12913-022-08389-1
By:
- Leppänen, Helena;
- Kampman, Olli;
- Autio, Reija;
- Karolaakso, Tino;
- Näppilä, Turkka;
- Rissanen, Päivi;
- Pirkola, Sami
Publication type:
Article
Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3721-7
By:
- Lin, Jake;
- Kramna, Lenka;
- Autio, Reija;
- Hyöty, Heikki;
- Nykter, Matti;
- Cinek, Ondrej
Publication type:
Article
Bone Morphogenetic Protein-2 Induces Donor-Dependent Osteogenic and Adipogenic Differentiation in Human Adipose Stem Cells.
Published in:
Stem Cells Translational Medicine, 2015, v. 4, n. 12, p. 1391, doi. 10.5966/sctm.2015-0042
By:
- VANHATUPA, SARI;
- OJANSIVU, MIINA;
- AUTIO, REIJA;
- JUNTUNEN, MIIA;
- MIETTINEN, SUSANNA
Publication type:
Article
Impact of the first response unit on prehospital on-scene time among paramedic-suspected stroke patients: a retrospective before–after cohort study in Finland.
Published in:
Scandinavian Journal of Trauma, Resuscitation & Emergency Medicine, 2023, v. 31, n. 1, p. 1, doi. 10.1186/s13049-023-01089-7
By:
- Vaajanen, Verna K.E.;
- Vuorinen, Pauli E.T.;
- Setälä, Piritta A.;
- Autio, Reija;
- Hoppu, Sanna E.
Publication type:
Article
Serum fatty acids and risk of developing islet autoimmunity: A nested case–control study within the TRIGR birth cohort.
Published in:
Pediatric Diabetes, 2021, v. 22, n. 4, p. 577, doi. 10.1111/pedi.13189
By:
- Hakola, Leena;
- Erlund, Iris;
- Cuthbertson, David;
- Miettinen, Maija E.;
- Autio, Reija;
- Nucci, Anita M.;
- Härkönen, Taina;
- Honkanen, Jarno;
- Vaarala, Outi;
- Hyöty, Heikki;
- Knip, Mikael;
- Krischer, Jeffrey P.;
- Niinistö, Sari;
- Virtanen, Suvi M.
Publication type:
Article
Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls.
Published in:
Pediatric Diabetes, 2017, v. 18, n. 7, p. 588, doi. 10.1111/pedi.12468
By:
- Cinek, Ondrej;
- Kramna, Lenka;
- Lin, Jake;
- Oikarinen, Sami;
- Kolarova, Katerina;
- Ilonen, Jorma;
- Simell, Olli;
- Veijola, Riitta;
- Autio, Reija;
- Hyöty, Heikki
Publication type:
Article
Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines.
Published in:
Oncogene, 2004, v. 23, n. 4, p. 1010, doi. 10.1038/sj.onc.1207200
By:
- Kauraniemi, Päivikki;
- Hautaniemi, Sampsa;
- Autio, Reija;
- Astola, Jaakko;
- Monni, Outi;
- Elkahloun, Abdel;
- Kallioniemi, Anne
Publication type:
Article
Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles.
Published in:
PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068415
By:
- Tuomela, Soile;
- Autio, Reija;
- Buerki-Thurnherr, Tina;
- Arslan, Osman;
- Kunzmann, Andrea;
- Andersson-Willman, Britta;
- Wick, Peter;
- Mathur, Sanjay;
- Scheynius, Annika;
- Krug, Harald F.;
- Fadeel, Bengt;
- Lahesmaa, Riitta
Publication type:
Article
NanoMiner — Integrative Human Transcriptomics Data Resource for Nanoparticle Research.
Published in:
PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068414
By:
- Kong, Lingjia;
- Tuomela, Soile;
- Hahne, Lauri;
- Ahlfors, Helena;
- Yli-Harja, Olli;
- Fadeel, Bengt;
- Lahesmaa, Riitta;
- Autio, Reija
Publication type:
Article